Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03906

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03905 and MPMX19_03906 are separated by 80 nucleotidesMPMX19_03906 and MPMX19_03907 are separated by 202 nucleotides MPMX19_03905: MPMX19_03905 - Sialic acid TRAP transporter permease protein SiaT, at 180,730 to 182,604 _03905 MPMX19_03906: MPMX19_03906 - Pca regulon regulatory protein, at 182,685 to 183,542 _03906 MPMX19_03907: MPMX19_03907 - Short-chain-enoyl-CoA hydratase, at 183,745 to 184,521 _03907 Position (kb) 182 183 184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 182.077 kb on + strand, within MPMX19_03905at 182.078 kb on - strand, within MPMX19_03905at 182.078 kb on - strand, within MPMX19_03905at 182.078 kb on - strand, within MPMX19_03905at 182.104 kb on + strand, within MPMX19_03905at 182.104 kb on + strand, within MPMX19_03905at 182.104 kb on + strand, within MPMX19_03905at 182.105 kb on - strand, within MPMX19_03905at 182.407 kb on + strand, within MPMX19_03905at 182.407 kb on + strand, within MPMX19_03905at 182.407 kb on + strand, within MPMX19_03905at 182.407 kb on + strand, within MPMX19_03905at 182.407 kb on + strand, within MPMX19_03905at 182.407 kb on + strand, within MPMX19_03905at 182.407 kb on + strand, within MPMX19_03905at 182.408 kb on - strand, within MPMX19_03905at 182.408 kb on - strand, within MPMX19_03905at 182.408 kb on - strand, within MPMX19_03905at 182.408 kb on - strand, within MPMX19_03905at 182.408 kb on - strand, within MPMX19_03905at 182.473 kb on + strandat 182.473 kb on + strandat 182.473 kb on + strandat 182.473 kb on + strandat 182.473 kb on + strandat 182.473 kb on + strandat 182.473 kb on + strandat 182.474 kb on - strandat 182.474 kb on - strandat 182.474 kb on - strandat 182.474 kb on - strandat 182.533 kb on + strandat 182.534 kb on - strandat 182.534 kb on - strandat 182.603 kb on - strandat 182.603 kb on - strandat 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.872 kb on + strand, within MPMX19_03906at 182.873 kb on - strand, within MPMX19_03906at 182.873 kb on - strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.170 kb on - strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.277 kb on + strand, within MPMX19_03906at 183.277 kb on + strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.576 kb on - strandat 183.576 kb on - strandat 183.576 kb on - strandat 183.576 kb on - strandat 183.589 kb on + strandat 183.867 kb on + strand, within MPMX19_03907at 183.867 kb on + strand, within MPMX19_03907at 183.867 kb on + strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 184.009 kb on + strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.448 kb on - strandat 184.448 kb on - strandat 184.448 kb on - strandat 184.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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182,077 + MPMX19_03905 0.72 -0.7
182,078 - MPMX19_03905 0.72 +0.6
182,078 - MPMX19_03905 0.72 +1.2
182,078 - MPMX19_03905 0.72 +0.1
182,104 + MPMX19_03905 0.73 +0.3
182,104 + MPMX19_03905 0.73 -1.5
182,104 + MPMX19_03905 0.73 -0.5
182,105 - MPMX19_03905 0.73 +0.9
182,407 + MPMX19_03905 0.89 +0.2
182,407 + MPMX19_03905 0.89 +0.9
182,407 + MPMX19_03905 0.89 +0.9
182,407 + MPMX19_03905 0.89 -0.7
182,407 + MPMX19_03905 0.89 +1.8
182,407 + MPMX19_03905 0.89 -1.1
182,407 + MPMX19_03905 0.89 +0.5
182,408 - MPMX19_03905 0.89 +1.1
182,408 - MPMX19_03905 0.89 -0.5
182,408 - MPMX19_03905 0.89 +0.5
182,408 - MPMX19_03905 0.89 -1.2
182,408 - MPMX19_03905 0.89 -1.4
182,473 + -0.2
182,473 + +0.1
182,473 + +0.2
182,473 + +0.6
182,473 + -1.2
182,473 + +0.4
182,473 + +0.2
182,474 - +0.3
182,474 - +0.4
182,474 - -1.6
182,474 - +0.9
182,533 + -0.4
182,534 - -1.5
182,534 - -1.1
182,603 - +0.6
182,603 - +0.3
182,848 + MPMX19_03906 0.19 -1.9
182,848 + MPMX19_03906 0.19 -2.9
182,848 + MPMX19_03906 0.19 -1.5
182,848 + MPMX19_03906 0.19 -2.3
182,848 + MPMX19_03906 0.19 -2.4
182,849 - MPMX19_03906 0.19 -2.1
182,849 - MPMX19_03906 0.19 -1.9
182,849 - MPMX19_03906 0.19 -2.9
182,849 - MPMX19_03906 0.19 -0.9
182,849 - MPMX19_03906 0.19 -4.1
182,849 - MPMX19_03906 0.19 -2.2
182,849 - MPMX19_03906 0.19 -0.9
182,849 - MPMX19_03906 0.19 -2.8
182,872 + MPMX19_03906 0.22 -2.4
182,873 - MPMX19_03906 0.22 -1.9
182,873 - MPMX19_03906 0.22 -2.2
182,939 + MPMX19_03906 0.30 -2.2
182,939 + MPMX19_03906 0.30 -2.4
182,939 + MPMX19_03906 0.30 -2.4
182,939 + MPMX19_03906 0.30 -2.5
182,939 + MPMX19_03906 0.30 -1.5
182,939 + MPMX19_03906 0.30 -1.7
182,939 + MPMX19_03906 0.30 -2.0
182,940 - MPMX19_03906 0.30 -2.3
182,940 - MPMX19_03906 0.30 -3.7
182,940 - MPMX19_03906 0.30 -2.1
182,940 - MPMX19_03906 0.30 -2.8
182,940 - MPMX19_03906 0.30 -2.8
182,940 - MPMX19_03906 0.30 -2.4
182,940 - MPMX19_03906 0.30 -1.5
182,940 - MPMX19_03906 0.30 -3.6
182,940 - MPMX19_03906 0.30 +0.2
182,940 - MPMX19_03906 0.30 -2.6
182,940 - MPMX19_03906 0.30 -2.4
182,940 - MPMX19_03906 0.30 -2.5
182,941 + MPMX19_03906 0.30 -1.1
182,941 + MPMX19_03906 0.30 -4.7
182,941 + MPMX19_03906 0.30 -1.4
182,941 + MPMX19_03906 0.30 -1.8
182,941 + MPMX19_03906 0.30 -0.5
182,941 + MPMX19_03906 0.30 -1.2
182,941 + MPMX19_03906 0.30 -1.4
182,941 + MPMX19_03906 0.30 -1.9
182,941 + MPMX19_03906 0.30 -1.4
182,942 - MPMX19_03906 0.30 -1.4
182,942 - MPMX19_03906 0.30 -3.7
182,942 - MPMX19_03906 0.30 -1.4
182,942 - MPMX19_03906 0.30 -4.1
182,942 - MPMX19_03906 0.30 -3.6
182,942 - MPMX19_03906 0.30 -1.2
182,942 - MPMX19_03906 0.30 -2.7
182,942 - MPMX19_03906 0.30 -2.8
183,028 + MPMX19_03906 0.40 -2.4
183,028 + MPMX19_03906 0.40 -3.4
183,028 + MPMX19_03906 0.40 -1.4
183,028 + MPMX19_03906 0.40 -0.7
183,029 - MPMX19_03906 0.40 -0.2
183,029 - MPMX19_03906 0.40 -0.9
183,029 - MPMX19_03906 0.40 -1.9
183,029 - MPMX19_03906 0.40 -2.4
183,169 + MPMX19_03906 0.56 -2.8
183,169 + MPMX19_03906 0.56 -2.7
183,169 + MPMX19_03906 0.56 -3.8
183,169 + MPMX19_03906 0.56 -1.5
183,169 + MPMX19_03906 0.56 -2.1
183,169 + MPMX19_03906 0.56 -2.9
183,169 + MPMX19_03906 0.56 -0.5
183,170 - MPMX19_03906 0.57 -2.4
183,208 + MPMX19_03906 0.61 -2.5
183,208 + MPMX19_03906 0.61 -1.4
183,208 + MPMX19_03906 0.61 -0.5
183,208 + MPMX19_03906 0.61 -2.7
183,208 + MPMX19_03906 0.61 -1.5
183,208 + MPMX19_03906 0.61 -3.1
183,208 + MPMX19_03906 0.61 -1.9
183,208 + MPMX19_03906 0.61 -0.9
183,209 - MPMX19_03906 0.61 -1.8
183,209 - MPMX19_03906 0.61 -2.6
183,209 - MPMX19_03906 0.61 -1.7
183,209 - MPMX19_03906 0.61 -2.8
183,209 - MPMX19_03906 0.61 -2.9
183,209 - MPMX19_03906 0.61 -1.2
183,209 - MPMX19_03906 0.61 -2.4
183,209 - MPMX19_03906 0.61 -1.8
183,209 - MPMX19_03906 0.61 -2.3
183,209 - MPMX19_03906 0.61 -2.3
183,209 - MPMX19_03906 0.61 -3.2
183,277 + MPMX19_03906 0.69 -3.0
183,277 + MPMX19_03906 0.69 -3.4
183,278 - MPMX19_03906 0.69 -1.2
183,278 - MPMX19_03906 0.69 -2.8
183,278 - MPMX19_03906 0.69 -2.6
183,278 - MPMX19_03906 0.69 -2.4
183,298 + MPMX19_03906 0.71 -4.1
183,298 + MPMX19_03906 0.71 -2.0
183,298 + MPMX19_03906 0.71 -2.2
183,298 + MPMX19_03906 0.71 -4.5
183,298 + MPMX19_03906 0.71 -2.6
183,298 + MPMX19_03906 0.71 -2.3
183,298 + MPMX19_03906 0.71 -0.6
183,298 + MPMX19_03906 0.71 -2.1
183,299 - MPMX19_03906 0.72 -2.0
183,299 - MPMX19_03906 0.72 -2.5
183,299 - MPMX19_03906 0.72 -3.0
183,299 - MPMX19_03906 0.72 -4.1
183,299 - MPMX19_03906 0.72 -2.1
183,299 - MPMX19_03906 0.72 -2.3
183,299 - MPMX19_03906 0.72 -2.0
183,299 - MPMX19_03906 0.72 -2.3
183,299 - MPMX19_03906 0.72 -3.2
183,575 + -2.9
183,575 + -1.5
183,575 + -1.4
183,575 + -1.8
183,575 + -2.3
183,575 + -2.4
183,575 + -1.2
183,575 + -1.5
183,575 + -1.9
183,575 + -1.8
183,575 + -1.7
183,576 - +0.1
183,576 - -0.0
183,576 - +1.2
183,576 - +0.7
183,589 + -1.9
183,867 + MPMX19_03907 0.16 -0.2
183,867 + MPMX19_03907 0.16 +1.2
183,867 + MPMX19_03907 0.16 +1.4
183,868 - MPMX19_03907 0.16 -0.5
183,868 - MPMX19_03907 0.16 -1.5
183,868 - MPMX19_03907 0.16 +0.2
183,868 - MPMX19_03907 0.16 -0.3
183,868 - MPMX19_03907 0.16 -0.5
184,009 + MPMX19_03907 0.34 -0.5
184,010 - MPMX19_03907 0.34 +1.0
184,010 - MPMX19_03907 0.34 +0.2
184,010 - MPMX19_03907 0.34 -1.7
184,448 - -0.5
184,448 - +0.1
184,448 - -0.3
184,448 - -0.3

Or see this region's nucleotide sequence