Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04100

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04098 and MPMX19_04099 are separated by 259 nucleotidesMPMX19_04099 and MPMX19_04100 are separated by 183 nucleotidesMPMX19_04100 and MPMX19_04101 are separated by 27 nucleotides MPMX19_04098: MPMX19_04098 - Sensor histidine kinase RcsC, at 403,399 to 405,594 _04098 MPMX19_04099: MPMX19_04099 - Chemotaxis protein CheY, at 405,854 to 406,285 _04099 MPMX19_04100: MPMX19_04100 - hypothetical protein, at 406,469 to 407,233 _04100 MPMX19_04101: MPMX19_04101 - hypothetical protein, at 407,261 to 408,565 _04101 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1 2 3at 405.641 kb on - strandat 405.723 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.754 kb on + strandat 405.754 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.786 kb on - strandat 405.786 kb on - strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.953 kb on + strand, within MPMX19_04099at 405.953 kb on + strand, within MPMX19_04099at 405.954 kb on - strand, within MPMX19_04099at 405.954 kb on - strand, within MPMX19_04099at 406.202 kb on + strand, within MPMX19_04099at 406.202 kb on + strand, within MPMX19_04099at 406.203 kb on - strand, within MPMX19_04099at 406.203 kb on - strand, within MPMX19_04099at 406.217 kb on + strand, within MPMX19_04099at 406.218 kb on - strand, within MPMX19_04099at 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.687 kb on + strand, within MPMX19_04100at 406.687 kb on + strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 407.486 kb on + strand, within MPMX19_04101at 407.486 kb on + strand, within MPMX19_04101at 407.486 kb on + strand, within MPMX19_04101at 407.486 kb on - strand, within MPMX19_04101at 407.487 kb on - strand, within MPMX19_04101at 407.555 kb on + strand, within MPMX19_04101at 407.555 kb on + strand, within MPMX19_04101at 407.556 kb on - strand, within MPMX19_04101at 407.556 kb on - strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.997 kb on - strand, within MPMX19_04101at 407.997 kb on - strand, within MPMX19_04101at 408.209 kb on + strand, within MPMX19_04101at 408.209 kb on + strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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405,641 - +0.8
405,723 + -1.2
405,726 + +0.2
405,726 + -1.6
405,726 + -1.2
405,726 + -0.3
405,726 + -0.4
405,726 + -1.2
405,726 + +0.1
405,726 + -1.6
405,726 + -0.8
405,726 + +0.4
405,726 + -0.2
405,726 + -1.4
405,726 + -1.9
405,726 + -1.0
405,727 - +0.1
405,727 - +0.2
405,727 - +1.1
405,727 - +0.2
405,727 - +0.4
405,727 - -0.8
405,754 + -0.8
405,754 + -1.3
405,785 + +1.3
405,785 + -0.3
405,785 + -1.4
405,785 + +0.8
405,785 + +0.6
405,786 - -0.4
405,786 - -0.7
405,897 + -0.7
405,897 + -0.6
405,897 + -0.4
405,897 + -0.6
405,898 - MPMX19_04099 0.10 -1.2
405,898 - MPMX19_04099 0.10 -0.6
405,898 - MPMX19_04099 0.10 +0.6
405,898 - MPMX19_04099 0.10 -2.0
405,953 + MPMX19_04099 0.23 +0.2
405,953 + MPMX19_04099 0.23 +1.0
405,954 - MPMX19_04099 0.23 -0.7
405,954 - MPMX19_04099 0.23 +0.8
406,202 + MPMX19_04099 0.81 -1.1
406,202 + MPMX19_04099 0.81 -1.3
406,203 - MPMX19_04099 0.81 -0.8
406,203 - MPMX19_04099 0.81 +0.4
406,217 + MPMX19_04099 0.84 +0.2
406,218 - MPMX19_04099 0.84 +0.3
406,369 + -1.0
406,369 + -0.2
406,369 + -1.0
406,369 + +0.0
406,369 + +0.2
406,369 + -0.6
406,370 - -0.6
406,370 - +0.2
406,370 - -0.5
406,370 - +0.2
406,687 + MPMX19_04100 0.28 -0.3
406,687 + MPMX19_04100 0.28 +0.4
406,688 - MPMX19_04100 0.29 -0.4
406,688 - MPMX19_04100 0.29 +0.4
406,688 - MPMX19_04100 0.29 -1.0
406,688 - MPMX19_04100 0.29 -1.0
406,688 - MPMX19_04100 0.29 -0.2
407,486 + MPMX19_04101 0.17 +1.2
407,486 + MPMX19_04101 0.17 -1.9
407,486 + MPMX19_04101 0.17 -0.0
407,486 - MPMX19_04101 0.17 -0.0
407,487 - MPMX19_04101 0.17 +1.3
407,555 + MPMX19_04101 0.23 -0.7
407,555 + MPMX19_04101 0.23 +1.9
407,556 - MPMX19_04101 0.23 -0.2
407,556 - MPMX19_04101 0.23 +0.4
407,600 + MPMX19_04101 0.26 +1.2
407,600 + MPMX19_04101 0.26 -0.6
407,600 + MPMX19_04101 0.26 +0.3
407,600 + MPMX19_04101 0.26 +0.6
407,600 + MPMX19_04101 0.26 +0.3
407,600 + MPMX19_04101 0.26 -1.4
407,600 + MPMX19_04101 0.26 +0.6
407,600 + MPMX19_04101 0.26 +0.9
407,600 + MPMX19_04101 0.26 -1.2
407,600 + MPMX19_04101 0.26 -1.2
407,600 + MPMX19_04101 0.26 +2.9
407,600 + MPMX19_04101 0.26 -0.6
407,600 + MPMX19_04101 0.26 -0.8
407,600 + MPMX19_04101 0.26 -0.0
407,600 + MPMX19_04101 0.26 -0.4
407,600 + MPMX19_04101 0.26 -1.4
407,600 + MPMX19_04101 0.26 -1.8
407,600 + MPMX19_04101 0.26 -0.0
407,600 + MPMX19_04101 0.26 -0.0
407,600 + MPMX19_04101 0.26 -2.4
407,600 + MPMX19_04101 0.26 +1.1
407,600 + MPMX19_04101 0.26 -0.3
407,600 + MPMX19_04101 0.26 -0.1
407,600 + MPMX19_04101 0.26 -0.8
407,601 - MPMX19_04101 0.26 -0.3
407,601 - MPMX19_04101 0.26 +0.9
407,601 - MPMX19_04101 0.26 -1.8
407,601 - MPMX19_04101 0.26 -0.0
407,601 - MPMX19_04101 0.26 -0.3
407,601 - MPMX19_04101 0.26 -1.2
407,601 - MPMX19_04101 0.26 +0.1
407,601 - MPMX19_04101 0.26 +1.0
407,601 - MPMX19_04101 0.26 -0.0
407,601 - MPMX19_04101 0.26 -1.9
407,601 - MPMX19_04101 0.26 -1.0
407,601 - MPMX19_04101 0.26 -1.2
407,601 - MPMX19_04101 0.26 +1.1
407,601 - MPMX19_04101 0.26 -0.0
407,601 - MPMX19_04101 0.26 -0.2
407,997 - MPMX19_04101 0.56 -0.0
407,997 - MPMX19_04101 0.56 -0.0
408,209 + MPMX19_04101 0.73 +0.3
408,209 + MPMX19_04101 0.73 -0.5
408,210 - MPMX19_04101 0.73 +1.6
408,210 - MPMX19_04101 0.73 -0.3
408,210 - MPMX19_04101 0.73 -0.9
408,210 - MPMX19_04101 0.73 +0.2

Or see this region's nucleotide sequence