Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03755

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03753 and MPMX19_03754 are separated by 50 nucleotidesMPMX19_03754 and MPMX19_03755 are separated by 106 nucleotidesMPMX19_03755 and MPMX19_03756 are separated by 113 nucleotidesMPMX19_03756 and MPMX19_03757 are separated by 201 nucleotides MPMX19_03753: MPMX19_03753 - hypothetical protein, at 1,198,380 to 1,198,865 _03753 MPMX19_03754: MPMX19_03754 - hypothetical protein, at 1,198,916 to 1,199,449 _03754 MPMX19_03755: MPMX19_03755 - Copper transport protein YcnJ, at 1,199,556 to 1,201,259 _03755 MPMX19_03756: MPMX19_03756 - hypothetical protein, at 1,201,373 to 1,201,672 _03756 MPMX19_03757: MPMX19_03757 - D-ribose pyranase, at 1,201,874 to 1,202,293 _03757 Position (kb) 1199 1200 1201 1202Strain fitness (log2 ratio) -2 -1 0 1 2at 1198.871 kb on + strandat 1198.871 kb on + strandat 1198.871 kb on + strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1198.872 kb on - strandat 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.030 kb on + strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.031 kb on - strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.033 kb on + strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.034 kb on - strand, within MPMX19_03754at 1199.171 kb on + strand, within MPMX19_03754at 1199.172 kb on - strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.183 kb on + strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.184 kb on - strand, within MPMX19_03754at 1199.261 kb on + strand, within MPMX19_03754at 1199.262 kb on - strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.318 kb on + strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.319 kb on - strand, within MPMX19_03754at 1199.399 kb on + strandat 1199.529 kb on + strandat 1199.582 kb on + strandat 1199.583 kb on - strandat 1199.583 kb on - strandat 1199.583 kb on - strandat 1199.583 kb on - strandat 1199.781 kb on - strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.859 kb on + strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.860 kb on - strand, within MPMX19_03755at 1199.872 kb on - strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.021 kb on + strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.022 kb on - strand, within MPMX19_03755at 1200.639 kb on + strand, within MPMX19_03755at 1200.640 kb on - strand, within MPMX19_03755at 1200.650 kb on - strand, within MPMX19_03755at 1201.007 kb on + strand, within MPMX19_03755at 1201.257 kb on + strandat 1201.258 kb on - strandat 1201.258 kb on - strandat 1201.258 kb on - strandat 1201.469 kb on + strand, within MPMX19_03756at 1201.469 kb on + strand, within MPMX19_03756at 1201.470 kb on - strand, within MPMX19_03756at 1201.470 kb on - strand, within MPMX19_03756at 1201.508 kb on + strand, within MPMX19_03756at 1201.508 kb on + strand, within MPMX19_03756at 1201.661 kb on + strandat 1201.661 kb on + strandat 1201.661 kb on + strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.708 kb on + strandat 1201.708 kb on + strandat 1201.708 kb on + strandat 1201.709 kb on - strandat 1201.709 kb on - strandat 1201.709 kb on - strandat 1201.755 kb on - strandat 1201.755 kb on - strandat 1201.755 kb on - strandat 1201.835 kb on + strandat 1201.836 kb on - strandat 1201.836 kb on - strandat 1201.836 kb on - strandat 1201.934 kb on - strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,198,871 + -0.6
1,198,871 + -0.5
1,198,871 + +0.2
1,198,872 - -1.3
1,198,872 - +0.8
1,198,872 - +0.8
1,198,872 - -0.0
1,198,872 - -0.3
1,198,872 - -0.4
1,198,872 - -0.5
1,199,030 + MPMX19_03754 0.21 -0.4
1,199,030 + MPMX19_03754 0.21 +2.1
1,199,030 + MPMX19_03754 0.21 +0.3
1,199,030 + MPMX19_03754 0.21 -0.1
1,199,030 + MPMX19_03754 0.21 +0.5
1,199,030 + MPMX19_03754 0.21 +1.1
1,199,031 - MPMX19_03754 0.22 +1.1
1,199,031 - MPMX19_03754 0.22 -0.4
1,199,031 - MPMX19_03754 0.22 -2.4
1,199,031 - MPMX19_03754 0.22 -0.9
1,199,031 - MPMX19_03754 0.22 +0.1
1,199,031 - MPMX19_03754 0.22 -0.8
1,199,031 - MPMX19_03754 0.22 -0.4
1,199,031 - MPMX19_03754 0.22 -0.1
1,199,031 - MPMX19_03754 0.22 -1.0
1,199,033 + MPMX19_03754 0.22 -0.2
1,199,033 + MPMX19_03754 0.22 +1.0
1,199,033 + MPMX19_03754 0.22 -0.2
1,199,033 + MPMX19_03754 0.22 +0.2
1,199,033 + MPMX19_03754 0.22 -0.4
1,199,033 + MPMX19_03754 0.22 -1.6
1,199,033 + MPMX19_03754 0.22 +0.2
1,199,033 + MPMX19_03754 0.22 +0.1
1,199,033 + MPMX19_03754 0.22 +0.1
1,199,033 + MPMX19_03754 0.22 -2.2
1,199,033 + MPMX19_03754 0.22 -1.9
1,199,033 + MPMX19_03754 0.22 -1.3
1,199,034 - MPMX19_03754 0.22 +1.1
1,199,034 - MPMX19_03754 0.22 -1.1
1,199,034 - MPMX19_03754 0.22 -1.0
1,199,034 - MPMX19_03754 0.22 +0.6
1,199,034 - MPMX19_03754 0.22 -1.3
1,199,034 - MPMX19_03754 0.22 -0.5
1,199,034 - MPMX19_03754 0.22 +1.5
1,199,034 - MPMX19_03754 0.22 -0.3
1,199,034 - MPMX19_03754 0.22 -0.2
1,199,034 - MPMX19_03754 0.22 -0.3
1,199,034 - MPMX19_03754 0.22 -0.5
1,199,171 + MPMX19_03754 0.48 -0.5
1,199,172 - MPMX19_03754 0.48 +1.0
1,199,183 + MPMX19_03754 0.50 -1.8
1,199,183 + MPMX19_03754 0.50 +1.0
1,199,183 + MPMX19_03754 0.50 +0.9
1,199,183 + MPMX19_03754 0.50 -2.4
1,199,183 + MPMX19_03754 0.50 -0.8
1,199,183 + MPMX19_03754 0.50 -0.3
1,199,183 + MPMX19_03754 0.50 -0.0
1,199,183 + MPMX19_03754 0.50 -0.3
1,199,183 + MPMX19_03754 0.50 -0.1
1,199,183 + MPMX19_03754 0.50 +0.7
1,199,183 + MPMX19_03754 0.50 -0.5
1,199,184 - MPMX19_03754 0.50 +1.7
1,199,184 - MPMX19_03754 0.50 -1.3
1,199,184 - MPMX19_03754 0.50 +1.0
1,199,184 - MPMX19_03754 0.50 -0.3
1,199,184 - MPMX19_03754 0.50 -0.5
1,199,184 - MPMX19_03754 0.50 -1.0
1,199,184 - MPMX19_03754 0.50 -0.1
1,199,261 + MPMX19_03754 0.65 -0.0
1,199,262 - MPMX19_03754 0.65 -0.2
1,199,318 + MPMX19_03754 0.75 -2.0
1,199,318 + MPMX19_03754 0.75 +0.0
1,199,318 + MPMX19_03754 0.75 -0.8
1,199,318 + MPMX19_03754 0.75 -0.9
1,199,318 + MPMX19_03754 0.75 -0.3
1,199,318 + MPMX19_03754 0.75 +1.4
1,199,318 + MPMX19_03754 0.75 -1.2
1,199,318 + MPMX19_03754 0.75 -0.3
1,199,318 + MPMX19_03754 0.75 -0.3
1,199,318 + MPMX19_03754 0.75 -1.0
1,199,318 + MPMX19_03754 0.75 -0.7
1,199,318 + MPMX19_03754 0.75 -1.8
1,199,318 + MPMX19_03754 0.75 -0.7
1,199,318 + MPMX19_03754 0.75 -1.0
1,199,319 - MPMX19_03754 0.75 -0.8
1,199,319 - MPMX19_03754 0.75 -0.3
1,199,319 - MPMX19_03754 0.75 -1.5
1,199,319 - MPMX19_03754 0.75 +1.0
1,199,319 - MPMX19_03754 0.75 +0.2
1,199,319 - MPMX19_03754 0.75 +1.3
1,199,319 - MPMX19_03754 0.75 -0.5
1,199,319 - MPMX19_03754 0.75 -0.8
1,199,319 - MPMX19_03754 0.75 -0.0
1,199,319 - MPMX19_03754 0.75 +0.2
1,199,319 - MPMX19_03754 0.75 -0.4
1,199,319 - MPMX19_03754 0.75 -0.9
1,199,399 + +1.0
1,199,529 + -0.3
1,199,582 + +0.8
1,199,583 - -0.8
1,199,583 - -1.5
1,199,583 - -0.0
1,199,583 - -0.8
1,199,781 - MPMX19_03755 0.13 +0.5
1,199,859 + MPMX19_03755 0.18 -1.5
1,199,859 + MPMX19_03755 0.18 -0.8
1,199,859 + MPMX19_03755 0.18 -1.1
1,199,859 + MPMX19_03755 0.18 -0.2
1,199,859 + MPMX19_03755 0.18 -0.5
1,199,859 + MPMX19_03755 0.18 -0.5
1,199,859 + MPMX19_03755 0.18 -0.6
1,199,859 + MPMX19_03755 0.18 +0.4
1,199,859 + MPMX19_03755 0.18 +0.7
1,199,859 + MPMX19_03755 0.18 -1.8
1,199,859 + MPMX19_03755 0.18 -1.5
1,199,859 + MPMX19_03755 0.18 -1.9
1,199,859 + MPMX19_03755 0.18 +1.2
1,199,859 + MPMX19_03755 0.18 +0.5
1,199,859 + MPMX19_03755 0.18 -0.9
1,199,859 + MPMX19_03755 0.18 -0.1
1,199,859 + MPMX19_03755 0.18 +1.1
1,199,859 + MPMX19_03755 0.18 +0.1
1,199,860 - MPMX19_03755 0.18 -0.6
1,199,860 - MPMX19_03755 0.18 -1.3
1,199,860 - MPMX19_03755 0.18 -0.3
1,199,860 - MPMX19_03755 0.18 -1.9
1,199,860 - MPMX19_03755 0.18 +0.2
1,199,860 - MPMX19_03755 0.18 -0.5
1,199,860 - MPMX19_03755 0.18 -2.5
1,199,860 - MPMX19_03755 0.18 +0.0
1,199,860 - MPMX19_03755 0.18 -1.5
1,199,860 - MPMX19_03755 0.18 -2.5
1,199,860 - MPMX19_03755 0.18 +1.1
1,199,860 - MPMX19_03755 0.18 -0.2
1,199,860 - MPMX19_03755 0.18 -1.0
1,199,860 - MPMX19_03755 0.18 -0.8
1,199,860 - MPMX19_03755 0.18 +1.5
1,199,860 - MPMX19_03755 0.18 +0.4
1,199,860 - MPMX19_03755 0.18 +1.0
1,199,872 - MPMX19_03755 0.19 +0.3
1,200,021 + MPMX19_03755 0.27 -0.6
1,200,021 + MPMX19_03755 0.27 -0.3
1,200,021 + MPMX19_03755 0.27 +0.7
1,200,021 + MPMX19_03755 0.27 +1.6
1,200,021 + MPMX19_03755 0.27 -2.7
1,200,022 - MPMX19_03755 0.27 +1.4
1,200,022 - MPMX19_03755 0.27 +1.5
1,200,022 - MPMX19_03755 0.27 -0.8
1,200,022 - MPMX19_03755 0.27 -2.3
1,200,022 - MPMX19_03755 0.27 +0.5
1,200,022 - MPMX19_03755 0.27 +0.1
1,200,639 + MPMX19_03755 0.64 -1.4
1,200,640 - MPMX19_03755 0.64 -1.1
1,200,650 - MPMX19_03755 0.64 -1.6
1,201,007 + MPMX19_03755 0.85 -0.5
1,201,257 + -1.3
1,201,258 - +1.0
1,201,258 - +0.5
1,201,258 - -0.5
1,201,469 + MPMX19_03756 0.32 +0.4
1,201,469 + MPMX19_03756 0.32 -1.8
1,201,470 - MPMX19_03756 0.32 +0.1
1,201,470 - MPMX19_03756 0.32 -0.5
1,201,508 + MPMX19_03756 0.45 -1.2
1,201,508 + MPMX19_03756 0.45 -1.0
1,201,661 + -1.6
1,201,661 + +0.3
1,201,661 + -1.9
1,201,662 - -0.9
1,201,662 - +0.1
1,201,662 - -0.8
1,201,662 - -2.2
1,201,662 - -0.0
1,201,708 + +0.4
1,201,708 + -1.1
1,201,708 + -2.3
1,201,709 - -0.8
1,201,709 - -1.0
1,201,709 - +1.2
1,201,755 - -1.3
1,201,755 - -0.8
1,201,755 - +0.8
1,201,835 + -0.5
1,201,836 - +0.5
1,201,836 - +2.0
1,201,836 - +0.8
1,201,934 - MPMX19_03757 0.14 +0.3
1,202,200 + MPMX19_03757 0.78 -0.8
1,202,200 + MPMX19_03757 0.78 -0.4
1,202,200 + MPMX19_03757 0.78 +2.1
1,202,200 + MPMX19_03757 0.78 -1.0
1,202,200 + MPMX19_03757 0.78 -1.4
1,202,201 - MPMX19_03757 0.78 +1.8
1,202,201 - MPMX19_03757 0.78 -0.5
1,202,201 - MPMX19_03757 0.78 +0.7
1,202,201 - MPMX19_03757 0.78 +1.3

Or see this region's nucleotide sequence