Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03764 and MPMX19_03765 are separated by 114 nucleotides MPMX19_03765 and MPMX19_03766 are separated by 141 nucleotides MPMX19_03766 and MPMX19_03767 are separated by 258 nucleotides
MPMX19_03764: MPMX19_03764 - putative deoxycholate-binding periplasmic protein YgiS, at 3,395 to 4,918
_03764
MPMX19_03765: MPMX19_03765 - hypothetical protein, at 5,033 to 5,674
_03765
MPMX19_03766: MPMX19_03766 - Sensor histidine kinase RcsC, at 5,816 to 7,834
_03766
MPMX19_03767: MPMX19_03767 - Sensor histidine kinase RcsC, at 8,093 to 11,275
_03767
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.828 kb on - strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 5.017 kb on + strand at 5.018 kb on - strand at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.406 kb on + strand, within MPMX19_03765 at 5.430 kb on + strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.725 kb on - strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.760 kb on + strand at 5.760 kb on + strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.833 kb on + strand at 5.834 kb on - strand at 6.093 kb on + strand, within MPMX19_03766 at 6.093 kb on + strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.708 kb on + strand, within MPMX19_03766 at 6.708 kb on + strand, within MPMX19_03766 at 6.709 kb on - strand, within MPMX19_03766 at 6.709 kb on - strand, within MPMX19_03766 at 6.709 kb on - strand, within MPMX19_03766 at 6.831 kb on + strand, within MPMX19_03766 at 6.831 kb on + strand, within MPMX19_03766 at 6.831 kb on + strand, within MPMX19_03766 at 6.832 kb on - strand, within MPMX19_03766 at 6.832 kb on - strand, within MPMX19_03766 at 6.832 kb on - strand, within MPMX19_03766 at 7.886 kb on - strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.919 kb on - strand at 7.919 kb on - strand at 7.951 kb on - strand at 7.951 kb on - strand at 7.951 kb on - strand at 7.953 kb on + strand at 7.953 kb on + strand at 7.953 kb on + strand at 7.954 kb on - strand at 7.957 kb on - strand at 7.971 kb on + strand at 7.971 kb on + strand at 8.003 kb on + strand at 8.004 kb on - strand at 8.004 kb on - strand at 8.072 kb on + strand at 8.159 kb on + strand at 8.160 kb on - strand at 8.262 kb on - strand at 8.419 kb on + strand, within MPMX19_03767 at 8.420 kb on - strand, within MPMX19_03767
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 4,828 - -0.4 4,847 + +1.2 4,847 + -0.3 4,847 + -2.2 4,847 + -1.1 4,847 + +0.5 4,847 + -1.8 4,847 + -0.8 4,847 + +0.1 4,847 + -1.2 4,847 + -0.4 4,847 + -1.1 4,848 - +1.1 4,848 - -0.8 4,848 - -0.9 4,848 - -0.8 4,848 - +0.6 4,848 - -1.9 4,848 - +0.1 4,848 - -0.8 5,017 + -1.1 5,018 - -1.4 5,397 + MPMX19_03765 0.57 -1.7 5,397 + MPMX19_03765 0.57 -0.4 5,397 + MPMX19_03765 0.57 -0.9 5,397 + MPMX19_03765 0.57 -1.9 5,397 + MPMX19_03765 0.57 +1.3 5,397 + MPMX19_03765 0.57 -0.9 5,398 - MPMX19_03765 0.57 -1.5 5,398 - MPMX19_03765 0.57 +0.8 5,398 - MPMX19_03765 0.57 +0.4 5,406 + MPMX19_03765 0.58 -0.6 5,430 + MPMX19_03765 0.62 +0.2 5,431 - MPMX19_03765 0.62 -0.2 5,431 - MPMX19_03765 0.62 +0.5 5,607 + MPMX19_03765 0.89 -0.4 5,607 + MPMX19_03765 0.89 -0.3 5,607 + MPMX19_03765 0.89 +0.8 5,607 + MPMX19_03765 0.89 -1.3 5,608 - MPMX19_03765 0.90 -0.3 5,608 - MPMX19_03765 0.90 -1.4 5,725 - -0.0 5,755 + +0.3 5,755 + +0.9 5,755 + -0.5 5,755 + -2.1 5,755 + +0.6 5,755 + -0.9 5,755 + +1.8 5,756 - -0.7 5,756 - +1.1 5,756 - +0.2 5,756 - -0.9 5,756 - +2.1 5,756 - +0.3 5,756 - +0.2 5,756 - +1.0 5,756 - +0.6 5,756 - -1.5 5,756 - -1.2 5,760 + -0.5 5,760 + +0.1 5,761 - +1.5 5,761 - +0.6 5,761 - -1.6 5,769 - -1.6 5,769 - -1.2 5,769 - -0.7 5,769 - -0.8 5,791 - +0.1 5,791 - -0.1 5,791 - +1.4 5,833 + +0.1 5,834 - +1.1 6,093 + MPMX19_03766 0.14 +0.1 6,093 + MPMX19_03766 0.14 -1.7 6,094 - MPMX19_03766 0.14 -0.7 6,094 - MPMX19_03766 0.14 -0.9 6,094 - MPMX19_03766 0.14 -0.7 6,094 - MPMX19_03766 0.14 +0.6 6,094 - MPMX19_03766 0.14 -0.4 6,094 - MPMX19_03766 0.14 -0.0 6,708 + MPMX19_03766 0.44 -1.5 6,708 + MPMX19_03766 0.44 +1.2 6,709 - MPMX19_03766 0.44 -0.5 6,709 - MPMX19_03766 0.44 -0.8 6,709 - MPMX19_03766 0.44 -1.2 6,831 + MPMX19_03766 0.50 -0.5 6,831 + MPMX19_03766 0.50 -0.2 6,831 + MPMX19_03766 0.50 -0.1 6,832 - MPMX19_03766 0.50 -0.9 6,832 - MPMX19_03766 0.50 -1.2 6,832 - MPMX19_03766 0.50 -0.7 7,886 - +0.3 7,918 + -2.1 7,918 + +0.6 7,918 + -1.2 7,918 + +0.9 7,919 - +0.5 7,919 - -0.4 7,951 - -0.1 7,951 - -0.6 7,951 - -0.6 7,953 + -0.3 7,953 + -0.9 7,953 + -1.8 7,954 - -0.9 7,957 - -1.1 7,971 + +0.4 7,971 + -0.9 8,003 + +0.3 8,004 - -0.4 8,004 - -0.4 8,072 + -1.4 8,159 + +0.6 8,160 - -0.7 8,262 - +0.2 8,419 + MPMX19_03767 0.10 -0.1 8,420 - MPMX19_03767 0.10 +0.6
Or see this region's nucleotide sequence