Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04083 and MPMX19_04084 are separated by 10 nucleotides MPMX19_04084 and MPMX19_04085 are separated by 167 nucleotides MPMX19_04085 and MPMX19_04086 overlap by 4 nucleotides
MPMX19_04083: MPMX19_04083 - Cytochrome c-type protein SHP, at 387,135 to 387,581
_04083
MPMX19_04084: MPMX19_04084 - hypothetical protein, at 387,592 to 388,041
_04084
MPMX19_04085: MPMX19_04085 - hypothetical protein, at 388,209 to 388,562
_04085
MPMX19_04086: MPMX19_04086 - hypothetical protein, at 388,559 to 390,463
_04086
Position (kb) 388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.322 kb on - strand, within MPMX19_04083 at 387.322 kb on - strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.560 kb on + strand at 387.560 kb on + strand at 387.560 kb on + strand at 387.561 kb on - strand at 387.561 kb on - strand at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 388.027 kb on + strand at 388.027 kb on + strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.162 kb on + strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.612 kb on + strand at 388.612 kb on + strand at 388.612 kb on + strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.648 kb on - strand at 388.648 kb on - strand at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.545 kb on + strand, within MPMX19_04086
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 387,321 + MPMX19_04083 0.42 +0.3 387,321 + MPMX19_04083 0.42 +0.2 387,321 + MPMX19_04083 0.42 -0.5 387,321 + MPMX19_04083 0.42 -0.7 387,321 + MPMX19_04083 0.42 -0.0 387,321 + MPMX19_04083 0.42 -0.7 387,322 - MPMX19_04083 0.42 -0.9 387,322 - MPMX19_04083 0.42 +0.6 387,411 + MPMX19_04083 0.62 -1.2 387,411 + MPMX19_04083 0.62 +0.4 387,411 + MPMX19_04083 0.62 +1.6 387,411 + MPMX19_04083 0.62 -1.2 387,411 + MPMX19_04083 0.62 +0.6 387,411 + MPMX19_04083 0.62 +0.5 387,411 + MPMX19_04083 0.62 -1.6 387,412 - MPMX19_04083 0.62 -0.9 387,412 - MPMX19_04083 0.62 -0.0 387,412 - MPMX19_04083 0.62 +1.3 387,412 - MPMX19_04083 0.62 -1.3 387,412 - MPMX19_04083 0.62 -1.0 387,560 + -0.6 387,560 + +0.8 387,560 + +0.1 387,561 - -0.6 387,561 - +0.8 387,862 + MPMX19_04084 0.60 -2.1 387,862 + MPMX19_04084 0.60 -1.2 387,862 + MPMX19_04084 0.60 +0.6 387,862 + MPMX19_04084 0.60 -0.7 387,862 + MPMX19_04084 0.60 -0.7 387,862 + MPMX19_04084 0.60 -1.2 387,862 + MPMX19_04084 0.60 -1.9 387,862 + MPMX19_04084 0.60 -1.0 387,862 + MPMX19_04084 0.60 -1.1 387,863 - MPMX19_04084 0.60 +0.2 387,863 - MPMX19_04084 0.60 +0.1 387,863 - MPMX19_04084 0.60 +0.3 387,863 - MPMX19_04084 0.60 -0.6 387,863 - MPMX19_04084 0.60 -1.0 387,863 - MPMX19_04084 0.60 -0.5 387,863 - MPMX19_04084 0.60 -0.0 388,027 + +0.5 388,027 + -0.9 388,028 - +0.5 388,028 - -0.6 388,028 - -2.0 388,028 - +0.4 388,028 - -0.6 388,028 - +1.6 388,028 - -0.0 388,028 - -0.5 388,054 + -1.6 388,054 + +0.8 388,054 + +0.6 388,054 + -0.3 388,054 + -1.9 388,054 + -0.7 388,054 + -1.2 388,054 + -0.2 388,055 - -0.0 388,055 - +0.1 388,055 - -0.2 388,055 - -0.0 388,055 - +0.4 388,055 - -2.2 388,055 - +0.5 388,055 - -1.0 388,055 - -0.3 388,055 - -1.3 388,055 - -1.1 388,055 - -2.0 388,055 - -0.6 388,055 - -0.5 388,066 + -1.4 388,066 + -0.1 388,066 + +0.3 388,066 + -0.8 388,066 + -0.0 388,066 + +0.3 388,066 + +0.8 388,066 + +1.1 388,066 + +0.5 388,066 + -1.2 388,067 - -0.4 388,067 - -0.5 388,067 - -2.1 388,067 - -0.9 388,067 - -0.9 388,162 + +0.0 388,163 - -0.4 388,163 - -1.4 388,163 - +0.3 388,163 - +0.4 388,184 + -0.9 388,184 + -0.4 388,184 + +0.4 388,193 + -0.3 388,193 + -0.3 388,193 + +1.0 388,193 + -1.0 388,193 + -1.0 388,193 + +0.4 388,196 + -0.4 388,196 + -0.4 388,196 + +1.4 388,196 + -0.7 388,196 + +0.2 388,196 + -1.1 388,196 + +1.4 388,196 + -2.5 388,196 + +0.4 388,196 + -1.0 388,196 + -3.1 388,196 + +0.3 388,196 + -1.0 388,196 + -1.0 388,196 + -0.6 388,411 + MPMX19_04085 0.57 -1.2 388,411 + MPMX19_04085 0.57 -1.2 388,411 + MPMX19_04085 0.57 -1.0 388,411 + MPMX19_04085 0.57 -0.3 388,411 + MPMX19_04085 0.57 -1.2 388,411 + MPMX19_04085 0.57 +1.1 388,411 + MPMX19_04085 0.57 -0.6 388,412 - MPMX19_04085 0.57 -0.3 388,412 - MPMX19_04085 0.57 +1.0 388,612 + +0.3 388,612 + +0.0 388,612 + -1.1 388,613 - -0.4 388,613 - -0.9 388,613 - -0.5 388,613 - -0.6 388,613 - -1.4 388,613 - -0.3 388,613 - -1.6 388,613 - -1.2 388,613 - +0.3 388,613 - +0.1 388,613 - -0.1 388,613 - +0.6 388,648 - +0.4 388,648 - +0.2 388,923 + MPMX19_04086 0.19 +0.4 388,923 + MPMX19_04086 0.19 +0.2 388,923 + MPMX19_04086 0.19 -1.0 388,923 + MPMX19_04086 0.19 -0.2 388,923 + MPMX19_04086 0.19 -1.4 388,923 + MPMX19_04086 0.19 +0.3 388,923 + MPMX19_04086 0.19 -0.0 388,923 + MPMX19_04086 0.19 -1.7 388,923 + MPMX19_04086 0.19 +0.4 388,923 + MPMX19_04086 0.19 -1.3 388,923 + MPMX19_04086 0.19 +1.4 388,923 + MPMX19_04086 0.19 -0.9 388,923 + MPMX19_04086 0.19 +0.3 388,923 + MPMX19_04086 0.19 -0.6 388,923 + MPMX19_04086 0.19 -2.6 388,923 + MPMX19_04086 0.19 +0.8 388,924 - MPMX19_04086 0.19 +0.6 388,924 - MPMX19_04086 0.19 -0.2 388,924 - MPMX19_04086 0.19 -0.2 388,924 - MPMX19_04086 0.19 +0.5 388,924 - MPMX19_04086 0.19 -1.0 388,924 - MPMX19_04086 0.19 -1.0 388,924 - MPMX19_04086 0.19 -1.4 388,924 - MPMX19_04086 0.19 +0.5 388,924 - MPMX19_04086 0.19 -1.5 388,924 - MPMX19_04086 0.19 -0.8 388,924 - MPMX19_04086 0.19 -0.6 388,924 - MPMX19_04086 0.19 -1.4 388,924 - MPMX19_04086 0.19 +0.9 388,924 - MPMX19_04086 0.19 -0.7 388,924 - MPMX19_04086 0.19 -0.7 389,220 - MPMX19_04086 0.35 +0.4 389,220 - MPMX19_04086 0.35 -1.7 389,220 - MPMX19_04086 0.35 +0.1 389,545 + MPMX19_04086 0.52 +0.3
Or see this region's nucleotide sequence