Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03948 and MPMX19_03949 are separated by 258 nucleotides MPMX19_03949 and MPMX19_03950 are separated by 77 nucleotides
MPMX19_03948: MPMX19_03948 - tRNA-Ser, at 235,838 to 235,929
_03948
MPMX19_03949: MPMX19_03949 - hypothetical protein, at 236,188 to 236,757
_03949
MPMX19_03950: MPMX19_03950 - Acetyl-coenzyme A synthetase, at 236,835 to 238,643
_03950
Position (kb) 235
236 Strain fitness (log2 ratio) -2
-1
0
1 at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.911 kb on - strand, within MPMX19_03948 at 235.911 kb on - strand, within MPMX19_03948 at 235.935 kb on - strand at 236.061 kb on - strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.303 kb on + strand, within MPMX19_03949 at 236.303 kb on + strand, within MPMX19_03949 at 236.303 kb on + strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.313 kb on - strand, within MPMX19_03949 at 236.313 kb on - strand, within MPMX19_03949 at 236.486 kb on + strand, within MPMX19_03949 at 236.487 kb on - strand, within MPMX19_03949 at 236.487 kb on - strand, within MPMX19_03949 at 236.627 kb on + strand, within MPMX19_03949 at 236.627 kb on + strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.836 kb on + strand at 236.837 kb on - strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 235,634 + -0.2 235,634 + +0.1 235,634 + +0.0 235,634 + -1.0 235,634 + -0.3 235,634 + -0.3 235,634 + -0.2 235,635 - -0.1 235,635 - +0.1 235,635 - -0.5 235,635 - -0.7 235,635 - +0.2 235,635 - -0.7 235,911 - MPMX19_03948 0.79 -0.5 235,911 - MPMX19_03948 0.79 -1.0 235,935 - -0.0 236,061 - +0.2 236,159 + -0.3 236,159 + +0.3 236,159 + +0.5 236,159 + -0.9 236,159 + -2.0 236,159 + -0.3 236,159 + -1.1 236,159 + +0.9 236,159 + +0.0 236,159 + +1.4 236,159 + -0.2 236,159 + -0.4 236,159 + -0.9 236,159 + -1.2 236,159 + +1.2 236,159 + -0.4 236,159 + -0.2 236,159 + -0.3 236,160 - +0.2 236,160 - -1.0 236,160 - +0.2 236,160 - +1.3 236,160 - -1.2 236,160 - +0.8 236,160 - +0.4 236,160 - +0.3 236,160 - +0.2 236,160 - -1.2 236,160 - +0.1 236,160 - -0.3 236,160 - -2.4 236,160 - +0.5 236,160 - -0.0 236,160 - +0.6 236,160 - +0.0 236,160 - -1.6 236,160 - -2.0 236,160 - +0.0 236,160 - -1.4 236,160 - -1.7 236,303 + MPMX19_03949 0.20 -0.4 236,303 + MPMX19_03949 0.20 -0.8 236,303 + MPMX19_03949 0.20 -0.5 236,304 - MPMX19_03949 0.20 -0.6 236,304 - MPMX19_03949 0.20 +0.8 236,304 - MPMX19_03949 0.20 -0.0 236,304 - MPMX19_03949 0.20 -0.5 236,304 - MPMX19_03949 0.20 -0.4 236,312 + MPMX19_03949 0.22 +1.4 236,312 + MPMX19_03949 0.22 +1.0 236,312 + MPMX19_03949 0.22 +0.7 236,313 - MPMX19_03949 0.22 -0.8 236,313 - MPMX19_03949 0.22 -0.4 236,486 + MPMX19_03949 0.52 -1.5 236,487 - MPMX19_03949 0.52 -1.2 236,487 - MPMX19_03949 0.52 +0.5 236,627 + MPMX19_03949 0.77 +0.3 236,627 + MPMX19_03949 0.77 -1.6 236,628 - MPMX19_03949 0.77 -0.5 236,628 - MPMX19_03949 0.77 -1.0 236,628 - MPMX19_03949 0.77 -0.9 236,628 - MPMX19_03949 0.77 +0.4 236,628 - MPMX19_03949 0.77 +0.4 236,628 - MPMX19_03949 0.77 +1.2 236,810 + +0.8 236,810 + -0.6 236,810 + -1.3 236,810 + -0.3 236,810 + -0.2 236,810 + +0.4 236,811 - +0.2 236,811 - +1.4 236,811 - +0.2 236,811 - +0.6 236,811 - -0.6 236,811 - +0.8 236,811 - +0.6 236,811 - -0.2 236,811 - +0.6 236,811 - -0.6 236,836 + +1.2 236,837 - -0.6 236,929 + -0.8 236,929 + -0.5 236,929 + -0.7 236,929 + +0.3 236,929 + +0.2 236,929 + +0.0 236,929 + -1.8 236,929 + +0.6 236,929 + -0.2 236,929 + -2.1 236,929 + -0.0 236,929 + -0.1 236,929 + -0.4
Or see this region's nucleotide sequence