Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04081

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04078 and MPMX19_04079 are separated by 4 nucleotidesMPMX19_04079 and MPMX19_04080 are separated by 215 nucleotidesMPMX19_04080 and MPMX19_04081 are separated by 12 nucleotidesMPMX19_04081 and MPMX19_04082 are separated by 24 nucleotidesMPMX19_04082 and MPMX19_04083 overlap by 4 nucleotides MPMX19_04078: MPMX19_04078 - Virulence transcriptional regulatory protein PhoP, at 384,796 to 385,455 _04078 MPMX19_04079: MPMX19_04079 - hypothetical protein, at 385,460 to 385,783 _04079 MPMX19_04080: MPMX19_04080 - hypothetical protein, at 385,999 to 386,433 _04080 MPMX19_04081: MPMX19_04081 - hypothetical protein, at 386,446 to 386,577 _04081 MPMX19_04082: MPMX19_04082 - hypothetical protein, at 386,602 to 387,138 _04082 MPMX19_04083: MPMX19_04083 - Cytochrome c-type protein SHP, at 387,135 to 387,581 _04083 Position (kb) 386 387Strain fitness (log2 ratio) -2 -1 0 1 2at 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 386.512 kb on + strand, within MPMX19_04081at 386.512 kb on + strand, within MPMX19_04081at 386.512 kb on + strand, within MPMX19_04081at 386.513 kb on - strand, within MPMX19_04081at 386.513 kb on - strand, within MPMX19_04081at 386.583 kb on + strandat 386.583 kb on + strandat 386.583 kb on + strandat 386.584 kb on - strandat 386.584 kb on - strandat 386.584 kb on - strandat 386.686 kb on + strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.734 kb on + strand, within MPMX19_04082at 386.735 kb on - strand, within MPMX19_04082at 386.735 kb on - strand, within MPMX19_04082at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.322 kb on - strand, within MPMX19_04083at 387.322 kb on - strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.560 kb on + strandat 387.560 kb on + strandat 387.560 kb on + strandat 387.561 kb on - strandat 387.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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385,461 + +0.3
385,461 + +1.1
385,461 + -0.2
385,461 + -0.9
385,461 + +0.5
385,461 + -1.6
385,461 + -0.5
385,461 + +0.6
385,461 + -1.5
385,462 - +0.1
385,462 - -0.0
385,462 - -0.9
385,462 - -0.7
385,462 - -0.2
385,462 - -0.9
385,462 - -0.7
385,462 - -1.4
385,462 - +0.7
385,527 + MPMX19_04079 0.21 -1.7
385,527 + MPMX19_04079 0.21 -1.3
385,527 + MPMX19_04079 0.21 -0.5
385,527 + MPMX19_04079 0.21 +0.4
385,842 + +1.1
385,842 + -0.7
385,842 + +0.6
385,842 + +0.4
385,842 + +1.3
385,843 - -1.2
385,843 - +1.3
385,843 - -0.3
385,843 - -1.1
385,843 - -0.0
385,843 - +0.8
385,843 - -2.0
386,512 + MPMX19_04081 0.50 -1.0
386,512 + MPMX19_04081 0.50 -0.9
386,512 + MPMX19_04081 0.50 -0.8
386,513 - MPMX19_04081 0.51 -2.5
386,513 - MPMX19_04081 0.51 -0.2
386,583 + +0.1
386,583 + +0.1
386,583 + +0.3
386,584 - +1.3
386,584 - -0.5
386,584 - -0.7
386,686 + MPMX19_04082 0.16 -0.5
386,687 - MPMX19_04082 0.16 -0.2
386,687 - MPMX19_04082 0.16 -1.2
386,687 - MPMX19_04082 0.16 +0.3
386,687 - MPMX19_04082 0.16 -1.3
386,687 - MPMX19_04082 0.16 +0.5
386,687 - MPMX19_04082 0.16 -0.3
386,687 - MPMX19_04082 0.16 -1.4
386,687 - MPMX19_04082 0.16 -0.2
386,687 - MPMX19_04082 0.16 +1.2
386,687 - MPMX19_04082 0.16 +0.4
386,710 + MPMX19_04082 0.20 +0.3
386,710 + MPMX19_04082 0.20 -1.9
386,710 + MPMX19_04082 0.20 -0.5
386,710 + MPMX19_04082 0.20 +0.6
386,710 + MPMX19_04082 0.20 +1.3
386,710 + MPMX19_04082 0.20 +2.0
386,710 + MPMX19_04082 0.20 +0.2
386,711 - MPMX19_04082 0.20 +0.6
386,711 - MPMX19_04082 0.20 -2.5
386,711 - MPMX19_04082 0.20 +0.3
386,711 - MPMX19_04082 0.20 -0.7
386,711 - MPMX19_04082 0.20 +0.9
386,711 - MPMX19_04082 0.20 +2.6
386,711 - MPMX19_04082 0.20 -0.6
386,711 - MPMX19_04082 0.20 -0.4
386,711 - MPMX19_04082 0.20 -1.9
386,711 - MPMX19_04082 0.20 +0.1
386,711 - MPMX19_04082 0.20 -0.4
386,734 + MPMX19_04082 0.25 -0.7
386,735 - MPMX19_04082 0.25 +0.7
386,735 - MPMX19_04082 0.25 -0.2
387,321 + MPMX19_04083 0.42 +0.3
387,321 + MPMX19_04083 0.42 +0.2
387,321 + MPMX19_04083 0.42 -0.5
387,321 + MPMX19_04083 0.42 -0.7
387,321 + MPMX19_04083 0.42 -0.0
387,321 + MPMX19_04083 0.42 -0.7
387,322 - MPMX19_04083 0.42 -0.9
387,322 - MPMX19_04083 0.42 +0.6
387,411 + MPMX19_04083 0.62 -1.2
387,411 + MPMX19_04083 0.62 +0.4
387,411 + MPMX19_04083 0.62 +1.6
387,411 + MPMX19_04083 0.62 -1.2
387,411 + MPMX19_04083 0.62 +0.6
387,411 + MPMX19_04083 0.62 +0.5
387,411 + MPMX19_04083 0.62 -1.6
387,412 - MPMX19_04083 0.62 -0.9
387,412 - MPMX19_04083 0.62 -0.0
387,412 - MPMX19_04083 0.62 +1.3
387,412 - MPMX19_04083 0.62 -1.3
387,412 - MPMX19_04083 0.62 -1.0
387,560 + -0.6
387,560 + +0.8
387,560 + +0.1
387,561 - -0.6
387,561 - +0.8

Or see this region's nucleotide sequence