Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03989 and MPMX19_03990 are separated by 369 nucleotides
MPMX19_03989: MPMX19_03989 - Phosphate starvation-inducible protein PsiF, at 281,778 to 282,101
_03989
MPMX19_03990: MPMX19_03990 - Mannonate dehydratase, at 282,471 to 283,661
_03990
Position (kb) 281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.901 kb on - strand at 280.901 kb on - strand at 280.901 kb on - strand at 280.901 kb on - strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.912 kb on - strand at 280.912 kb on - strand at 280.912 kb on - strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 281.134 kb on - strand at 281.134 kb on - strand at 281.134 kb on - strand at 281.134 kb on - strand at 281.160 kb on + strand at 281.160 kb on + strand at 281.161 kb on - strand at 281.161 kb on - strand at 281.161 kb on - strand at 281.161 kb on - strand at 281.198 kb on + strand at 281.198 kb on + strand at 281.198 kb on + strand at 281.198 kb on + strand at 281.199 kb on - strand at 281.214 kb on + strand at 281.321 kb on + strand at 281.321 kb on + strand at 281.321 kb on + strand at 281.321 kb on + strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.681 kb on + strand at 281.681 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.701 kb on + strand at 281.701 kb on + strand at 281.702 kb on - strand at 281.702 kb on - strand at 281.702 kb on - strand at 281.702 kb on - strand at 281.712 kb on - strand at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 282.091 kb on + strand at 282.091 kb on + strand at 282.091 kb on + strand at 282.091 kb on + strand at 282.091 kb on + strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.240 kb on + strand at 282.240 kb on + strand at 282.240 kb on + strand at 282.241 kb on - strand at 282.241 kb on - strand at 282.414 kb on + strand at 282.559 kb on + strand at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.100 kb on - strand, within MPMX19_03990 at 283.100 kb on - strand, within MPMX19_03990
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 280,900 + -0.4 280,900 + -0.6 280,900 + +0.7 280,900 + +0.4 280,900 + -0.2 280,900 + -0.1 280,900 + -1.2 280,900 + -0.7 280,901 - +0.0 280,901 - +0.1 280,901 - -0.3 280,901 - -1.1 280,911 + -1.2 280,911 + -0.3 280,911 + -0.4 280,911 + -1.1 280,911 + +0.8 280,911 + -1.2 280,911 + +0.7 280,912 - +0.3 280,912 - +0.3 280,912 - +0.1 280,924 + +0.9 280,924 + -1.8 280,924 + +0.6 280,924 + +0.6 280,924 + +0.5 280,924 + -0.7 280,924 + -1.0 280,924 + +1.2 280,924 + +0.7 280,924 + +0.3 280,924 + +0.2 280,924 + -0.9 280,924 + -0.7 280,924 + +0.6 280,924 + +0.3 280,924 + +0.2 280,924 + -0.2 280,924 + -0.6 280,924 + -1.7 280,925 - -2.1 280,925 - -0.5 280,925 - -0.4 280,925 - -1.2 280,925 - +0.3 280,925 - -0.6 280,925 - +0.6 280,925 - +0.2 280,925 - -0.3 280,925 - -0.1 280,925 - -0.6 280,925 - +0.5 280,925 - +0.0 280,925 - -0.4 280,925 - -1.4 280,925 - +0.0 280,925 - -0.3 280,925 - -0.1 280,925 - -1.7 281,134 - -1.4 281,134 - +0.8 281,134 - -1.4 281,134 - +0.6 281,160 + -0.4 281,160 + -0.8 281,161 - -0.2 281,161 - +0.6 281,161 - -1.3 281,161 - +0.4 281,198 + +0.0 281,198 + +0.6 281,198 + -0.7 281,198 + -1.4 281,199 - +0.6 281,214 + +0.6 281,321 + -0.0 281,321 + +0.5 281,321 + +0.9 281,321 + -0.7 281,322 - -0.3 281,322 - +0.8 281,322 - -2.0 281,322 - +0.1 281,322 - -0.6 281,322 - -1.7 281,322 - -0.6 281,322 - -2.3 281,322 - +0.4 281,681 + -0.1 281,681 + +1.6 281,699 + -2.9 281,699 + +0.0 281,699 + +0.0 281,699 + -0.7 281,699 + +0.2 281,699 + +0.4 281,699 + -0.8 281,699 + +0.7 281,699 + -1.5 281,699 + +0.2 281,699 + -0.1 281,699 + -0.4 281,699 + -1.9 281,699 + -0.9 281,700 - +0.2 281,700 - +0.8 281,700 - -0.2 281,700 - +0.6 281,700 - -0.4 281,700 - -1.2 281,700 - +1.8 281,700 - -1.4 281,700 - -0.1 281,700 - -0.5 281,700 - +0.4 281,700 - +0.9 281,700 - -0.4 281,700 - -2.3 281,700 - -1.0 281,700 - +0.7 281,700 - -0.5 281,700 - +0.9 281,700 - +1.2 281,701 + -0.7 281,701 + +0.3 281,702 - -0.1 281,702 - +0.0 281,702 - +0.0 281,702 - -0.1 281,712 - -0.1 281,933 + MPMX19_03989 0.48 +1.0 281,933 + MPMX19_03989 0.48 -0.1 281,933 + MPMX19_03989 0.48 +0.4 281,933 + MPMX19_03989 0.48 +0.8 281,933 + MPMX19_03989 0.48 +0.3 281,933 + MPMX19_03989 0.48 +0.6 281,933 + MPMX19_03989 0.48 +0.3 281,933 + MPMX19_03989 0.48 -0.9 281,933 + MPMX19_03989 0.48 -2.1 281,934 - MPMX19_03989 0.48 -1.0 281,934 - MPMX19_03989 0.48 +0.1 281,934 - MPMX19_03989 0.48 -0.7 281,934 - MPMX19_03989 0.48 -0.9 281,934 - MPMX19_03989 0.48 -2.1 281,934 - MPMX19_03989 0.48 -0.7 281,934 - MPMX19_03989 0.48 -0.7 281,934 - MPMX19_03989 0.48 +0.8 281,934 - MPMX19_03989 0.48 -0.9 281,934 - MPMX19_03989 0.48 -0.4 281,934 - MPMX19_03989 0.48 -1.6 281,934 - MPMX19_03989 0.48 -0.9 281,934 - MPMX19_03989 0.48 +2.2 281,934 - MPMX19_03989 0.48 -0.6 281,934 - MPMX19_03989 0.48 -1.0 281,934 - MPMX19_03989 0.48 +0.5 282,091 + -0.0 282,091 + -1.3 282,091 + -0.7 282,091 + -0.9 282,091 + -0.9 282,092 - -0.6 282,092 - -0.7 282,092 - +0.2 282,092 - +0.9 282,092 - +0.8 282,092 - +0.2 282,240 + -0.3 282,240 + -0.2 282,240 + -1.1 282,241 - -2.0 282,241 - -0.3 282,414 + +0.2 282,559 + -0.3 282,730 + MPMX19_03990 0.22 +0.4 282,730 + MPMX19_03990 0.22 -0.4 282,730 + MPMX19_03990 0.22 -2.0 282,730 + MPMX19_03990 0.22 +0.2 282,730 + MPMX19_03990 0.22 -0.6 282,730 + MPMX19_03990 0.22 +0.7 282,730 + MPMX19_03990 0.22 +0.4 282,730 + MPMX19_03990 0.22 +0.2 282,730 + MPMX19_03990 0.22 -1.2 282,730 + MPMX19_03990 0.22 +0.1 282,730 + MPMX19_03990 0.22 +0.1 282,730 + MPMX19_03990 0.22 -1.5 282,730 + MPMX19_03990 0.22 -1.9 282,730 + MPMX19_03990 0.22 -2.2 282,730 + MPMX19_03990 0.22 +0.9 282,730 + MPMX19_03990 0.22 -1.0 282,731 - MPMX19_03990 0.22 +0.0 282,731 - MPMX19_03990 0.22 +0.6 282,731 - MPMX19_03990 0.22 -0.7 282,731 - MPMX19_03990 0.22 -0.6 282,731 - MPMX19_03990 0.22 +0.2 282,731 - MPMX19_03990 0.22 +0.8 282,731 - MPMX19_03990 0.22 -0.1 282,731 - MPMX19_03990 0.22 +0.9 283,063 + MPMX19_03990 0.50 +0.1 283,063 + MPMX19_03990 0.50 +0.4 283,063 + MPMX19_03990 0.50 +0.1 283,063 + MPMX19_03990 0.50 -0.5 283,063 + MPMX19_03990 0.50 +0.0 283,063 + MPMX19_03990 0.50 +1.2 283,064 - MPMX19_03990 0.50 +0.2 283,064 - MPMX19_03990 0.50 -1.0 283,064 - MPMX19_03990 0.50 +0.3 283,064 - MPMX19_03990 0.50 +1.6 283,064 - MPMX19_03990 0.50 -0.1 283,064 - MPMX19_03990 0.50 -1.5 283,064 - MPMX19_03990 0.50 +0.4 283,064 - MPMX19_03990 0.50 -0.5 283,100 - MPMX19_03990 0.53 -0.3 283,100 - MPMX19_03990 0.53 -1.2
Or see this region's nucleotide sequence