Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03871

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03869 and MPMX19_03870 are separated by 79 nucleotidesMPMX19_03870 and MPMX19_03871 are separated by 44 nucleotidesMPMX19_03871 and MPMX19_03872 are separated by 20 nucleotidesMPMX19_03872 and MPMX19_03873 are separated by 110 nucleotides MPMX19_03869: MPMX19_03869 - hypothetical protein, at 116,600 to 117,493 _03869 MPMX19_03870: MPMX19_03870 - L-aspartate dehydrogenase, at 117,573 to 118,430 _03870 MPMX19_03871: MPMX19_03871 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 118,475 to 119,275 _03871 MPMX19_03872: MPMX19_03872 - hypothetical protein, at 119,296 to 119,994 _03872 MPMX19_03873: MPMX19_03873 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 120,105 to 121,412 _03873 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 118.089 kb on + strand, within MPMX19_03870at 118.089 kb on + strand, within MPMX19_03870at 118.090 kb on - strand, within MPMX19_03870at 118.090 kb on - strand, within MPMX19_03870at 118.090 kb on - strand, within MPMX19_03870at 118.389 kb on + strandat 118.389 kb on + strandat 118.389 kb on + strandat 118.389 kb on + strandat 118.390 kb on - strandat 118.390 kb on - strandat 118.756 kb on + strand, within MPMX19_03871at 118.757 kb on - strand, within MPMX19_03871at 119.180 kb on + strand, within MPMX19_03871at 119.180 kb on + strand, within MPMX19_03871at 119.181 kb on - strand, within MPMX19_03871at 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.443 kb on + strand, within MPMX19_03872at 119.479 kb on + strand, within MPMX19_03872at 119.479 kb on + strand, within MPMX19_03872at 119.479 kb on + strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.507 kb on - strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.603 kb on - strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.980 kb on + strandat 119.981 kb on - strandat 119.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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118,089 + MPMX19_03870 0.60 +0.5
118,089 + MPMX19_03870 0.60 -0.4
118,090 - MPMX19_03870 0.60 -1.4
118,090 - MPMX19_03870 0.60 -0.7
118,090 - MPMX19_03870 0.60 +1.1
118,389 + -1.1
118,389 + -0.4
118,389 + -0.4
118,389 + -0.4
118,390 - -1.4
118,390 - +0.2
118,756 + MPMX19_03871 0.35 -0.4
118,757 - MPMX19_03871 0.35 -2.6
119,180 + MPMX19_03871 0.88 -1.4
119,180 + MPMX19_03871 0.88 -0.9
119,181 - MPMX19_03871 0.88 +0.3
119,222 + +0.6
119,222 + +0.1
119,222 + +0.4
119,222 + +0.6
119,222 + -0.4
119,223 - -0.1
119,223 - -0.1
119,223 - +0.4
119,223 - -0.4
119,223 - -1.4
119,223 - +0.2
119,223 - +0.9
119,223 - -2.4
119,223 - -1.4
119,223 - -0.9
119,223 - -1.2
119,258 + -1.2
119,258 + +0.5
119,258 + +0.3
119,258 + +1.0
119,258 + -1.1
119,258 + +0.8
119,259 - +0.8
119,259 - -0.2
119,259 - -0.5
119,259 - +0.6
119,259 - +1.2
119,259 - +0.9
119,259 - -0.9
119,259 - -0.7
119,259 - -1.5
119,259 - +0.2
119,443 + MPMX19_03872 0.21 -0.4
119,479 + MPMX19_03872 0.26 -0.5
119,479 + MPMX19_03872 0.26 -0.4
119,479 + MPMX19_03872 0.26 +1.2
119,480 - MPMX19_03872 0.26 -1.8
119,480 - MPMX19_03872 0.26 +0.6
119,480 - MPMX19_03872 0.26 -0.9
119,480 - MPMX19_03872 0.26 +0.8
119,480 - MPMX19_03872 0.26 -2.5
119,480 - MPMX19_03872 0.26 +0.5
119,507 - MPMX19_03872 0.30 -1.4
119,602 + MPMX19_03872 0.44 -0.7
119,602 + MPMX19_03872 0.44 -0.6
119,602 + MPMX19_03872 0.44 -1.0
119,602 + MPMX19_03872 0.44 -0.6
119,603 - MPMX19_03872 0.44 -1.6
119,713 + MPMX19_03872 0.60 +0.5
119,713 + MPMX19_03872 0.60 +0.1
119,713 + MPMX19_03872 0.60 -1.1
119,713 + MPMX19_03872 0.60 -1.5
119,713 + MPMX19_03872 0.60 +0.3
119,714 - MPMX19_03872 0.60 -1.4
119,714 - MPMX19_03872 0.60 -1.0
119,714 - MPMX19_03872 0.60 +0.2
119,714 - MPMX19_03872 0.60 +0.2
119,714 - MPMX19_03872 0.60 -0.5
119,980 + +1.3
119,981 - -0.2
119,981 - +0.3

Or see this region's nucleotide sequence