Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03977 and MPMX19_03978 overlap by 20 nucleotides MPMX19_03978 and MPMX19_03979 are separated by 254 nucleotides MPMX19_03979 and MPMX19_03980 are separated by 165 nucleotides
MPMX19_03977: MPMX19_03977 - Diaminopropionate ammonia-lyase, at 267,525 to 268,778
_03977
MPMX19_03978: MPMX19_03978 - hypothetical protein, at 268,759 to 269,481
_03978
MPMX19_03979: MPMX19_03979 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 269,736 to 271,187
_03979
MPMX19_03980: MPMX19_03980 - Sensor protein FixL, at 271,353 to 273,155
_03980
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 268.994 kb on + strand, within MPMX19_03978 at 269.015 kb on + strand, within MPMX19_03978 at 269.015 kb on + strand, within MPMX19_03978 at 269.015 kb on + strand, within MPMX19_03978 at 269.015 kb on + strand, within MPMX19_03978 at 269.015 kb on + strand, within MPMX19_03978 at 269.016 kb on - strand, within MPMX19_03978 at 269.016 kb on - strand, within MPMX19_03978 at 269.016 kb on - strand, within MPMX19_03978 at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.543 kb on + strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.544 kb on - strand at 269.572 kb on + strand at 269.572 kb on + strand at 269.572 kb on + strand at 269.572 kb on + strand at 269.584 kb on + strand at 269.585 kb on - strand at 271.287 kb on - strand at 271.428 kb on + strand at 271.429 kb on - strand at 271.429 kb on - strand at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.758 kb on + strand, within MPMX19_03980 at 271.758 kb on + strand, within MPMX19_03980 at 271.758 kb on + strand, within MPMX19_03980 at 271.759 kb on - strand, within MPMX19_03980 at 271.759 kb on - strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.846 kb on - strand, within MPMX19_03980 at 271.945 kb on + strand, within MPMX19_03980 at 272.058 kb on + strand, within MPMX19_03980 at 272.058 kb on + strand, within MPMX19_03980 at 272.058 kb on + strand, within MPMX19_03980 at 272.059 kb on - strand, within MPMX19_03980 at 272.059 kb on - strand, within MPMX19_03980 at 272.059 kb on - strand, within MPMX19_03980
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 268,994 + MPMX19_03978 0.33 -1.6 269,015 + MPMX19_03978 0.35 -0.1 269,015 + MPMX19_03978 0.35 +0.1 269,015 + MPMX19_03978 0.35 -0.4 269,015 + MPMX19_03978 0.35 +0.7 269,015 + MPMX19_03978 0.35 +0.3 269,016 - MPMX19_03978 0.36 +0.2 269,016 - MPMX19_03978 0.36 -1.1 269,016 - MPMX19_03978 0.36 -0.7 269,543 + -1.2 269,543 + -0.0 269,543 + -0.8 269,543 + -0.8 269,543 + +0.6 269,543 + -0.7 269,543 + +1.0 269,543 + +0.2 269,543 + -0.6 269,543 + +0.7 269,543 + -1.0 269,543 + -2.0 269,543 + -0.3 269,543 + -0.1 269,543 + +0.5 269,543 + -0.7 269,543 + +1.3 269,543 + -0.7 269,543 + -0.1 269,543 + -0.9 269,543 + -0.1 269,543 + -2.3 269,543 + +1.3 269,543 + -1.3 269,543 + -2.3 269,543 + +0.7 269,543 + -0.1 269,544 - -0.9 269,544 - -0.2 269,544 - -0.3 269,544 - -0.8 269,544 - -1.8 269,544 - -0.4 269,544 - +0.2 269,544 - -0.3 269,544 - -0.2 269,544 - -0.7 269,544 - +0.4 269,544 - -0.9 269,544 - -0.5 269,544 - +0.8 269,544 - +0.4 269,544 - -1.8 269,544 - -1.3 269,544 - -0.3 269,544 - -0.4 269,544 - -1.7 269,544 - -1.0 269,544 - -1.6 269,544 - -1.5 269,544 - -0.8 269,544 - -1.3 269,544 - +0.6 269,544 - -0.4 269,544 - -0.2 269,544 - -0.2 269,572 + -1.3 269,572 + -0.5 269,572 + -1.2 269,572 + -1.2 269,584 + +0.0 269,585 - -0.9 271,287 - +0.0 271,428 + +0.6 271,429 - +0.1 271,429 - +0.2 271,746 + MPMX19_03980 0.22 -0.1 271,746 + MPMX19_03980 0.22 +2.1 271,746 + MPMX19_03980 0.22 -2.1 271,746 + MPMX19_03980 0.22 -0.6 271,746 + MPMX19_03980 0.22 +1.0 271,746 + MPMX19_03980 0.22 -1.7 271,747 - MPMX19_03980 0.22 -0.2 271,747 - MPMX19_03980 0.22 -0.2 271,747 - MPMX19_03980 0.22 +1.3 271,747 - MPMX19_03980 0.22 -1.9 271,752 + MPMX19_03980 0.22 -0.7 271,752 + MPMX19_03980 0.22 -0.4 271,752 + MPMX19_03980 0.22 -0.0 271,752 + MPMX19_03980 0.22 -0.2 271,753 - MPMX19_03980 0.22 -0.3 271,753 - MPMX19_03980 0.22 -1.1 271,753 - MPMX19_03980 0.22 -3.0 271,753 - MPMX19_03980 0.22 -0.7 271,758 + MPMX19_03980 0.22 -0.8 271,758 + MPMX19_03980 0.22 +0.0 271,758 + MPMX19_03980 0.22 +0.2 271,759 - MPMX19_03980 0.23 -1.8 271,759 - MPMX19_03980 0.23 +1.1 271,845 + MPMX19_03980 0.27 +1.2 271,845 + MPMX19_03980 0.27 -1.3 271,845 + MPMX19_03980 0.27 +1.1 271,845 + MPMX19_03980 0.27 -0.9 271,846 - MPMX19_03980 0.27 -0.4 271,945 + MPMX19_03980 0.33 -1.7 272,058 + MPMX19_03980 0.39 +1.6 272,058 + MPMX19_03980 0.39 -0.5 272,058 + MPMX19_03980 0.39 +0.7 272,059 - MPMX19_03980 0.39 -1.2 272,059 - MPMX19_03980 0.39 -1.8 272,059 - MPMX19_03980 0.39 -0.2
Or see this region's nucleotide sequence