Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03849 and MPMX19_03850 are separated by 496 nucleotides MPMX19_03850 and MPMX19_03851 are separated by 181 nucleotides
MPMX19_03849: MPMX19_03849 - 1,4-alpha-glucan branching enzyme GlgB, at 88,990 to 91,290
_03849
MPMX19_03850: MPMX19_03850 - Glycogen operon protein GlgX, at 91,787 to 93,925
_03850
MPMX19_03851: MPMX19_03851 - hypothetical protein, at 94,107 to 95,192
_03851
Position (kb) 91
92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 91.288 kb on + strand at 91.288 kb on + strand at 91.288 kb on + strand at 91.288 kb on + strand at 91.288 kb on + strand at 91.288 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.364 kb on + strand at 91.365 kb on - strand at 91.365 kb on - strand at 91.512 kb on + strand at 91.512 kb on + strand at 91.512 kb on + strand at 91.513 kb on - strand at 91.757 kb on + strand at 91.757 kb on + strand at 91.757 kb on + strand at 91.757 kb on + strand at 91.757 kb on + strand at 91.758 kb on - strand at 91.758 kb on - strand at 91.758 kb on - strand at 91.758 kb on - strand at 91.758 kb on - strand at 91.758 kb on - strand at 91.758 kb on - strand at 91.988 kb on + strand at 91.988 kb on + strand at 91.989 kb on - strand at 91.989 kb on - strand at 91.989 kb on - strand at 91.989 kb on - strand at 91.989 kb on - strand at 91.989 kb on - strand at 92.018 kb on + strand, within MPMX19_03850 at 92.018 kb on + strand, within MPMX19_03850 at 92.018 kb on + strand, within MPMX19_03850 at 92.019 kb on - strand, within MPMX19_03850 at 92.042 kb on + strand, within MPMX19_03850 at 92.042 kb on + strand, within MPMX19_03850 at 92.043 kb on - strand, within MPMX19_03850 at 92.043 kb on - strand, within MPMX19_03850 at 92.096 kb on + strand, within MPMX19_03850 at 92.175 kb on + strand, within MPMX19_03850 at 92.175 kb on + strand, within MPMX19_03850 at 92.176 kb on - strand, within MPMX19_03850 at 92.176 kb on - strand, within MPMX19_03850 at 92.176 kb on - strand, within MPMX19_03850 at 92.176 kb on - strand, within MPMX19_03850 at 92.176 kb on - strand, within MPMX19_03850 at 92.176 kb on - strand, within MPMX19_03850 at 92.291 kb on + strand, within MPMX19_03850 at 92.291 kb on + strand, within MPMX19_03850 at 92.291 kb on + strand, within MPMX19_03850 at 92.291 kb on + strand, within MPMX19_03850 at 92.292 kb on - strand, within MPMX19_03850 at 92.292 kb on - strand, within MPMX19_03850 at 92.292 kb on - strand, within MPMX19_03850 at 92.292 kb on - strand, within MPMX19_03850 at 92.292 kb on - strand, within MPMX19_03850 at 92.390 kb on + strand, within MPMX19_03850 at 92.391 kb on - strand, within MPMX19_03850 at 92.391 kb on - strand, within MPMX19_03850 at 92.391 kb on - strand, within MPMX19_03850 at 92.391 kb on - strand, within MPMX19_03850 at 92.391 kb on - strand, within MPMX19_03850 at 92.483 kb on + strand, within MPMX19_03850 at 92.483 kb on + strand, within MPMX19_03850 at 92.483 kb on + strand, within MPMX19_03850 at 92.483 kb on + strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.484 kb on - strand, within MPMX19_03850 at 92.492 kb on + strand, within MPMX19_03850 at 92.492 kb on + strand, within MPMX19_03850 at 92.492 kb on + strand, within MPMX19_03850 at 92.493 kb on - strand, within MPMX19_03850 at 92.493 kb on - strand, within MPMX19_03850 at 92.493 kb on - strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.528 kb on + strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.529 kb on - strand, within MPMX19_03850 at 92.615 kb on + strand, within MPMX19_03850 at 92.616 kb on - strand, within MPMX19_03850 at 92.616 kb on - strand, within MPMX19_03850 at 92.616 kb on - strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.684 kb on + strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.685 kb on - strand, within MPMX19_03850 at 92.714 kb on + strand, within MPMX19_03850 at 92.715 kb on - strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.717 kb on + strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.718 kb on - strand, within MPMX19_03850 at 92.799 kb on - strand, within MPMX19_03850 at 92.868 kb on - strand, within MPMX19_03850 at 92.873 kb on + strand, within MPMX19_03850 at 92.972 kb on + strand, within MPMX19_03850 at 93.041 kb on + strand, within MPMX19_03850 at 93.042 kb on - strand, within MPMX19_03850 at 93.191 kb on + strand, within MPMX19_03850 at 93.191 kb on + strand, within MPMX19_03850 at 93.192 kb on - strand, within MPMX19_03850 at 93.192 kb on - strand, within MPMX19_03850 at 93.419 kb on + strand, within MPMX19_03850 at 93.419 kb on + strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.420 kb on - strand, within MPMX19_03850 at 93.590 kb on + strand, within MPMX19_03850 at 93.591 kb on - strand, within MPMX19_03850 at 93.591 kb on - strand, within MPMX19_03850 at 93.591 kb on - strand, within MPMX19_03850 at 94.026 kb on + strand at 94.027 kb on - strand at 94.054 kb on + strand at 94.054 kb on + strand at 94.054 kb on + strand at 94.054 kb on + strand at 94.054 kb on + strand at 94.054 kb on + strand at 94.055 kb on - strand at 94.055 kb on - strand at 94.055 kb on - strand at 94.055 kb on - strand at 94.055 kb on - strand at 94.100 kb on + strand at 94.117 kb on - strand at 94.502 kb on + strand, within MPMX19_03851 at 94.502 kb on + strand, within MPMX19_03851 at 94.503 kb on - strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 91,288 + -0.1 91,288 + -0.4 91,288 + +0.1 91,288 + -0.7 91,288 + -1.2 91,288 + -2.1 91,364 + -1.1 91,364 + -0.2 91,364 + +1.1 91,364 + -1.0 91,364 + -0.4 91,364 + -0.5 91,364 + -0.5 91,364 + -0.9 91,364 + +0.8 91,365 - +0.3 91,365 - +0.1 91,512 + -0.5 91,512 + -1.7 91,512 + -0.2 91,513 - -0.9 91,757 + +0.9 91,757 + +0.7 91,757 + -0.5 91,757 + -0.8 91,757 + +0.1 91,758 - +0.1 91,758 - -2.1 91,758 - -0.5 91,758 - +0.1 91,758 - +0.1 91,758 - +0.3 91,758 - -0.5 91,988 + -1.4 91,988 + +0.1 91,989 - -1.9 91,989 - -0.1 91,989 - -1.0 91,989 - -0.9 91,989 - -0.4 91,989 - +1.3 92,018 + MPMX19_03850 0.11 -0.1 92,018 + MPMX19_03850 0.11 +0.1 92,018 + MPMX19_03850 0.11 +1.2 92,019 - MPMX19_03850 0.11 -0.3 92,042 + MPMX19_03850 0.12 -0.4 92,042 + MPMX19_03850 0.12 -0.6 92,043 - MPMX19_03850 0.12 -2.1 92,043 - MPMX19_03850 0.12 -0.4 92,096 + MPMX19_03850 0.14 -0.1 92,175 + MPMX19_03850 0.18 +1.0 92,175 + MPMX19_03850 0.18 -0.2 92,176 - MPMX19_03850 0.18 -0.2 92,176 - MPMX19_03850 0.18 +3.0 92,176 - MPMX19_03850 0.18 -0.8 92,176 - MPMX19_03850 0.18 -0.9 92,176 - MPMX19_03850 0.18 +0.5 92,176 - MPMX19_03850 0.18 +0.6 92,291 + MPMX19_03850 0.24 -0.7 92,291 + MPMX19_03850 0.24 -0.1 92,291 + MPMX19_03850 0.24 -0.4 92,291 + MPMX19_03850 0.24 +0.5 92,292 - MPMX19_03850 0.24 +0.6 92,292 - MPMX19_03850 0.24 +1.6 92,292 - MPMX19_03850 0.24 -0.9 92,292 - MPMX19_03850 0.24 -0.4 92,292 - MPMX19_03850 0.24 -1.2 92,390 + MPMX19_03850 0.28 -0.1 92,391 - MPMX19_03850 0.28 +1.3 92,391 - MPMX19_03850 0.28 +0.6 92,391 - MPMX19_03850 0.28 -1.8 92,391 - MPMX19_03850 0.28 -0.4 92,391 - MPMX19_03850 0.28 -1.5 92,483 + MPMX19_03850 0.33 -0.2 92,483 + MPMX19_03850 0.33 +0.1 92,483 + MPMX19_03850 0.33 +0.4 92,483 + MPMX19_03850 0.33 -0.1 92,484 - MPMX19_03850 0.33 +0.4 92,484 - MPMX19_03850 0.33 -0.7 92,484 - MPMX19_03850 0.33 -1.2 92,484 - MPMX19_03850 0.33 -2.2 92,484 - MPMX19_03850 0.33 +1.2 92,484 - MPMX19_03850 0.33 +0.3 92,484 - MPMX19_03850 0.33 -0.5 92,484 - MPMX19_03850 0.33 +0.3 92,492 + MPMX19_03850 0.33 +0.1 92,492 + MPMX19_03850 0.33 +1.3 92,492 + MPMX19_03850 0.33 +0.2 92,493 - MPMX19_03850 0.33 +0.8 92,493 - MPMX19_03850 0.33 -0.6 92,493 - MPMX19_03850 0.33 -1.5 92,528 + MPMX19_03850 0.35 -0.1 92,528 + MPMX19_03850 0.35 -0.4 92,528 + MPMX19_03850 0.35 +0.5 92,528 + MPMX19_03850 0.35 +0.8 92,528 + MPMX19_03850 0.35 -0.1 92,528 + MPMX19_03850 0.35 +0.2 92,528 + MPMX19_03850 0.35 -2.1 92,528 + MPMX19_03850 0.35 -0.4 92,528 + MPMX19_03850 0.35 +0.3 92,528 + MPMX19_03850 0.35 +1.3 92,528 + MPMX19_03850 0.35 +1.6 92,529 - MPMX19_03850 0.35 -0.4 92,529 - MPMX19_03850 0.35 +0.1 92,529 - MPMX19_03850 0.35 -0.9 92,529 - MPMX19_03850 0.35 +0.1 92,529 - MPMX19_03850 0.35 +0.6 92,529 - MPMX19_03850 0.35 -0.8 92,529 - MPMX19_03850 0.35 -1.4 92,529 - MPMX19_03850 0.35 +0.8 92,529 - MPMX19_03850 0.35 -0.2 92,529 - MPMX19_03850 0.35 -0.4 92,615 + MPMX19_03850 0.39 -1.8 92,616 - MPMX19_03850 0.39 +0.9 92,616 - MPMX19_03850 0.39 +0.9 92,616 - MPMX19_03850 0.39 +0.6 92,684 + MPMX19_03850 0.42 -0.7 92,684 + MPMX19_03850 0.42 -0.7 92,684 + MPMX19_03850 0.42 +0.3 92,684 + MPMX19_03850 0.42 -0.3 92,684 + MPMX19_03850 0.42 -0.3 92,684 + MPMX19_03850 0.42 +0.7 92,684 + MPMX19_03850 0.42 -0.5 92,684 + MPMX19_03850 0.42 +0.1 92,684 + MPMX19_03850 0.42 +0.6 92,684 + MPMX19_03850 0.42 -0.7 92,684 + MPMX19_03850 0.42 -1.7 92,684 + MPMX19_03850 0.42 -0.7 92,684 + MPMX19_03850 0.42 -0.8 92,684 + MPMX19_03850 0.42 -0.6 92,685 - MPMX19_03850 0.42 -0.9 92,685 - MPMX19_03850 0.42 +1.0 92,685 - MPMX19_03850 0.42 +0.1 92,685 - MPMX19_03850 0.42 -0.8 92,685 - MPMX19_03850 0.42 +1.1 92,685 - MPMX19_03850 0.42 +0.9 92,685 - MPMX19_03850 0.42 +0.4 92,685 - MPMX19_03850 0.42 +0.3 92,685 - MPMX19_03850 0.42 +1.0 92,685 - MPMX19_03850 0.42 -0.9 92,714 + MPMX19_03850 0.43 -0.4 92,715 - MPMX19_03850 0.43 -1.1 92,717 + MPMX19_03850 0.43 -0.1 92,717 + MPMX19_03850 0.43 -0.3 92,717 + MPMX19_03850 0.43 +0.2 92,717 + MPMX19_03850 0.43 +0.2 92,717 + MPMX19_03850 0.43 +0.3 92,717 + MPMX19_03850 0.43 +0.6 92,717 + MPMX19_03850 0.43 -0.2 92,717 + MPMX19_03850 0.43 -1.3 92,717 + MPMX19_03850 0.43 -0.3 92,717 + MPMX19_03850 0.43 +0.1 92,717 + MPMX19_03850 0.43 -0.5 92,717 + MPMX19_03850 0.43 -0.9 92,718 - MPMX19_03850 0.44 +0.1 92,718 - MPMX19_03850 0.44 -0.1 92,718 - MPMX19_03850 0.44 -1.1 92,718 - MPMX19_03850 0.44 -0.4 92,718 - MPMX19_03850 0.44 +0.1 92,718 - MPMX19_03850 0.44 +1.1 92,718 - MPMX19_03850 0.44 +0.4 92,718 - MPMX19_03850 0.44 -0.3 92,718 - MPMX19_03850 0.44 -2.4 92,718 - MPMX19_03850 0.44 +0.8 92,718 - MPMX19_03850 0.44 +0.2 92,718 - MPMX19_03850 0.44 +1.1 92,799 - MPMX19_03850 0.47 +1.1 92,868 - MPMX19_03850 0.51 +0.3 92,873 + MPMX19_03850 0.51 +1.2 92,972 + MPMX19_03850 0.55 -0.4 93,041 + MPMX19_03850 0.59 +0.5 93,042 - MPMX19_03850 0.59 +0.6 93,191 + MPMX19_03850 0.66 +0.6 93,191 + MPMX19_03850 0.66 +1.2 93,192 - MPMX19_03850 0.66 -1.2 93,192 - MPMX19_03850 0.66 +0.2 93,419 + MPMX19_03850 0.76 +0.2 93,419 + MPMX19_03850 0.76 -1.3 93,420 - MPMX19_03850 0.76 +0.1 93,420 - MPMX19_03850 0.76 +0.1 93,420 - MPMX19_03850 0.76 +0.6 93,420 - MPMX19_03850 0.76 -0.2 93,420 - MPMX19_03850 0.76 -0.5 93,420 - MPMX19_03850 0.76 -0.5 93,420 - MPMX19_03850 0.76 +0.4 93,420 - MPMX19_03850 0.76 +0.9 93,420 - MPMX19_03850 0.76 -1.2 93,420 - MPMX19_03850 0.76 +1.0 93,590 + MPMX19_03850 0.84 +1.4 93,591 - MPMX19_03850 0.84 -1.1 93,591 - MPMX19_03850 0.84 -0.7 93,591 - MPMX19_03850 0.84 +1.0 94,026 + -0.4 94,027 - -0.9 94,054 + -0.1 94,054 + +2.2 94,054 + -0.8 94,054 + -0.7 94,054 + +0.6 94,054 + +0.3 94,055 - +0.1 94,055 - -1.4 94,055 - +1.0 94,055 - +0.1 94,055 - -0.4 94,100 + +1.1 94,117 - -0.6 94,502 + MPMX19_03851 0.36 -0.4 94,502 + MPMX19_03851 0.36 -0.5 94,503 - MPMX19_03851 0.36 -1.9 94,527 + MPMX19_03851 0.39 -1.6 94,527 + MPMX19_03851 0.39 -0.6 94,527 + MPMX19_03851 0.39 -2.4 94,527 + MPMX19_03851 0.39 -0.2 94,527 + MPMX19_03851 0.39 -1.2 94,527 + MPMX19_03851 0.39 -0.9 94,527 + MPMX19_03851 0.39 -0.5 94,527 + MPMX19_03851 0.39 -0.0 94,528 - MPMX19_03851 0.39 -0.5 94,528 - MPMX19_03851 0.39 +2.1 94,528 - MPMX19_03851 0.39 +0.3 94,528 - MPMX19_03851 0.39 -0.2 94,528 - MPMX19_03851 0.39 -0.8
Or see this region's nucleotide sequence