Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04114 and MPMX19_04115 are separated by 22 nucleotides MPMX19_04115 and MPMX19_04116 overlap by 4 nucleotides
MPMX19_04114: MPMX19_04114 - hypothetical protein, at 421,078 to 422,766
_04114
MPMX19_04115: MPMX19_04115 - Sensor histidine kinase RcsC, at 422,789 to 425,038
_04115
MPMX19_04116: MPMX19_04116 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 425,035 to 426,210
_04116
Position (kb) 422
423
424
425
426 Strain fitness (log2 ratio) -2
-1
0
1 at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.756 kb on - strand at 422.756 kb on - strand at 422.756 kb on - strand at 424.681 kb on + strand, within MPMX19_04115 at 424.682 kb on - strand, within MPMX19_04115 at 424.682 kb on - strand, within MPMX19_04115 at 424.976 kb on + strand at 424.976 kb on + strand at 424.976 kb on + strand at 424.976 kb on + strand at 424.977 kb on - strand at 424.977 kb on - strand at 424.977 kb on - strand at 424.977 kb on - strand at 425.416 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.975 kb on - strand, within MPMX19_04116
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 422,755 + -2.2 422,755 + +0.7 422,755 + -0.9 422,755 + +0.3 422,755 + -0.4 422,755 + -1.6 422,755 + +0.2 422,755 + -0.1 422,756 - -0.9 422,756 - +0.2 422,756 - +0.2 424,681 + MPMX19_04115 0.84 +1.4 424,682 - MPMX19_04115 0.84 -0.6 424,682 - MPMX19_04115 0.84 +0.4 424,976 + +1.3 424,976 + -0.9 424,976 + -0.6 424,976 + -0.1 424,977 - -0.7 424,977 - -0.9 424,977 - +0.4 424,977 - -0.8 425,416 + MPMX19_04116 0.32 -0.1 425,745 + MPMX19_04116 0.60 +0.4 425,745 + MPMX19_04116 0.60 -0.6 425,745 + MPMX19_04116 0.60 +0.2 425,745 + MPMX19_04116 0.60 -0.8 425,746 - MPMX19_04116 0.60 +0.1 425,746 - MPMX19_04116 0.60 -1.0 425,746 - MPMX19_04116 0.60 +0.6 425,746 - MPMX19_04116 0.60 +0.1 425,746 - MPMX19_04116 0.60 -0.4 425,851 + MPMX19_04116 0.69 -0.3 425,851 + MPMX19_04116 0.69 +0.7 425,851 + MPMX19_04116 0.69 -0.4 425,851 + MPMX19_04116 0.69 -0.3 425,851 + MPMX19_04116 0.69 +1.0 425,851 + MPMX19_04116 0.69 -0.3 425,851 + MPMX19_04116 0.69 +0.4 425,851 + MPMX19_04116 0.69 -0.4 425,851 + MPMX19_04116 0.69 -1.0 425,852 - MPMX19_04116 0.69 +0.6 425,852 - MPMX19_04116 0.69 -0.0 425,852 - MPMX19_04116 0.69 -0.1 425,852 - MPMX19_04116 0.69 +1.3 425,852 - MPMX19_04116 0.69 -1.9 425,852 - MPMX19_04116 0.69 -0.4 425,852 - MPMX19_04116 0.69 -0.4 425,852 - MPMX19_04116 0.69 -1.4 425,975 - MPMX19_04116 0.80 +0.3
Or see this region's nucleotide sequence