Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03795

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03794 and MPMX19_03795 are separated by 4 nucleotidesMPMX19_03795 and MPMX19_03796 are separated by 304 nucleotides MPMX19_03794: MPMX19_03794 - hypothetical protein, at 27,910 to 29,541 _03794 MPMX19_03795: MPMX19_03795 - hypothetical protein, at 29,546 to 31,087 _03795 MPMX19_03796: MPMX19_03796 - hypothetical protein, at 31,392 to 32,138 _03796 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.916 kb on - strand, within MPMX19_03794at 28.916 kb on - strand, within MPMX19_03794at 29.287 kb on + strand, within MPMX19_03794at 29.288 kb on - strand, within MPMX19_03794at 29.288 kb on - strand, within MPMX19_03794at 29.390 kb on - strandat 29.530 kb on + strandat 29.531 kb on - strandat 29.531 kb on - strandat 29.531 kb on - strandat 29.729 kb on + strand, within MPMX19_03795at 29.729 kb on + strand, within MPMX19_03795at 29.729 kb on + strand, within MPMX19_03795at 29.730 kb on - strand, within MPMX19_03795at 29.730 kb on - strand, within MPMX19_03795at 29.730 kb on - strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 30.383 kb on + strand, within MPMX19_03795at 30.384 kb on - strand, within MPMX19_03795at 30.401 kb on + strand, within MPMX19_03795at 30.401 kb on + strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 31.217 kb on + strandat 31.217 kb on + strandat 31.218 kb on - strandat 31.218 kb on - strandat 31.218 kb on - strandat 31.224 kb on + strandat 31.224 kb on + strandat 31.446 kb on + strandat 31.446 kb on + strandat 31.447 kb on - strandat 31.447 kb on - strandat 31.452 kb on + strandat 31.452 kb on + strandat 31.453 kb on - strandat 31.453 kb on - strandat 31.557 kb on + strand, within MPMX19_03796at 31.557 kb on + strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.558 kb on - strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.584 kb on + strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.585 kb on - strand, within MPMX19_03796at 31.602 kb on + strand, within MPMX19_03796at 31.602 kb on + strand, within MPMX19_03796at 31.602 kb on + strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.603 kb on - strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.767 kb on + strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.768 kb on - strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.779 kb on + strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.780 kb on - strand, within MPMX19_03796at 31.857 kb on + strand, within MPMX19_03796at 31.857 kb on + strand, within MPMX19_03796at 31.858 kb on - strand, within MPMX19_03796at 31.858 kb on - strand, within MPMX19_03796at 31.858 kb on - strand, within MPMX19_03796at 31.878 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.905 kb on + strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.906 kb on - strand, within MPMX19_03796at 31.926 kb on + strand, within MPMX19_03796at 31.926 kb on + strand, within MPMX19_03796at 31.926 kb on + strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 31.927 kb on - strand, within MPMX19_03796at 32.031 kb on + strand, within MPMX19_03796at 32.031 kb on + strand, within MPMX19_03796at 32.032 kb on - strand, within MPMX19_03796

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
28,624 + MPMX19_03794 0.44 -0.9
28,624 + MPMX19_03794 0.44 -0.6
28,624 + MPMX19_03794 0.44 +0.2
28,624 + MPMX19_03794 0.44 +0.1
28,624 + MPMX19_03794 0.44 -1.6
28,624 + MPMX19_03794 0.44 +0.8
28,624 + MPMX19_03794 0.44 -0.7
28,624 + MPMX19_03794 0.44 -0.7
28,624 + MPMX19_03794 0.44 +0.3
28,624 + MPMX19_03794 0.44 +0.3
28,624 + MPMX19_03794 0.44 +0.5
28,624 + MPMX19_03794 0.44 -0.4
28,624 + MPMX19_03794 0.44 +0.4
28,624 + MPMX19_03794 0.44 -1.8
28,625 - MPMX19_03794 0.44 +1.6
28,625 - MPMX19_03794 0.44 +0.2
28,625 - MPMX19_03794 0.44 +0.3
28,625 - MPMX19_03794 0.44 -1.1
28,625 - MPMX19_03794 0.44 -1.8
28,625 - MPMX19_03794 0.44 -1.7
28,625 - MPMX19_03794 0.44 +0.1
28,625 - MPMX19_03794 0.44 +1.1
28,625 - MPMX19_03794 0.44 -1.4
28,625 - MPMX19_03794 0.44 -0.8
28,625 - MPMX19_03794 0.44 -0.7
28,625 - MPMX19_03794 0.44 +0.4
28,625 - MPMX19_03794 0.44 +1.1
28,916 - MPMX19_03794 0.62 -2.4
28,916 - MPMX19_03794 0.62 -0.4
29,287 + MPMX19_03794 0.84 -1.2
29,288 - MPMX19_03794 0.84 -0.0
29,288 - MPMX19_03794 0.84 +0.1
29,390 - -2.4
29,530 + -0.9
29,531 - -0.4
29,531 - -0.4
29,531 - -1.8
29,729 + MPMX19_03795 0.12 -0.5
29,729 + MPMX19_03795 0.12 -0.9
29,729 + MPMX19_03795 0.12 +0.5
29,730 - MPMX19_03795 0.12 -1.4
29,730 - MPMX19_03795 0.12 -0.8
29,730 - MPMX19_03795 0.12 -0.7
29,759 + MPMX19_03795 0.14 -0.8
29,759 + MPMX19_03795 0.14 -0.9
29,759 + MPMX19_03795 0.14 -1.3
29,759 + MPMX19_03795 0.14 +0.6
29,759 + MPMX19_03795 0.14 -1.3
29,759 + MPMX19_03795 0.14 -1.4
29,760 - MPMX19_03795 0.14 +0.4
29,760 - MPMX19_03795 0.14 -0.2
29,760 - MPMX19_03795 0.14 +0.1
29,760 - MPMX19_03795 0.14 +0.2
30,383 + MPMX19_03795 0.54 -0.4
30,384 - MPMX19_03795 0.54 -1.5
30,401 + MPMX19_03795 0.55 +0.4
30,401 + MPMX19_03795 0.55 -1.4
30,402 - MPMX19_03795 0.56 -0.3
30,402 - MPMX19_03795 0.56 -0.7
30,402 - MPMX19_03795 0.56 -0.4
30,402 - MPMX19_03795 0.56 -1.6
30,402 - MPMX19_03795 0.56 +0.6
30,402 - MPMX19_03795 0.56 -0.4
30,402 - MPMX19_03795 0.56 +0.8
30,402 - MPMX19_03795 0.56 -1.2
30,402 - MPMX19_03795 0.56 +0.8
31,217 + -1.4
31,217 + +1.0
31,218 - -0.0
31,218 - +0.3
31,218 - +0.2
31,224 + -2.2
31,224 + -0.6
31,446 + -0.3
31,446 + -1.7
31,447 - -0.1
31,447 - +0.1
31,452 + +1.1
31,452 + +1.6
31,453 - -0.6
31,453 - -0.6
31,557 + MPMX19_03796 0.22 -0.2
31,557 + MPMX19_03796 0.22 -0.5
31,558 - MPMX19_03796 0.22 -2.2
31,558 - MPMX19_03796 0.22 +1.6
31,558 - MPMX19_03796 0.22 +0.4
31,558 - MPMX19_03796 0.22 -0.9
31,558 - MPMX19_03796 0.22 -1.9
31,558 - MPMX19_03796 0.22 -0.0
31,558 - MPMX19_03796 0.22 +0.8
31,558 - MPMX19_03796 0.22 -1.5
31,584 + MPMX19_03796 0.26 -0.3
31,584 + MPMX19_03796 0.26 +0.8
31,584 + MPMX19_03796 0.26 +0.3
31,584 + MPMX19_03796 0.26 -0.1
31,584 + MPMX19_03796 0.26 -0.2
31,584 + MPMX19_03796 0.26 -0.4
31,584 + MPMX19_03796 0.26 -0.7
31,584 + MPMX19_03796 0.26 +0.4
31,585 - MPMX19_03796 0.26 +0.2
31,585 - MPMX19_03796 0.26 +0.1
31,585 - MPMX19_03796 0.26 -1.2
31,585 - MPMX19_03796 0.26 -1.0
31,585 - MPMX19_03796 0.26 -0.6
31,585 - MPMX19_03796 0.26 -0.4
31,602 + MPMX19_03796 0.28 -0.9
31,602 + MPMX19_03796 0.28 -0.3
31,602 + MPMX19_03796 0.28 -1.2
31,603 - MPMX19_03796 0.28 -0.9
31,603 - MPMX19_03796 0.28 -0.9
31,603 - MPMX19_03796 0.28 +0.7
31,603 - MPMX19_03796 0.28 -0.4
31,603 - MPMX19_03796 0.28 -0.4
31,603 - MPMX19_03796 0.28 -0.7
31,767 + MPMX19_03796 0.50 -0.2
31,767 + MPMX19_03796 0.50 -1.2
31,767 + MPMX19_03796 0.50 -0.6
31,767 + MPMX19_03796 0.50 -1.5
31,767 + MPMX19_03796 0.50 -1.4
31,767 + MPMX19_03796 0.50 -1.6
31,767 + MPMX19_03796 0.50 -0.8
31,767 + MPMX19_03796 0.50 +0.5
31,767 + MPMX19_03796 0.50 +0.3
31,767 + MPMX19_03796 0.50 +0.1
31,767 + MPMX19_03796 0.50 -1.4
31,767 + MPMX19_03796 0.50 -1.4
31,767 + MPMX19_03796 0.50 -0.9
31,767 + MPMX19_03796 0.50 -0.4
31,768 - MPMX19_03796 0.50 -0.8
31,768 - MPMX19_03796 0.50 -0.3
31,768 - MPMX19_03796 0.50 -0.4
31,768 - MPMX19_03796 0.50 -0.4
31,768 - MPMX19_03796 0.50 -1.1
31,768 - MPMX19_03796 0.50 -0.5
31,768 - MPMX19_03796 0.50 -0.3
31,768 - MPMX19_03796 0.50 -0.7
31,768 - MPMX19_03796 0.50 -2.8
31,768 - MPMX19_03796 0.50 -0.0
31,779 + MPMX19_03796 0.52 -0.3
31,779 + MPMX19_03796 0.52 -0.4
31,779 + MPMX19_03796 0.52 +0.1
31,779 + MPMX19_03796 0.52 -0.1
31,779 + MPMX19_03796 0.52 -0.9
31,779 + MPMX19_03796 0.52 +0.2
31,779 + MPMX19_03796 0.52 -2.1
31,779 + MPMX19_03796 0.52 -1.9
31,779 + MPMX19_03796 0.52 -0.5
31,780 - MPMX19_03796 0.52 -2.2
31,780 - MPMX19_03796 0.52 -0.1
31,780 - MPMX19_03796 0.52 -0.7
31,780 - MPMX19_03796 0.52 -0.8
31,780 - MPMX19_03796 0.52 -1.5
31,857 + MPMX19_03796 0.62 +0.2
31,857 + MPMX19_03796 0.62 -0.2
31,858 - MPMX19_03796 0.62 +0.1
31,858 - MPMX19_03796 0.62 -0.9
31,858 - MPMX19_03796 0.62 -1.9
31,878 + MPMX19_03796 0.65 -1.2
31,905 + MPMX19_03796 0.69 -1.0
31,905 + MPMX19_03796 0.69 -0.9
31,905 + MPMX19_03796 0.69 -0.1
31,905 + MPMX19_03796 0.69 -0.5
31,905 + MPMX19_03796 0.69 -1.0
31,905 + MPMX19_03796 0.69 +1.3
31,905 + MPMX19_03796 0.69 -0.7
31,906 - MPMX19_03796 0.69 -0.4
31,906 - MPMX19_03796 0.69 -0.9
31,906 - MPMX19_03796 0.69 +0.3
31,906 - MPMX19_03796 0.69 -0.4
31,906 - MPMX19_03796 0.69 +0.4
31,906 - MPMX19_03796 0.69 -1.4
31,906 - MPMX19_03796 0.69 -0.2
31,926 + MPMX19_03796 0.71 -1.2
31,926 + MPMX19_03796 0.71 -0.1
31,926 + MPMX19_03796 0.71 -0.4
31,927 - MPMX19_03796 0.72 -0.7
31,927 - MPMX19_03796 0.72 +1.1
31,927 - MPMX19_03796 0.72 -0.9
31,927 - MPMX19_03796 0.72 +0.5
32,031 + MPMX19_03796 0.86 -0.1
32,031 + MPMX19_03796 0.86 -1.2
32,032 - MPMX19_03796 0.86 -0.5

Or see this region's nucleotide sequence