Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03688

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03687 and MPMX19_03688 overlap by 4 nucleotidesMPMX19_03688 and MPMX19_03689 are separated by 6 nucleotidesMPMX19_03689 and MPMX19_03690 are separated by 69 nucleotides MPMX19_03687: MPMX19_03687 - hypothetical protein, at 1,127,706 to 1,129,040 _03687 MPMX19_03688: MPMX19_03688 - Response regulator UvrY, at 1,129,037 to 1,129,669 _03688 MPMX19_03689: MPMX19_03689 - Transcriptional regulator MntR, at 1,129,676 to 1,130,158 _03689 MPMX19_03690: MPMX19_03690 - Divalent metal cation transporter MntH, at 1,130,228 to 1,131,586 _03690 Position (kb) 1129 1130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.151 kb on - strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.205 kb on - strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.341 kb on - strand, within MPMX19_03688at 1129.341 kb on - strand, within MPMX19_03688at 1129.341 kb on - strand, within MPMX19_03688at 1129.884 kb on + strand, within MPMX19_03689at 1129.884 kb on + strand, within MPMX19_03689at 1129.884 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.151 kb on + strandat 1130.151 kb on + strandat 1130.152 kb on - strandat 1130.152 kb on - strandat 1130.153 kb on + strandat 1130.153 kb on + strandat 1130.153 kb on + strandat 1130.153 kb on + strandat 1130.154 kb on - strandat 1130.154 kb on - strandat 1130.154 kb on - strandat 1130.154 kb on - strandat 1130.154 kb on - strandat 1130.165 kb on + strandat 1130.166 kb on - strandat 1130.166 kb on - strandat 1130.180 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.184 kb on + strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.185 kb on - strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.273 kb on + strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.274 kb on - strandat 1130.387 kb on + strand, within MPMX19_03690at 1130.387 kb on + strand, within MPMX19_03690at 1130.387 kb on + strand, within MPMX19_03690at 1130.387 kb on + strand, within MPMX19_03690at 1130.388 kb on - strand, within MPMX19_03690at 1130.388 kb on - strand, within MPMX19_03690at 1130.388 kb on - strand, within MPMX19_03690at 1130.388 kb on - strand, within MPMX19_03690at 1130.388 kb on - strand, within MPMX19_03690at 1130.405 kb on + strand, within MPMX19_03690at 1130.405 kb on + strand, within MPMX19_03690at 1130.405 kb on + strand, within MPMX19_03690at 1130.405 kb on + strand, within MPMX19_03690at 1130.405 kb on + strand, within MPMX19_03690at 1130.406 kb on - strand, within MPMX19_03690at 1130.406 kb on - strand, within MPMX19_03690at 1130.406 kb on - strand, within MPMX19_03690at 1130.406 kb on - strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.407 kb on + strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.408 kb on - strand, within MPMX19_03690at 1130.459 kb on + strand, within MPMX19_03690at 1130.461 kb on + strand, within MPMX19_03690at 1130.461 kb on + strand, within MPMX19_03690at 1130.461 kb on + strand, within MPMX19_03690at 1130.461 kb on + strand, within MPMX19_03690at 1130.461 kb on + strand, within MPMX19_03690at 1130.461 kb on + strand, within MPMX19_03690at 1130.461 kb on + strand, within MPMX19_03690at 1130.462 kb on - strand, within MPMX19_03690at 1130.462 kb on - strand, within MPMX19_03690at 1130.462 kb on - strand, within MPMX19_03690at 1130.462 kb on - strand, within MPMX19_03690at 1130.462 kb on - strand, within MPMX19_03690

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,128,150 + MPMX19_03687 0.33 +0.3
1,128,150 + MPMX19_03687 0.33 -0.9
1,128,150 + MPMX19_03687 0.33 -1.6
1,128,150 + MPMX19_03687 0.33 +1.1
1,128,150 + MPMX19_03687 0.33 -2.0
1,128,150 + MPMX19_03687 0.33 -0.0
1,128,150 + MPMX19_03687 0.33 -0.2
1,128,151 - MPMX19_03687 0.33 +0.4
1,128,225 + MPMX19_03687 0.39 +0.9
1,128,225 + MPMX19_03687 0.39 -2.2
1,128,225 + MPMX19_03687 0.39 +0.5
1,128,225 + MPMX19_03687 0.39 -0.2
1,128,225 + MPMX19_03687 0.39 -0.6
1,128,226 - MPMX19_03687 0.39 -0.5
1,128,226 - MPMX19_03687 0.39 +0.1
1,128,226 - MPMX19_03687 0.39 -1.0
1,128,226 - MPMX19_03687 0.39 +0.8
1,129,204 + MPMX19_03688 0.26 +0.4
1,129,204 + MPMX19_03688 0.26 -0.5
1,129,204 + MPMX19_03688 0.26 +0.5
1,129,204 + MPMX19_03688 0.26 -2.0
1,129,204 + MPMX19_03688 0.26 -2.6
1,129,204 + MPMX19_03688 0.26 -0.0
1,129,204 + MPMX19_03688 0.26 -0.2
1,129,204 + MPMX19_03688 0.26 -0.0
1,129,205 - MPMX19_03688 0.27 -1.8
1,129,340 + MPMX19_03688 0.48 -1.6
1,129,340 + MPMX19_03688 0.48 -1.3
1,129,340 + MPMX19_03688 0.48 -1.0
1,129,340 + MPMX19_03688 0.48 -1.8
1,129,341 - MPMX19_03688 0.48 -0.8
1,129,341 - MPMX19_03688 0.48 -0.7
1,129,341 - MPMX19_03688 0.48 -0.2
1,129,884 + MPMX19_03689 0.43 +0.7
1,129,884 + MPMX19_03689 0.43 -0.2
1,129,884 + MPMX19_03689 0.43 -1.0
1,130,016 + MPMX19_03689 0.70 -0.2
1,130,016 + MPMX19_03689 0.70 -0.3
1,130,016 + MPMX19_03689 0.70 -0.1
1,130,016 + MPMX19_03689 0.70 +1.0
1,130,016 + MPMX19_03689 0.70 +0.7
1,130,016 + MPMX19_03689 0.70 -0.8
1,130,016 + MPMX19_03689 0.70 +1.0
1,130,016 + MPMX19_03689 0.70 +0.3
1,130,016 + MPMX19_03689 0.70 -1.1
1,130,016 + MPMX19_03689 0.70 +2.5
1,130,017 - MPMX19_03689 0.71 +0.2
1,130,017 - MPMX19_03689 0.71 +0.2
1,130,017 - MPMX19_03689 0.71 -0.7
1,130,017 - MPMX19_03689 0.71 +0.4
1,130,017 - MPMX19_03689 0.71 -0.3
1,130,017 - MPMX19_03689 0.71 -0.6
1,130,017 - MPMX19_03689 0.71 -0.7
1,130,017 - MPMX19_03689 0.71 +0.2
1,130,017 - MPMX19_03689 0.71 +0.1
1,130,017 - MPMX19_03689 0.71 -1.1
1,130,017 - MPMX19_03689 0.71 +0.4
1,130,017 - MPMX19_03689 0.71 -1.8
1,130,151 + -0.5
1,130,151 + -0.2
1,130,152 - -0.8
1,130,152 - -1.1
1,130,153 + -0.7
1,130,153 + -1.6
1,130,153 + -0.5
1,130,153 + -0.5
1,130,154 - -0.7
1,130,154 - +0.4
1,130,154 - -1.1
1,130,154 - -0.5
1,130,154 - -1.6
1,130,165 + -0.7
1,130,166 - +0.9
1,130,166 - -0.2
1,130,180 + -0.0
1,130,184 + +1.1
1,130,184 + -2.5
1,130,184 + +1.5
1,130,184 + -0.5
1,130,184 + -1.3
1,130,184 + +0.4
1,130,184 + -1.8
1,130,184 + +0.4
1,130,184 + +1.4
1,130,184 + -0.5
1,130,184 + +0.2
1,130,184 + -0.5
1,130,184 + -2.0
1,130,184 + -0.6
1,130,184 + -0.9
1,130,185 - +0.7
1,130,185 - -0.1
1,130,185 - -1.0
1,130,185 - -1.6
1,130,185 - -0.9
1,130,185 - -0.3
1,130,185 - -0.3
1,130,185 - -2.0
1,130,185 - -0.9
1,130,185 - -0.1
1,130,185 - -0.7
1,130,185 - -1.8
1,130,273 + -0.1
1,130,273 + -2.9
1,130,273 + +0.6
1,130,273 + +0.1
1,130,273 + +0.5
1,130,273 + -0.6
1,130,273 + -0.2
1,130,273 + -0.3
1,130,273 + -0.6
1,130,273 + -1.3
1,130,274 - -0.0
1,130,274 - +0.4
1,130,274 - +0.7
1,130,274 - -0.8
1,130,274 - +0.3
1,130,274 - +0.5
1,130,274 - -1.6
1,130,274 - -0.8
1,130,274 - -0.6
1,130,387 + MPMX19_03690 0.12 -0.8
1,130,387 + MPMX19_03690 0.12 -0.6
1,130,387 + MPMX19_03690 0.12 +0.1
1,130,387 + MPMX19_03690 0.12 -1.9
1,130,388 - MPMX19_03690 0.12 -0.3
1,130,388 - MPMX19_03690 0.12 -1.3
1,130,388 - MPMX19_03690 0.12 -0.3
1,130,388 - MPMX19_03690 0.12 -1.4
1,130,388 - MPMX19_03690 0.12 -0.2
1,130,405 + MPMX19_03690 0.13 -0.2
1,130,405 + MPMX19_03690 0.13 +0.7
1,130,405 + MPMX19_03690 0.13 +0.5
1,130,405 + MPMX19_03690 0.13 +0.4
1,130,405 + MPMX19_03690 0.13 -0.8
1,130,406 - MPMX19_03690 0.13 -0.6
1,130,406 - MPMX19_03690 0.13 -2.0
1,130,406 - MPMX19_03690 0.13 +0.2
1,130,406 - MPMX19_03690 0.13 +0.5
1,130,407 + MPMX19_03690 0.13 -0.2
1,130,407 + MPMX19_03690 0.13 +0.3
1,130,407 + MPMX19_03690 0.13 -0.9
1,130,407 + MPMX19_03690 0.13 +0.8
1,130,407 + MPMX19_03690 0.13 -0.7
1,130,407 + MPMX19_03690 0.13 -0.2
1,130,407 + MPMX19_03690 0.13 -0.6
1,130,407 + MPMX19_03690 0.13 -1.2
1,130,407 + MPMX19_03690 0.13 +1.4
1,130,407 + MPMX19_03690 0.13 -0.2
1,130,408 - MPMX19_03690 0.13 -1.0
1,130,408 - MPMX19_03690 0.13 -0.2
1,130,408 - MPMX19_03690 0.13 +0.8
1,130,408 - MPMX19_03690 0.13 -2.0
1,130,408 - MPMX19_03690 0.13 +1.4
1,130,408 - MPMX19_03690 0.13 -0.2
1,130,408 - MPMX19_03690 0.13 -0.0
1,130,408 - MPMX19_03690 0.13 +2.1
1,130,408 - MPMX19_03690 0.13 +0.6
1,130,408 - MPMX19_03690 0.13 -0.4
1,130,408 - MPMX19_03690 0.13 +0.5
1,130,408 - MPMX19_03690 0.13 -1.9
1,130,459 + MPMX19_03690 0.17 +2.1
1,130,461 + MPMX19_03690 0.17 +1.4
1,130,461 + MPMX19_03690 0.17 +0.5
1,130,461 + MPMX19_03690 0.17 +0.4
1,130,461 + MPMX19_03690 0.17 +1.0
1,130,461 + MPMX19_03690 0.17 -0.3
1,130,461 + MPMX19_03690 0.17 -0.5
1,130,461 + MPMX19_03690 0.17 -0.0
1,130,462 - MPMX19_03690 0.17 -1.8
1,130,462 - MPMX19_03690 0.17 +0.7
1,130,462 - MPMX19_03690 0.17 -1.9
1,130,462 - MPMX19_03690 0.17 +0.1
1,130,462 - MPMX19_03690 0.17 -0.6

Or see this region's nucleotide sequence