Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03875

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03873 and MPMX19_03874 are separated by 28 nucleotidesMPMX19_03874 and MPMX19_03875 are separated by 178 nucleotidesMPMX19_03875 and MPMX19_03876 are separated by 128 nucleotides MPMX19_03873: MPMX19_03873 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 120,105 to 121,412 _03873 MPMX19_03874: MPMX19_03874 - hypothetical protein, at 121,441 to 121,893 _03874 MPMX19_03875: MPMX19_03875 - hypothetical protein, at 122,072 to 123,238 _03875 MPMX19_03876: MPMX19_03876 - hypothetical protein, at 123,367 to 127,248 _03876 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.565 kb on + strand, within MPMX19_03874at 121.565 kb on + strand, within MPMX19_03874at 121.565 kb on + strand, within MPMX19_03874at 121.566 kb on - strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.578 kb on - strand, within MPMX19_03874at 121.578 kb on - strand, within MPMX19_03874at 121.727 kb on + strand, within MPMX19_03874at 121.727 kb on + strand, within MPMX19_03874at 121.727 kb on + strand, within MPMX19_03874at 121.728 kb on - strand, within MPMX19_03874at 121.803 kb on + strand, within MPMX19_03874at 121.970 kb on - strandat 122.055 kb on + strandat 122.180 kb on - strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.524 kb on + strand, within MPMX19_03875at 122.525 kb on - strand, within MPMX19_03875at 122.525 kb on - strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.859 kb on + strand, within MPMX19_03875at 122.859 kb on + strand, within MPMX19_03875at 122.860 kb on - strand, within MPMX19_03875at 123.057 kb on + strand, within MPMX19_03875at 123.058 kb on - strand, within MPMX19_03875at 123.170 kb on - strandat 123.170 kb on - strandat 123.170 kb on - strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.298 kb on + strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.299 kb on - strandat 123.335 kb on - strandat 123.338 kb on + strandat 123.338 kb on + strandat 123.389 kb on + strandat 123.389 kb on + strandat 123.389 kb on + strandat 123.389 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.409 kb on + strandat 123.410 kb on - strandat 123.410 kb on - strandat 123.410 kb on - strandat 123.410 kb on - strandat 123.410 kb on - strandat 123.466 kb on + strandat 123.793 kb on + strand, within MPMX19_03876at 123.793 kb on + strand, within MPMX19_03876at 123.794 kb on - strand, within MPMX19_03876at 123.925 kb on + strand, within MPMX19_03876at 123.925 kb on + strand, within MPMX19_03876at 123.925 kb on + strand, within MPMX19_03876at 123.925 kb on + strand, within MPMX19_03876at 123.926 kb on - strand, within MPMX19_03876at 123.926 kb on - strand, within MPMX19_03876at 124.033 kb on + strand, within MPMX19_03876at 124.033 kb on + strand, within MPMX19_03876at 124.034 kb on - strand, within MPMX19_03876at 124.034 kb on - strand, within MPMX19_03876at 124.034 kb on - strand, within MPMX19_03876at 124.072 kb on + strand, within MPMX19_03876at 124.073 kb on - strand, within MPMX19_03876at 124.073 kb on - strand, within MPMX19_03876at 124.105 kb on + strand, within MPMX19_03876at 124.105 kb on + strand, within MPMX19_03876at 124.105 kb on + strand, within MPMX19_03876at 124.105 kb on + strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.106 kb on - strand, within MPMX19_03876at 124.168 kb on + strand, within MPMX19_03876at 124.168 kb on + strand, within MPMX19_03876at 124.168 kb on + strand, within MPMX19_03876at 124.168 kb on + strand, within MPMX19_03876at 124.169 kb on - strand, within MPMX19_03876

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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121,072 - MPMX19_03873 0.74 +0.6
121,072 - MPMX19_03873 0.74 -1.1
121,072 - MPMX19_03873 0.74 +0.3
121,072 - MPMX19_03873 0.74 +0.4
121,072 - MPMX19_03873 0.74 -0.1
121,565 + MPMX19_03874 0.27 +1.2
121,565 + MPMX19_03874 0.27 +0.6
121,565 + MPMX19_03874 0.27 -1.4
121,566 - MPMX19_03874 0.28 -1.2
121,577 + MPMX19_03874 0.30 -1.2
121,577 + MPMX19_03874 0.30 -1.2
121,577 + MPMX19_03874 0.30 +0.4
121,577 + MPMX19_03874 0.30 +0.3
121,578 - MPMX19_03874 0.30 -1.4
121,578 - MPMX19_03874 0.30 +0.1
121,727 + MPMX19_03874 0.63 -0.7
121,727 + MPMX19_03874 0.63 +0.4
121,727 + MPMX19_03874 0.63 +0.2
121,728 - MPMX19_03874 0.63 -1.2
121,803 + MPMX19_03874 0.80 -0.2
121,970 - +0.0
122,055 + +0.9
122,180 - -1.4
122,181 + +1.3
122,181 + +1.2
122,181 + +0.1
122,181 + +0.5
122,181 + -0.5
122,181 + +0.6
122,181 + +0.1
122,181 + +0.4
122,182 - -0.1
122,182 - -1.3
122,182 - +0.1
122,182 - -1.2
122,182 - +0.0
122,182 - +0.6
122,182 - +0.8
122,182 - +0.2
122,182 - -0.4
122,182 - -2.3
122,182 - +2.4
122,182 - +0.6
122,182 - -1.7
122,524 + MPMX19_03875 0.39 +0.9
122,525 - MPMX19_03875 0.39 -1.2
122,525 - MPMX19_03875 0.39 -0.1
122,587 + MPMX19_03875 0.44 -1.2
122,587 + MPMX19_03875 0.44 -0.6
122,587 + MPMX19_03875 0.44 -0.7
122,587 + MPMX19_03875 0.44 -0.2
122,587 + MPMX19_03875 0.44 +0.2
122,588 - MPMX19_03875 0.44 -0.2
122,588 - MPMX19_03875 0.44 -0.4
122,588 - MPMX19_03875 0.44 -2.1
122,588 - MPMX19_03875 0.44 +0.0
122,588 - MPMX19_03875 0.44 +0.3
122,588 - MPMX19_03875 0.44 -0.8
122,588 - MPMX19_03875 0.44 -1.4
122,588 - MPMX19_03875 0.44 -0.2
122,833 - MPMX19_03875 0.65 +0.2
122,833 - MPMX19_03875 0.65 -0.7
122,833 - MPMX19_03875 0.65 +1.6
122,833 - MPMX19_03875 0.65 +0.7
122,833 - MPMX19_03875 0.65 -0.3
122,833 - MPMX19_03875 0.65 +0.9
122,833 - MPMX19_03875 0.65 +1.1
122,859 + MPMX19_03875 0.67 -0.4
122,859 + MPMX19_03875 0.67 -1.9
122,860 - MPMX19_03875 0.68 +0.6
123,057 + MPMX19_03875 0.84 -1.9
123,058 - MPMX19_03875 0.84 -0.1
123,170 - +0.6
123,170 - +0.4
123,170 - -1.1
123,298 + +1.2
123,298 + -0.7
123,298 + +0.3
123,298 + +0.6
123,298 + -1.4
123,298 + -1.5
123,298 + +0.3
123,298 + +0.3
123,298 + -0.4
123,298 + -0.4
123,298 + -0.2
123,298 + +0.3
123,298 + -0.5
123,298 + -1.0
123,298 + -0.8
123,299 - -0.7
123,299 - -0.7
123,299 - +0.1
123,299 - +0.2
123,299 - +0.8
123,299 - -0.1
123,299 - -0.0
123,299 - -0.3
123,299 - +1.3
123,335 - -1.3
123,338 + +0.1
123,338 + -0.2
123,389 + -0.7
123,389 + +1.9
123,389 + -1.2
123,389 + -0.4
123,409 + -0.2
123,409 + +1.4
123,409 + +0.3
123,409 + -0.9
123,409 + -1.4
123,409 + -0.9
123,409 + +0.4
123,409 + -1.4
123,409 + -0.5
123,409 + -0.5
123,410 - +0.5
123,410 - -0.5
123,410 - +0.4
123,410 - +0.1
123,410 - -0.1
123,466 + +0.5
123,793 + MPMX19_03876 0.11 +1.2
123,793 + MPMX19_03876 0.11 +0.0
123,794 - MPMX19_03876 0.11 +0.3
123,925 + MPMX19_03876 0.14 -0.5
123,925 + MPMX19_03876 0.14 -1.1
123,925 + MPMX19_03876 0.14 -0.8
123,925 + MPMX19_03876 0.14 -1.0
123,926 - MPMX19_03876 0.14 +0.4
123,926 - MPMX19_03876 0.14 -0.2
124,033 + MPMX19_03876 0.17 +0.3
124,033 + MPMX19_03876 0.17 +3.1
124,034 - MPMX19_03876 0.17 -0.4
124,034 - MPMX19_03876 0.17 -0.2
124,034 - MPMX19_03876 0.17 +0.6
124,072 + MPMX19_03876 0.18 -0.2
124,073 - MPMX19_03876 0.18 -2.1
124,073 - MPMX19_03876 0.18 -1.8
124,105 + MPMX19_03876 0.19 +0.4
124,105 + MPMX19_03876 0.19 +0.3
124,105 + MPMX19_03876 0.19 +0.6
124,105 + MPMX19_03876 0.19 -0.9
124,106 - MPMX19_03876 0.19 +1.2
124,106 - MPMX19_03876 0.19 -1.6
124,106 - MPMX19_03876 0.19 +0.4
124,106 - MPMX19_03876 0.19 -0.2
124,106 - MPMX19_03876 0.19 +0.1
124,106 - MPMX19_03876 0.19 -0.0
124,106 - MPMX19_03876 0.19 +1.4
124,106 - MPMX19_03876 0.19 -2.2
124,168 + MPMX19_03876 0.21 -0.7
124,168 + MPMX19_03876 0.21 -3.0
124,168 + MPMX19_03876 0.21 -0.4
124,168 + MPMX19_03876 0.21 +1.9
124,169 - MPMX19_03876 0.21 +0.1

Or see this region's nucleotide sequence