Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04029

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04028 and MPMX19_04029 are separated by 150 nucleotidesMPMX19_04029 and MPMX19_04030 are separated by 103 nucleotides MPMX19_04028: MPMX19_04028 - Gamma-glutamylputrescine oxidoreductase, at 323,443 to 324,738 _04028 MPMX19_04029: MPMX19_04029 - Glycine cleavage system transcriptional activator, at 324,889 to 325,812 _04029 MPMX19_04030: MPMX19_04030 - hypothetical protein, at 325,916 to 327,349 _04030 Position (kb) 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 323.969 kb on + strand, within MPMX19_04028at 323.969 kb on + strand, within MPMX19_04028at 323.970 kb on - strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.021 kb on - strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.459 kb on - strand, within MPMX19_04028at 324.623 kb on + strandat 324.623 kb on + strandat 324.624 kb on - strandat 324.805 kb on + strandat 325.099 kb on + strand, within MPMX19_04029at 325.099 kb on + strand, within MPMX19_04029at 325.100 kb on - strand, within MPMX19_04029at 325.100 kb on - strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.171 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.694 kb on - strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.855 kb on + strandat 325.855 kb on + strandat 325.855 kb on + strandat 325.855 kb on + strandat 325.855 kb on + strandat 325.856 kb on - strandat 325.856 kb on - strandat 325.856 kb on - strandat 325.856 kb on - strandat 325.856 kb on - strandat 325.857 kb on + strandat 325.857 kb on + strandat 325.857 kb on + strandat 325.857 kb on + strandat 325.857 kb on + strandat 325.857 kb on + strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 325.858 kb on - strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.030 kb on + strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.031 kb on - strandat 326.051 kb on + strandat 326.052 kb on - strandat 326.052 kb on - strandat 326.052 kb on - strandat 326.253 kb on - strand, within MPMX19_04030at 326.255 kb on + strand, within MPMX19_04030at 326.255 kb on + strand, within MPMX19_04030at 326.255 kb on + strand, within MPMX19_04030at 326.255 kb on + strand, within MPMX19_04030at 326.256 kb on - strand, within MPMX19_04030at 326.567 kb on + strand, within MPMX19_04030at 326.567 kb on + strand, within MPMX19_04030at 326.567 kb on + strand, within MPMX19_04030at 326.568 kb on - strand, within MPMX19_04030at 326.568 kb on - strand, within MPMX19_04030at 326.568 kb on - strand, within MPMX19_04030at 326.568 kb on - strand, within MPMX19_04030at 326.568 kb on - strand, within MPMX19_04030at 326.568 kb on - strand, within MPMX19_04030

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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323,969 + MPMX19_04028 0.41 +0.6
323,969 + MPMX19_04028 0.41 +1.0
323,970 - MPMX19_04028 0.41 +0.8
324,020 + MPMX19_04028 0.45 -1.9
324,020 + MPMX19_04028 0.45 -2.1
324,020 + MPMX19_04028 0.45 -0.0
324,021 - MPMX19_04028 0.45 +0.2
324,176 + MPMX19_04028 0.57 +0.4
324,176 + MPMX19_04028 0.57 +0.9
324,176 + MPMX19_04028 0.57 +0.2
324,176 + MPMX19_04028 0.57 -1.0
324,176 + MPMX19_04028 0.57 +1.1
324,177 - MPMX19_04028 0.57 +1.4
324,177 - MPMX19_04028 0.57 +0.5
324,177 - MPMX19_04028 0.57 -2.1
324,177 - MPMX19_04028 0.57 -0.6
324,227 + MPMX19_04028 0.60 -1.1
324,227 + MPMX19_04028 0.60 +0.6
324,227 + MPMX19_04028 0.60 -0.7
324,227 + MPMX19_04028 0.60 +0.2
324,227 + MPMX19_04028 0.60 -0.2
324,227 + MPMX19_04028 0.60 -1.6
324,227 + MPMX19_04028 0.60 +0.4
324,227 + MPMX19_04028 0.60 +0.9
324,227 + MPMX19_04028 0.60 -0.6
324,227 + MPMX19_04028 0.60 +0.0
324,227 + MPMX19_04028 0.60 +0.8
324,228 - MPMX19_04028 0.61 -1.3
324,228 - MPMX19_04028 0.61 +0.6
324,228 - MPMX19_04028 0.61 -0.6
324,228 - MPMX19_04028 0.61 +0.3
324,458 + MPMX19_04028 0.78 -0.4
324,458 + MPMX19_04028 0.78 -0.8
324,458 + MPMX19_04028 0.78 -1.7
324,458 + MPMX19_04028 0.78 -0.1
324,459 - MPMX19_04028 0.78 +0.7
324,623 + -0.7
324,623 + -1.0
324,624 - -0.5
324,805 + +0.3
325,099 + MPMX19_04029 0.23 +0.0
325,099 + MPMX19_04029 0.23 +2.0
325,100 - MPMX19_04029 0.23 +1.6
325,100 - MPMX19_04029 0.23 +0.9
325,102 + MPMX19_04029 0.23 +1.1
325,102 + MPMX19_04029 0.23 -0.6
325,102 + MPMX19_04029 0.23 -1.3
325,102 + MPMX19_04029 0.23 +0.6
325,102 + MPMX19_04029 0.23 +1.0
325,102 + MPMX19_04029 0.23 +2.0
325,102 + MPMX19_04029 0.23 +0.6
325,102 + MPMX19_04029 0.23 +0.1
325,102 + MPMX19_04029 0.23 -1.5
325,102 + MPMX19_04029 0.23 -0.4
325,102 + MPMX19_04029 0.23 -0.4
325,103 - MPMX19_04029 0.23 -0.4
325,103 - MPMX19_04029 0.23 -0.7
325,103 - MPMX19_04029 0.23 +1.3
325,103 - MPMX19_04029 0.23 -0.4
325,103 - MPMX19_04029 0.23 +0.0
325,103 - MPMX19_04029 0.23 -0.6
325,103 - MPMX19_04029 0.23 +1.6
325,103 - MPMX19_04029 0.23 +1.0
325,171 + MPMX19_04029 0.31 +0.3
325,693 + MPMX19_04029 0.87 +1.0
325,693 + MPMX19_04029 0.87 -0.4
325,693 + MPMX19_04029 0.87 +1.0
325,693 + MPMX19_04029 0.87 -0.7
325,693 + MPMX19_04029 0.87 +0.9
325,693 + MPMX19_04029 0.87 +0.2
325,693 + MPMX19_04029 0.87 +0.6
325,694 - MPMX19_04029 0.87 -0.7
325,696 + MPMX19_04029 0.87 -0.6
325,696 + MPMX19_04029 0.87 +1.0
325,696 + MPMX19_04029 0.87 -0.3
325,696 + MPMX19_04029 0.87 -1.6
325,696 + MPMX19_04029 0.87 +0.3
325,696 + MPMX19_04029 0.87 -0.3
325,696 + MPMX19_04029 0.87 -0.7
325,696 + MPMX19_04029 0.87 -0.3
325,696 + MPMX19_04029 0.87 +1.3
325,697 - MPMX19_04029 0.87 -0.6
325,697 - MPMX19_04029 0.87 -0.5
325,697 - MPMX19_04029 0.87 -0.4
325,697 - MPMX19_04029 0.87 -0.2
325,697 - MPMX19_04029 0.87 -0.9
325,697 - MPMX19_04029 0.87 -1.6
325,697 - MPMX19_04029 0.87 -2.8
325,697 - MPMX19_04029 0.87 +0.0
325,855 + -2.4
325,855 + +0.1
325,855 + -0.4
325,855 + +1.2
325,855 + -0.7
325,856 - +0.0
325,856 - -0.5
325,856 - -0.9
325,856 - +1.7
325,856 - +1.1
325,857 + +0.0
325,857 + -1.1
325,857 + +0.0
325,857 + +0.5
325,857 + -0.9
325,857 + -0.6
325,858 - +0.1
325,858 - +0.0
325,858 - -1.0
325,858 - +0.0
325,858 - +0.1
325,858 - -0.3
325,858 - -1.1
325,858 - -1.1
325,858 - +0.3
325,858 - -1.3
325,858 - +0.3
326,030 + +1.2
326,030 + -0.4
326,030 + -1.2
326,030 + -0.5
326,030 + -0.7
326,030 + -2.0
326,030 + -1.6
326,030 + -0.9
326,030 + +0.8
326,030 + -0.2
326,030 + +0.1
326,030 + +0.3
326,031 - +0.0
326,031 - -0.5
326,031 - -0.2
326,031 - -0.5
326,031 - -0.9
326,031 - +0.3
326,031 - -0.0
326,031 - +0.6
326,031 - +1.4
326,031 - -1.2
326,031 - +0.0
326,031 - -0.7
326,031 - +0.5
326,051 + -0.5
326,052 - -0.5
326,052 - +0.7
326,052 - -0.3
326,253 - MPMX19_04030 0.24 +0.2
326,255 + MPMX19_04030 0.24 -0.2
326,255 + MPMX19_04030 0.24 -0.2
326,255 + MPMX19_04030 0.24 +0.6
326,255 + MPMX19_04030 0.24 +1.6
326,256 - MPMX19_04030 0.24 -1.2
326,567 + MPMX19_04030 0.45 -0.5
326,567 + MPMX19_04030 0.45 +0.3
326,567 + MPMX19_04030 0.45 -1.0
326,568 - MPMX19_04030 0.45 +1.2
326,568 - MPMX19_04030 0.45 -0.3
326,568 - MPMX19_04030 0.45 +0.2
326,568 - MPMX19_04030 0.45 +1.3
326,568 - MPMX19_04030 0.45 -0.4
326,568 - MPMX19_04030 0.45 -0.4

Or see this region's nucleotide sequence