Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03947

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03946 and MPMX19_03947 are separated by 132 nucleotides MPMX19_03946: MPMX19_03946 - Adaptive-response sensory-kinase SasA, at 230,700 to 232,304 _03946 MPMX19_03947: MPMX19_03947 - Leucine-responsive regulatory protein, at 232,437 to 232,931 _03947 Position (kb) 232 233Strain fitness (log2 ratio) -2 -1 0 1 2 3at 231.861 kb on + strand, within MPMX19_03946at 231.861 kb on + strand, within MPMX19_03946at 231.861 kb on + strand, within MPMX19_03946at 231.862 kb on - strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.110 kb on + strand, within MPMX19_03946at 232.111 kb on - strand, within MPMX19_03946at 232.111 kb on - strand, within MPMX19_03946at 232.111 kb on - strand, within MPMX19_03946at 232.111 kb on - strand, within MPMX19_03946at 232.361 kb on + strandat 232.362 kb on - strandat 232.397 kb on - strandat 232.596 kb on + strand, within MPMX19_03947at 232.596 kb on + strand, within MPMX19_03947at 232.596 kb on + strand, within MPMX19_03947at 232.596 kb on + strand, within MPMX19_03947at 232.596 kb on + strand, within MPMX19_03947at 232.596 kb on + strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.597 kb on - strand, within MPMX19_03947at 232.736 kb on + strand, within MPMX19_03947at 232.736 kb on + strand, within MPMX19_03947at 232.736 kb on + strand, within MPMX19_03947at 232.736 kb on + strand, within MPMX19_03947at 232.736 kb on + strand, within MPMX19_03947at 232.736 kb on + strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.737 kb on - strand, within MPMX19_03947at 232.758 kb on + strand, within MPMX19_03947at 232.758 kb on + strand, within MPMX19_03947at 232.759 kb on - strand, within MPMX19_03947at 232.759 kb on - strand, within MPMX19_03947at 232.759 kb on - strand, within MPMX19_03947at 232.759 kb on - strand, within MPMX19_03947at 232.795 kb on - strand, within MPMX19_03947at 232.795 kb on - strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.854 kb on + strand, within MPMX19_03947at 232.855 kb on - strand, within MPMX19_03947at 232.855 kb on - strand, within MPMX19_03947at 232.855 kb on - strand, within MPMX19_03947at 232.855 kb on - strand, within MPMX19_03947at 232.855 kb on - strand, within MPMX19_03947at 232.855 kb on - strand, within MPMX19_03947at 232.855 kb on - strand, within MPMX19_03947at 232.944 kb on + strandat 232.944 kb on + strandat 232.944 kb on + strandat 232.945 kb on - strandat 232.945 kb on - strandat 232.945 kb on - strandat 232.946 kb on + strandat 232.946 kb on + strandat 232.946 kb on + strandat 232.946 kb on + strandat 232.947 kb on - strandat 232.947 kb on - strandat 232.947 kb on - strandat 232.947 kb on - strandat 232.947 kb on - strandat 232.947 kb on - strandat 232.947 kb on - strandat 232.947 kb on - strandat 232.968 kb on + strandat 233.066 kb on + strandat 233.067 kb on - strandat 233.077 kb on + strandat 233.077 kb on + strandat 233.078 kb on - strandat 233.184 kb on + strandat 233.184 kb on + strandat 233.185 kb on - strandat 233.185 kb on - strandat 233.483 kb on + strandat 233.483 kb on + strandat 233.483 kb on + strandat 233.484 kb on - strandat 233.484 kb on - strandat 233.484 kb on - strandat 233.537 kb on + strandat 233.537 kb on + strandat 233.537 kb on + strandat 233.537 kb on + strandat 233.538 kb on - strandat 233.538 kb on - strandat 233.538 kb on - strandat 233.538 kb on - strandat 233.538 kb on - strandat 233.594 kb on + strandat 233.594 kb on + strandat 233.595 kb on - strandat 233.595 kb on - strandat 233.595 kb on - strandat 233.595 kb on - strandat 233.595 kb on - strandat 233.595 kb on - strandat 233.595 kb on - strandat 233.648 kb on + strandat 233.649 kb on - strandat 233.804 kb on + strandat 233.804 kb on + strandat 233.804 kb on + strandat 233.804 kb on + strandat 233.804 kb on + strandat 233.805 kb on - strandat 233.805 kb on - strandat 233.843 kb on - strandat 233.877 kb on + strandat 233.877 kb on + strandat 233.877 kb on + strandat 233.878 kb on - strandat 233.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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231,861 + MPMX19_03946 0.72 +1.0
231,861 + MPMX19_03946 0.72 -0.5
231,861 + MPMX19_03946 0.72 -0.2
231,862 - MPMX19_03946 0.72 -0.8
232,110 + MPMX19_03946 0.88 -1.8
232,110 + MPMX19_03946 0.88 +1.4
232,110 + MPMX19_03946 0.88 -1.4
232,110 + MPMX19_03946 0.88 -1.4
232,110 + MPMX19_03946 0.88 -0.1
232,110 + MPMX19_03946 0.88 -1.7
232,110 + MPMX19_03946 0.88 -0.0
232,110 + MPMX19_03946 0.88 -2.2
232,110 + MPMX19_03946 0.88 -1.3
232,111 - MPMX19_03946 0.88 +0.6
232,111 - MPMX19_03946 0.88 -0.5
232,111 - MPMX19_03946 0.88 -1.6
232,111 - MPMX19_03946 0.88 -0.2
232,361 + +0.2
232,362 - +1.6
232,397 - -1.7
232,596 + MPMX19_03947 0.32 +2.9
232,596 + MPMX19_03947 0.32 -0.2
232,596 + MPMX19_03947 0.32 -1.2
232,596 + MPMX19_03947 0.32 +0.1
232,596 + MPMX19_03947 0.32 -0.7
232,596 + MPMX19_03947 0.32 -1.2
232,597 - MPMX19_03947 0.32 -1.6
232,597 - MPMX19_03947 0.32 +0.8
232,597 - MPMX19_03947 0.32 -0.6
232,597 - MPMX19_03947 0.32 -0.7
232,597 - MPMX19_03947 0.32 -1.1
232,597 - MPMX19_03947 0.32 -0.7
232,597 - MPMX19_03947 0.32 +1.6
232,597 - MPMX19_03947 0.32 -0.6
232,736 + MPMX19_03947 0.60 -0.7
232,736 + MPMX19_03947 0.60 -0.8
232,736 + MPMX19_03947 0.60 -1.7
232,736 + MPMX19_03947 0.60 -1.5
232,736 + MPMX19_03947 0.60 -0.1
232,736 + MPMX19_03947 0.60 -1.2
232,737 - MPMX19_03947 0.61 -1.0
232,737 - MPMX19_03947 0.61 -0.5
232,737 - MPMX19_03947 0.61 -1.0
232,737 - MPMX19_03947 0.61 -0.3
232,737 - MPMX19_03947 0.61 +0.6
232,737 - MPMX19_03947 0.61 -1.1
232,737 - MPMX19_03947 0.61 -1.2
232,737 - MPMX19_03947 0.61 -0.3
232,737 - MPMX19_03947 0.61 +0.1
232,737 - MPMX19_03947 0.61 +0.3
232,758 + MPMX19_03947 0.65 +0.3
232,758 + MPMX19_03947 0.65 -0.8
232,759 - MPMX19_03947 0.65 -1.6
232,759 - MPMX19_03947 0.65 -0.5
232,759 - MPMX19_03947 0.65 -0.3
232,759 - MPMX19_03947 0.65 -0.7
232,795 - MPMX19_03947 0.72 +1.3
232,795 - MPMX19_03947 0.72 -1.0
232,854 + MPMX19_03947 0.84 -1.4
232,854 + MPMX19_03947 0.84 +0.3
232,854 + MPMX19_03947 0.84 +2.5
232,854 + MPMX19_03947 0.84 -1.2
232,854 + MPMX19_03947 0.84 -0.9
232,854 + MPMX19_03947 0.84 -1.4
232,854 + MPMX19_03947 0.84 -0.8
232,854 + MPMX19_03947 0.84 -0.0
232,854 + MPMX19_03947 0.84 -2.5
232,855 - MPMX19_03947 0.84 +0.3
232,855 - MPMX19_03947 0.84 -1.0
232,855 - MPMX19_03947 0.84 +0.3
232,855 - MPMX19_03947 0.84 +0.2
232,855 - MPMX19_03947 0.84 -1.0
232,855 - MPMX19_03947 0.84 +0.0
232,855 - MPMX19_03947 0.84 +0.9
232,944 + -1.2
232,944 + -0.6
232,944 + -0.7
232,945 - -1.3
232,945 - +0.6
232,945 - -0.3
232,946 + +0.6
232,946 + +0.3
232,946 + -0.1
232,946 + -0.6
232,947 - -1.0
232,947 - -1.6
232,947 - -0.6
232,947 - +0.8
232,947 - +0.4
232,947 - +0.6
232,947 - -0.2
232,947 - +0.3
232,968 + -0.7
233,066 + -0.7
233,067 - -1.7
233,077 + -1.9
233,077 + -1.6
233,078 - -0.1
233,184 + +0.0
233,184 + -1.9
233,185 - +0.9
233,185 - -0.7
233,483 + -1.1
233,483 + -0.3
233,483 + +0.6
233,484 - -0.4
233,484 - -1.7
233,484 - +0.5
233,537 + -1.6
233,537 + +0.9
233,537 + -0.2
233,537 + +0.3
233,538 - +0.1
233,538 - -0.1
233,538 - -1.2
233,538 - -0.2
233,538 - -0.6
233,594 + +0.6
233,594 + -0.8
233,595 - -0.3
233,595 - +0.6
233,595 - +1.3
233,595 - -1.4
233,595 - -1.4
233,595 - +0.1
233,595 - +1.6
233,648 + -1.3
233,649 - -0.6
233,804 + -2.1
233,804 + -0.7
233,804 + +0.5
233,804 + -0.9
233,804 + -1.1
233,805 - -1.4
233,805 - -1.6
233,843 - -1.4
233,877 + -1.1
233,877 + -0.4
233,877 + -0.1
233,878 - +1.2
233,878 - -0.0

Or see this region's nucleotide sequence