Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03757

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03755 and MPMX19_03756 are separated by 113 nucleotidesMPMX19_03756 and MPMX19_03757 are separated by 201 nucleotidesMPMX19_03757 and MPMX19_03758 are separated by 14 nucleotides MPMX19_03755: MPMX19_03755 - Copper transport protein YcnJ, at 1,199,556 to 1,201,259 _03755 MPMX19_03756: MPMX19_03756 - hypothetical protein, at 1,201,373 to 1,201,672 _03756 MPMX19_03757: MPMX19_03757 - D-ribose pyranase, at 1,201,874 to 1,202,293 _03757 MPMX19_03758: MPMX19_03758 - Ribose import ATP-binding protein RbsA, at 1,202,308 to 1,203,804 _03758 Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -2 -1 0 1 2at 1201.007 kb on + strand, within MPMX19_03755at 1201.257 kb on + strandat 1201.258 kb on - strandat 1201.258 kb on - strandat 1201.258 kb on - strandat 1201.469 kb on + strand, within MPMX19_03756at 1201.469 kb on + strand, within MPMX19_03756at 1201.470 kb on - strand, within MPMX19_03756at 1201.470 kb on - strand, within MPMX19_03756at 1201.508 kb on + strand, within MPMX19_03756at 1201.508 kb on + strand, within MPMX19_03756at 1201.661 kb on + strandat 1201.661 kb on + strandat 1201.661 kb on + strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.708 kb on + strandat 1201.708 kb on + strandat 1201.708 kb on + strandat 1201.709 kb on - strandat 1201.709 kb on - strandat 1201.709 kb on - strandat 1201.755 kb on - strandat 1201.755 kb on - strandat 1201.755 kb on - strandat 1201.835 kb on + strandat 1201.836 kb on - strandat 1201.836 kb on - strandat 1201.836 kb on - strandat 1201.934 kb on - strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.274 kb on - strandat 1202.283 kb on + strandat 1202.283 kb on + strandat 1202.283 kb on + strandat 1202.284 kb on - strandat 1202.284 kb on - strandat 1202.284 kb on - strandat 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1203.059 kb on - strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,201,007 + MPMX19_03755 0.85 -0.5
1,201,257 + -1.3
1,201,258 - +1.0
1,201,258 - +0.5
1,201,258 - -0.5
1,201,469 + MPMX19_03756 0.32 +0.4
1,201,469 + MPMX19_03756 0.32 -1.8
1,201,470 - MPMX19_03756 0.32 +0.1
1,201,470 - MPMX19_03756 0.32 -0.5
1,201,508 + MPMX19_03756 0.45 -1.2
1,201,508 + MPMX19_03756 0.45 -1.0
1,201,661 + -1.6
1,201,661 + +0.3
1,201,661 + -1.9
1,201,662 - -0.9
1,201,662 - +0.1
1,201,662 - -0.8
1,201,662 - -2.2
1,201,662 - -0.0
1,201,708 + +0.4
1,201,708 + -1.1
1,201,708 + -2.3
1,201,709 - -0.8
1,201,709 - -1.0
1,201,709 - +1.2
1,201,755 - -1.3
1,201,755 - -0.8
1,201,755 - +0.8
1,201,835 + -0.5
1,201,836 - +0.5
1,201,836 - +2.0
1,201,836 - +0.8
1,201,934 - MPMX19_03757 0.14 +0.3
1,202,200 + MPMX19_03757 0.78 -0.8
1,202,200 + MPMX19_03757 0.78 -0.4
1,202,200 + MPMX19_03757 0.78 +2.1
1,202,200 + MPMX19_03757 0.78 -1.0
1,202,200 + MPMX19_03757 0.78 -1.4
1,202,201 - MPMX19_03757 0.78 +1.8
1,202,201 - MPMX19_03757 0.78 -0.5
1,202,201 - MPMX19_03757 0.78 +0.7
1,202,201 - MPMX19_03757 0.78 +1.3
1,202,274 - -0.3
1,202,283 + +0.2
1,202,283 + +0.4
1,202,283 + -0.7
1,202,284 - +0.2
1,202,284 - -1.5
1,202,284 - -0.2
1,202,908 + MPMX19_03758 0.40 -1.0
1,202,908 + MPMX19_03758 0.40 -0.2
1,202,908 + MPMX19_03758 0.40 -1.2
1,202,908 + MPMX19_03758 0.40 -0.4
1,202,908 + MPMX19_03758 0.40 +1.4
1,202,908 + MPMX19_03758 0.40 -0.1
1,202,908 + MPMX19_03758 0.40 -0.6
1,202,908 + MPMX19_03758 0.40 -0.8
1,202,908 + MPMX19_03758 0.40 -0.0
1,202,909 - MPMX19_03758 0.40 +1.0
1,202,909 - MPMX19_03758 0.40 +0.3
1,202,909 - MPMX19_03758 0.40 -1.0
1,202,909 - MPMX19_03758 0.40 -0.2
1,202,909 - MPMX19_03758 0.40 +1.0
1,202,909 - MPMX19_03758 0.40 -1.9
1,202,909 - MPMX19_03758 0.40 +0.2
1,202,909 - MPMX19_03758 0.40 +0.5
1,202,909 - MPMX19_03758 0.40 -0.2
1,202,909 - MPMX19_03758 0.40 -2.2
1,202,909 - MPMX19_03758 0.40 +0.5
1,202,909 - MPMX19_03758 0.40 +1.1
1,202,909 - MPMX19_03758 0.40 -1.3
1,203,059 - MPMX19_03758 0.50 +0.7
1,203,064 + MPMX19_03758 0.51 -0.5
1,203,064 + MPMX19_03758 0.51 -0.0
1,203,064 + MPMX19_03758 0.51 +1.2
1,203,064 + MPMX19_03758 0.51 +0.7
1,203,064 + MPMX19_03758 0.51 -0.3
1,203,064 + MPMX19_03758 0.51 -1.3
1,203,064 + MPMX19_03758 0.51 -0.0
1,203,064 + MPMX19_03758 0.51 +1.0
1,203,064 + MPMX19_03758 0.51 -0.1
1,203,065 - MPMX19_03758 0.51 -0.6
1,203,065 - MPMX19_03758 0.51 -0.2
1,203,065 - MPMX19_03758 0.51 -0.2
1,203,065 - MPMX19_03758 0.51 -0.7

Or see this region's nucleotide sequence