Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03997 and MPMX19_03998 are separated by 3 nucleotides MPMX19_03998 and MPMX19_03999 are separated by 102 nucleotides MPMX19_03999 and MPMX19_04000 are separated by 209 nucleotides
MPMX19_03997: MPMX19_03997 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 292,094 to 293,395
_03997
MPMX19_03998: MPMX19_03998 - hypothetical protein, at 293,399 to 293,908
_03998
MPMX19_03999: MPMX19_03999 - hypothetical protein, at 294,011 to 295,045
_03999
MPMX19_04000: MPMX19_04000 - Flagellar motor switch protein FliG, at 295,255 to 296,277
_04000
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.430 kb on + strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.431 kb on - strand at 293.572 kb on - strand, within MPMX19_03998 at 293.572 kb on - strand, within MPMX19_03998 at 293.579 kb on + strand, within MPMX19_03998 at 293.581 kb on - strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.598 kb on + strand, within MPMX19_03998 at 293.599 kb on - strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.610 kb on + strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.611 kb on - strand, within MPMX19_03998 at 293.764 kb on - strand, within MPMX19_03998 at 293.764 kb on - strand, within MPMX19_03998 at 294.013 kb on - strand at 294.013 kb on - strand at 294.318 kb on + strand, within MPMX19_03999 at 294.318 kb on + strand, within MPMX19_03999 at 294.319 kb on - strand, within MPMX19_03999 at 294.319 kb on - strand, within MPMX19_03999 at 294.321 kb on + strand, within MPMX19_03999 at 294.321 kb on + strand, within MPMX19_03999 at 294.322 kb on - strand, within MPMX19_03999 at 294.322 kb on - strand, within MPMX19_03999 at 294.322 kb on - strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.483 kb on + strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.484 kb on - strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.540 kb on + strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.541 kb on - strand, within MPMX19_03999 at 294.570 kb on + strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.571 kb on - strand, within MPMX19_03999 at 294.612 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.630 kb on + strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.631 kb on - strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.637 kb on + strand, within MPMX19_03999 at 294.638 kb on - strand, within MPMX19_03999 at 294.638 kb on - strand, within MPMX19_03999 at 294.638 kb on - strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.687 kb on + strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 294.688 kb on - strand, within MPMX19_03999 at 295.231 kb on + strand at 295.259 kb on + strand at 295.259 kb on + strand at 295.260 kb on - strand at 295.260 kb on - strand at 295.260 kb on - strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.340 kb on + strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.341 kb on - strand at 295.884 kb on - strand, within MPMX19_04000 at 295.898 kb on + strand, within MPMX19_04000 at 295.898 kb on + strand, within MPMX19_04000 at 295.898 kb on + strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000 at 295.899 kb on - strand, within MPMX19_04000
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 293,430 + -0.3 293,430 + +1.5 293,430 + +1.7 293,430 + +1.9 293,430 + -0.4 293,430 + -0.3 293,430 + -0.7 293,430 + -1.0 293,430 + -0.7 293,430 + -0.5 293,430 + -1.7 293,430 + -1.2 293,431 - -1.2 293,431 - -0.1 293,431 - +0.8 293,431 - -1.4 293,431 - -0.5 293,572 - MPMX19_03998 0.34 -0.9 293,572 - MPMX19_03998 0.34 +0.0 293,579 + MPMX19_03998 0.35 -0.9 293,581 - MPMX19_03998 0.36 -0.9 293,598 + MPMX19_03998 0.39 +2.9 293,598 + MPMX19_03998 0.39 -0.1 293,598 + MPMX19_03998 0.39 -1.2 293,598 + MPMX19_03998 0.39 +0.2 293,599 - MPMX19_03998 0.39 -1.0 293,610 + MPMX19_03998 0.41 -0.6 293,610 + MPMX19_03998 0.41 -0.5 293,610 + MPMX19_03998 0.41 -1.9 293,610 + MPMX19_03998 0.41 -0.4 293,610 + MPMX19_03998 0.41 +1.0 293,610 + MPMX19_03998 0.41 -1.0 293,610 + MPMX19_03998 0.41 -0.4 293,610 + MPMX19_03998 0.41 -0.5 293,611 - MPMX19_03998 0.42 +0.3 293,611 - MPMX19_03998 0.42 +0.2 293,611 - MPMX19_03998 0.42 +0.8 293,611 - MPMX19_03998 0.42 -0.8 293,611 - MPMX19_03998 0.42 +0.1 293,611 - MPMX19_03998 0.42 +1.4 293,764 - MPMX19_03998 0.72 -1.0 293,764 - MPMX19_03998 0.72 +0.6 294,013 - -0.3 294,013 - -0.2 294,318 + MPMX19_03999 0.30 -1.0 294,318 + MPMX19_03999 0.30 +0.6 294,319 - MPMX19_03999 0.30 -0.7 294,319 - MPMX19_03999 0.30 +0.3 294,321 + MPMX19_03999 0.30 -1.9 294,321 + MPMX19_03999 0.30 +0.4 294,322 - MPMX19_03999 0.30 +0.3 294,322 - MPMX19_03999 0.30 -0.5 294,322 - MPMX19_03999 0.30 -0.9 294,483 + MPMX19_03999 0.46 -0.4 294,483 + MPMX19_03999 0.46 +1.9 294,483 + MPMX19_03999 0.46 -0.3 294,483 + MPMX19_03999 0.46 +0.2 294,483 + MPMX19_03999 0.46 -0.3 294,483 + MPMX19_03999 0.46 +0.1 294,483 + MPMX19_03999 0.46 +0.2 294,484 - MPMX19_03999 0.46 -1.2 294,484 - MPMX19_03999 0.46 -0.1 294,484 - MPMX19_03999 0.46 -1.9 294,484 - MPMX19_03999 0.46 -1.1 294,484 - MPMX19_03999 0.46 -0.4 294,484 - MPMX19_03999 0.46 -1.4 294,540 + MPMX19_03999 0.51 +1.0 294,540 + MPMX19_03999 0.51 -2.1 294,540 + MPMX19_03999 0.51 -1.7 294,540 + MPMX19_03999 0.51 -0.7 294,540 + MPMX19_03999 0.51 -0.2 294,540 + MPMX19_03999 0.51 -0.5 294,540 + MPMX19_03999 0.51 -1.7 294,540 + MPMX19_03999 0.51 -1.3 294,540 + MPMX19_03999 0.51 +0.2 294,540 + MPMX19_03999 0.51 -1.4 294,540 + MPMX19_03999 0.51 +0.7 294,540 + MPMX19_03999 0.51 +1.2 294,540 + MPMX19_03999 0.51 +0.3 294,541 - MPMX19_03999 0.51 -0.1 294,541 - MPMX19_03999 0.51 -0.3 294,541 - MPMX19_03999 0.51 -1.1 294,541 - MPMX19_03999 0.51 +0.7 294,541 - MPMX19_03999 0.51 -0.2 294,541 - MPMX19_03999 0.51 -0.2 294,541 - MPMX19_03999 0.51 -1.2 294,541 - MPMX19_03999 0.51 -0.3 294,541 - MPMX19_03999 0.51 -1.6 294,541 - MPMX19_03999 0.51 -0.3 294,541 - MPMX19_03999 0.51 -0.3 294,541 - MPMX19_03999 0.51 -0.4 294,541 - MPMX19_03999 0.51 -0.3 294,541 - MPMX19_03999 0.51 +1.2 294,541 - MPMX19_03999 0.51 -0.2 294,541 - MPMX19_03999 0.51 -0.2 294,570 + MPMX19_03999 0.54 -1.0 294,571 - MPMX19_03999 0.54 -0.8 294,571 - MPMX19_03999 0.54 -1.3 294,571 - MPMX19_03999 0.54 +0.0 294,571 - MPMX19_03999 0.54 -0.9 294,571 - MPMX19_03999 0.54 -1.9 294,612 + MPMX19_03999 0.58 +1.6 294,630 + MPMX19_03999 0.60 +0.6 294,630 + MPMX19_03999 0.60 +0.3 294,630 + MPMX19_03999 0.60 -0.7 294,630 + MPMX19_03999 0.60 -1.6 294,630 + MPMX19_03999 0.60 +0.3 294,630 + MPMX19_03999 0.60 -0.6 294,630 + MPMX19_03999 0.60 +0.0 294,630 + MPMX19_03999 0.60 -0.2 294,630 + MPMX19_03999 0.60 -0.6 294,631 - MPMX19_03999 0.60 -0.3 294,631 - MPMX19_03999 0.60 -0.2 294,631 - MPMX19_03999 0.60 +0.0 294,631 - MPMX19_03999 0.60 -0.1 294,631 - MPMX19_03999 0.60 -1.2 294,631 - MPMX19_03999 0.60 +0.7 294,631 - MPMX19_03999 0.60 +0.4 294,631 - MPMX19_03999 0.60 -0.6 294,631 - MPMX19_03999 0.60 -0.3 294,631 - MPMX19_03999 0.60 +0.0 294,631 - MPMX19_03999 0.60 -0.7 294,631 - MPMX19_03999 0.60 -0.3 294,631 - MPMX19_03999 0.60 -0.7 294,631 - MPMX19_03999 0.60 -0.9 294,637 + MPMX19_03999 0.60 +0.3 294,637 + MPMX19_03999 0.60 -0.0 294,637 + MPMX19_03999 0.60 -0.2 294,637 + MPMX19_03999 0.60 +1.1 294,638 - MPMX19_03999 0.61 +0.0 294,638 - MPMX19_03999 0.61 -0.0 294,638 - MPMX19_03999 0.61 +0.3 294,687 + MPMX19_03999 0.65 -0.9 294,687 + MPMX19_03999 0.65 -0.7 294,687 + MPMX19_03999 0.65 -1.6 294,687 + MPMX19_03999 0.65 -0.4 294,687 + MPMX19_03999 0.65 +0.5 294,688 - MPMX19_03999 0.65 +0.4 294,688 - MPMX19_03999 0.65 -0.5 294,688 - MPMX19_03999 0.65 +0.3 294,688 - MPMX19_03999 0.65 -0.5 295,231 + -2.3 295,259 + +0.4 295,259 + +0.4 295,260 - -0.8 295,260 - +0.5 295,260 - -0.2 295,340 + -0.2 295,340 + +0.5 295,340 + -0.3 295,340 + +0.9 295,340 + +0.4 295,340 + -0.5 295,340 + +0.1 295,340 + +0.4 295,340 + -1.9 295,340 + -0.8 295,340 + +2.3 295,340 + -0.5 295,340 + -0.1 295,340 + -0.2 295,340 + +3.2 295,340 + -0.3 295,340 + -1.9 295,340 + +3.3 295,340 + +0.3 295,340 + +1.4 295,340 + -0.2 295,340 + -0.6 295,340 + -0.2 295,340 + -0.7 295,340 + -0.5 295,340 + -0.5 295,340 + +1.2 295,340 + -0.5 295,341 - +0.5 295,341 - -0.1 295,341 - +0.1 295,341 - -0.1 295,341 - -0.5 295,341 - -0.4 295,341 - +1.1 295,341 - -1.9 295,341 - -1.2 295,341 - -0.5 295,341 - +1.0 295,341 - -0.6 295,341 - -2.0 295,341 - -0.3 295,341 - -1.2 295,341 - -0.1 295,341 - +0.9 295,341 - -1.2 295,341 - +1.6 295,341 - -0.4 295,341 - +0.5 295,341 - +0.2 295,341 - +0.9 295,341 - -1.2 295,341 - -1.0 295,341 - -2.3 295,341 - -0.1 295,341 - +1.9 295,341 - -0.6 295,341 - -0.3 295,341 - +1.4 295,341 - +0.5 295,341 - -0.2 295,341 - +2.0 295,341 - -0.0 295,341 - +0.2 295,341 - +1.2 295,884 - MPMX19_04000 0.61 -0.4 295,898 + MPMX19_04000 0.63 -1.3 295,898 + MPMX19_04000 0.63 +0.2 295,898 + MPMX19_04000 0.63 -0.1 295,899 - MPMX19_04000 0.63 -0.4 295,899 - MPMX19_04000 0.63 -0.5 295,899 - MPMX19_04000 0.63 -0.5 295,899 - MPMX19_04000 0.63 -0.4 295,899 - MPMX19_04000 0.63 +0.0 295,899 - MPMX19_04000 0.63 +0.1 295,899 - MPMX19_04000 0.63 +1.1 295,899 - MPMX19_04000 0.63 +1.6
Or see this region's nucleotide sequence