Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03936 and MPMX19_03937 are separated by 160 nucleotides MPMX19_03937 and MPMX19_03938 are separated by 42 nucleotides
MPMX19_03936: MPMX19_03936 - Acetyl-CoA acetyltransferase, at 216,671 to 217,852
_03936
MPMX19_03937: MPMX19_03937 - Acyl-CoA dehydrogenase, at 218,013 to 219,146
_03937
MPMX19_03938: MPMX19_03938 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 219,189 to 220,796
_03938
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.867 kb on + strand at 217.867 kb on + strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.924 kb on - strand at 217.959 kb on + strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.988 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.583 kb on + strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.145 kb on - strand at 219.145 kb on - strand at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 217,040 + MPMX19_03936 0.31 -2.4 217,040 + MPMX19_03936 0.31 -0.3 217,040 + MPMX19_03936 0.31 -0.6 217,041 - MPMX19_03936 0.31 -0.7 217,041 - MPMX19_03936 0.31 -1.2 217,041 - MPMX19_03936 0.31 +1.0 217,127 + MPMX19_03936 0.39 -0.7 217,127 + MPMX19_03936 0.39 -0.1 217,127 + MPMX19_03936 0.39 -2.1 217,127 + MPMX19_03936 0.39 -0.5 217,127 + MPMX19_03936 0.39 -0.4 217,127 + MPMX19_03936 0.39 +0.3 217,127 + MPMX19_03936 0.39 -1.6 217,128 - MPMX19_03936 0.39 +0.6 217,128 - MPMX19_03936 0.39 +0.0 217,128 - MPMX19_03936 0.39 -0.4 217,128 - MPMX19_03936 0.39 -2.2 217,178 + MPMX19_03936 0.43 +0.1 217,178 + MPMX19_03936 0.43 -2.2 217,179 - MPMX19_03936 0.43 +1.2 217,179 - MPMX19_03936 0.43 +1.0 217,179 - MPMX19_03936 0.43 -2.1 217,775 + -0.2 217,775 + -0.6 217,775 + -0.0 217,775 + -1.6 217,776 - +0.4 217,776 - -0.7 217,776 - +0.7 217,850 + +1.3 217,850 + -1.6 217,850 + -1.0 217,850 + -0.5 217,850 + +0.9 217,850 + +1.2 217,850 + +0.8 217,850 + -0.8 217,851 - +0.2 217,851 - +0.2 217,851 - -0.1 217,851 - +0.6 217,851 - -0.3 217,851 - -1.1 217,851 - +0.2 217,851 - +0.1 217,867 + -0.4 217,867 + +0.0 217,868 - +0.4 217,868 - -0.1 217,868 - +0.0 217,868 - +2.2 217,868 - +0.2 217,868 - -0.3 217,868 - -0.4 217,924 - -1.1 217,959 + +1.1 217,960 - -1.6 217,960 - -1.6 217,960 - +0.8 217,960 - +2.2 217,960 - -1.0 217,960 - -1.0 217,988 + -2.0 217,990 + -0.9 217,990 + +1.0 217,990 + +0.1 217,990 + -0.3 217,990 + +0.4 217,990 + -1.6 217,990 + +0.4 217,990 + -1.0 217,990 + +0.9 217,990 + +0.6 217,990 + +0.4 218,211 + MPMX19_03937 0.17 +0.3 218,211 + MPMX19_03937 0.17 +1.9 218,211 + MPMX19_03937 0.17 +0.2 218,211 + MPMX19_03937 0.17 -0.4 218,212 - MPMX19_03937 0.18 -2.9 218,212 - MPMX19_03937 0.18 +0.4 218,583 + MPMX19_03937 0.50 -1.6 218,701 - MPMX19_03937 0.61 +1.3 218,701 - MPMX19_03937 0.61 -0.7 218,797 - MPMX19_03937 0.69 +0.8 218,797 - MPMX19_03937 0.69 -1.7 218,797 - MPMX19_03937 0.69 -0.8 218,797 - MPMX19_03937 0.69 +0.0 219,033 + +0.9 219,033 + -0.9 219,033 + -0.4 219,033 + +0.5 219,033 + -1.0 219,033 + -1.0 219,033 + -0.7 219,033 + -0.2 219,033 + +0.5 219,034 - -0.2 219,034 - +0.2 219,034 - -0.1 219,034 - -1.5 219,034 - +1.6 219,063 + +1.2 219,063 + -0.5 219,063 + -0.7 219,063 + +0.9 219,063 + +0.0 219,064 - -0.7 219,064 - -0.3 219,064 - -0.8 219,064 - +0.3 219,090 + -3.2 219,090 + +1.0 219,090 + -1.0 219,090 + -0.5 219,090 + +0.6 219,090 + +1.2 219,090 + -0.6 219,090 + +0.3 219,090 + +0.6 219,091 - +0.6 219,091 - +1.6 219,091 - +0.4 219,091 - +1.4 219,091 - -1.6 219,091 - -0.2 219,091 - -0.1 219,091 - -1.8 219,091 - -0.1 219,144 + +0.7 219,144 + -0.4 219,144 + +2.1 219,144 + +0.0 219,145 - +0.8 219,145 - +0.1 219,432 + MPMX19_03938 0.15 -0.8 219,432 + MPMX19_03938 0.15 +1.0 219,432 + MPMX19_03938 0.15 +0.2 219,432 + MPMX19_03938 0.15 -1.0 219,432 + MPMX19_03938 0.15 +0.4 219,432 + MPMX19_03938 0.15 -0.8 219,433 - MPMX19_03938 0.15 -1.4 219,433 - MPMX19_03938 0.15 +0.0 219,537 + MPMX19_03938 0.22 -1.1 219,537 + MPMX19_03938 0.22 -1.0 219,537 + MPMX19_03938 0.22 -1.8 219,537 + MPMX19_03938 0.22 -1.8 219,537 + MPMX19_03938 0.22 -0.2 219,537 + MPMX19_03938 0.22 -1.4 219,537 + MPMX19_03938 0.22 -1.1 219,537 + MPMX19_03938 0.22 -1.7 219,537 + MPMX19_03938 0.22 -1.0 219,537 + MPMX19_03938 0.22 -1.6 219,537 + MPMX19_03938 0.22 -0.6 219,537 + MPMX19_03938 0.22 -0.3 219,537 + MPMX19_03938 0.22 -1.6 219,537 + MPMX19_03938 0.22 +0.2 219,538 - MPMX19_03938 0.22 -1.4 219,538 - MPMX19_03938 0.22 -1.0 219,538 - MPMX19_03938 0.22 +0.6 219,538 - MPMX19_03938 0.22 -1.0 219,538 - MPMX19_03938 0.22 -0.5 219,538 - MPMX19_03938 0.22 +1.6 219,538 - MPMX19_03938 0.22 -0.8 219,538 - MPMX19_03938 0.22 +1.0 219,538 - MPMX19_03938 0.22 -0.2 219,538 - MPMX19_03938 0.22 +0.6 219,538 - MPMX19_03938 0.22 +1.6 219,538 - MPMX19_03938 0.22 -0.7 219,540 + MPMX19_03938 0.22 +0.0 219,540 + MPMX19_03938 0.22 -2.0 219,609 + MPMX19_03938 0.26 +0.0 219,609 + MPMX19_03938 0.26 -0.8 219,609 + MPMX19_03938 0.26 -1.3 219,609 + MPMX19_03938 0.26 -0.7 219,609 + MPMX19_03938 0.26 +0.2 219,609 + MPMX19_03938 0.26 -0.2 219,609 + MPMX19_03938 0.26 +0.6 219,609 + MPMX19_03938 0.26 +0.4 219,609 + MPMX19_03938 0.26 -0.8 219,609 + MPMX19_03938 0.26 -0.4 219,609 + MPMX19_03938 0.26 -0.3 219,609 + MPMX19_03938 0.26 -0.3 219,610 - MPMX19_03938 0.26 -1.0 219,610 - MPMX19_03938 0.26 -0.4 219,610 - MPMX19_03938 0.26 -0.4 219,610 - MPMX19_03938 0.26 -2.1 219,610 - MPMX19_03938 0.26 +0.2 219,610 - MPMX19_03938 0.26 +1.6 219,610 - MPMX19_03938 0.26 +0.8 219,610 - MPMX19_03938 0.26 -0.7 219,610 - MPMX19_03938 0.26 +0.5 219,610 - MPMX19_03938 0.26 +0.2 219,610 - MPMX19_03938 0.26 -1.2 219,610 - MPMX19_03938 0.26 -0.8 219,610 - MPMX19_03938 0.26 -0.1 219,610 - MPMX19_03938 0.26 -0.1 219,610 - MPMX19_03938 0.26 -0.1 219,610 - MPMX19_03938 0.26 +0.2 219,690 + MPMX19_03938 0.31 +0.4 219,690 + MPMX19_03938 0.31 -0.6 219,690 + MPMX19_03938 0.31 -0.7 219,690 + MPMX19_03938 0.31 +0.6 219,690 + MPMX19_03938 0.31 -0.9 219,691 - MPMX19_03938 0.31 -0.7 219,691 - MPMX19_03938 0.31 +0.8 219,691 - MPMX19_03938 0.31 +0.4 219,691 - MPMX19_03938 0.31 -2.1 219,768 + MPMX19_03938 0.36 +0.2 219,768 + MPMX19_03938 0.36 -0.6 219,768 + MPMX19_03938 0.36 -0.5 219,768 + MPMX19_03938 0.36 -2.2 219,768 + MPMX19_03938 0.36 -2.2 219,768 + MPMX19_03938 0.36 +0.2 219,768 + MPMX19_03938 0.36 +0.1 219,768 + MPMX19_03938 0.36 +0.5 219,768 + MPMX19_03938 0.36 -0.3 219,768 + MPMX19_03938 0.36 +0.8 219,768 + MPMX19_03938 0.36 -2.5 219,768 + MPMX19_03938 0.36 -1.4 219,768 + MPMX19_03938 0.36 -0.3 219,768 + MPMX19_03938 0.36 -0.9 219,769 - MPMX19_03938 0.36 -0.4 219,769 - MPMX19_03938 0.36 +1.4 219,769 - MPMX19_03938 0.36 -0.1 219,769 - MPMX19_03938 0.36 +0.3 219,769 - MPMX19_03938 0.36 -0.8 219,769 - MPMX19_03938 0.36 -2.2 219,931 - MPMX19_03938 0.46 -0.7 219,931 - MPMX19_03938 0.46 +0.2 219,931 - MPMX19_03938 0.46 -0.5 220,056 + MPMX19_03938 0.54 +1.9 220,056 + MPMX19_03938 0.54 -0.2 220,056 + MPMX19_03938 0.54 +0.2 220,056 + MPMX19_03938 0.54 +0.5 220,056 + MPMX19_03938 0.54 -0.4 220,056 + MPMX19_03938 0.54 -0.3 220,056 + MPMX19_03938 0.54 +0.6 220,056 + MPMX19_03938 0.54 -1.1 220,057 - MPMX19_03938 0.54 +0.8 220,057 - MPMX19_03938 0.54 +1.0 220,057 - MPMX19_03938 0.54 +0.8 220,057 - MPMX19_03938 0.54 -1.7 220,057 - MPMX19_03938 0.54 -0.3 220,057 - MPMX19_03938 0.54 +0.5 220,057 - MPMX19_03938 0.54 +0.4 220,057 - MPMX19_03938 0.54 +0.6
Or see this region's nucleotide sequence