Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03677

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03675 and MPMX19_03676 are separated by 126 nucleotidesMPMX19_03676 and MPMX19_03677 are separated by 10 nucleotidesMPMX19_03677 and MPMX19_03678 are separated by 149 nucleotides MPMX19_03675: MPMX19_03675 - hypothetical protein, at 1,113,063 to 1,114,208 _03675 MPMX19_03676: MPMX19_03676 - hypothetical protein, at 1,114,335 to 1,114,766 _03676 MPMX19_03677: MPMX19_03677 - Hydroxycarboxylate dehydrogenase B, at 1,114,777 to 1,115,901 _03677 MPMX19_03678: MPMX19_03678 - Methyl-accepting chemotaxis protein, at 1,116,051 to 1,117,727 _03678 Position (kb) 1114 1115 1116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1113.851 kb on + strand, within MPMX19_03675at 1113.851 kb on + strand, within MPMX19_03675at 1113.851 kb on + strand, within MPMX19_03675at 1113.851 kb on + strand, within MPMX19_03675at 1113.851 kb on + strand, within MPMX19_03675at 1114.116 kb on + strandat 1114.116 kb on + strandat 1114.116 kb on + strandat 1114.116 kb on + strandat 1114.116 kb on + strandat 1114.116 kb on + strandat 1114.117 kb on - strandat 1114.117 kb on - strandat 1114.117 kb on - strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.122 kb on + strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.123 kb on - strandat 1114.254 kb on + strandat 1114.254 kb on + strandat 1114.254 kb on + strandat 1114.255 kb on - strandat 1114.392 kb on + strand, within MPMX19_03676at 1114.402 kb on + strand, within MPMX19_03676at 1114.402 kb on + strand, within MPMX19_03676at 1114.403 kb on - strand, within MPMX19_03676at 1114.533 kb on + strand, within MPMX19_03676at 1114.533 kb on + strand, within MPMX19_03676at 1114.533 kb on + strand, within MPMX19_03676at 1114.533 kb on + strand, within MPMX19_03676at 1114.534 kb on - strand, within MPMX19_03676at 1114.534 kb on - strand, within MPMX19_03676at 1114.534 kb on - strand, within MPMX19_03676at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.955 kb on + strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1114.956 kb on - strand, within MPMX19_03677at 1115.462 kb on + strand, within MPMX19_03677at 1115.462 kb on + strand, within MPMX19_03677at 1115.462 kb on + strand, within MPMX19_03677at 1115.463 kb on - strand, within MPMX19_03677at 1115.463 kb on - strand, within MPMX19_03677at 1115.463 kb on - strand, within MPMX19_03677at 1115.481 kb on + strand, within MPMX19_03677at 1115.481 kb on + strand, within MPMX19_03677at 1115.482 kb on - strand, within MPMX19_03677at 1115.576 kb on + strand, within MPMX19_03677at 1115.623 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.675 kb on + strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.676 kb on - strand, within MPMX19_03677at 1115.843 kb on + strandat 1115.843 kb on + strandat 1115.843 kb on + strandat 1115.844 kb on - strandat 1115.844 kb on - strandat 1115.844 kb on - strandat 1115.844 kb on - strandat 1115.844 kb on - strandat 1115.928 kb on + strandat 1115.928 kb on + strandat 1115.928 kb on + strandat 1115.928 kb on + strandat 1115.929 kb on - strandat 1115.929 kb on - strandat 1115.978 kb on + strandat 1115.978 kb on + strandat 1115.978 kb on + strandat 1115.978 kb on + strandat 1115.978 kb on + strandat 1115.978 kb on + strandat 1115.979 kb on - strandat 1115.979 kb on - strandat 1115.979 kb on - strandat 1115.979 kb on - strandat 1115.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,113,851 + MPMX19_03675 0.69 -0.7
1,113,851 + MPMX19_03675 0.69 -2.0
1,113,851 + MPMX19_03675 0.69 -1.0
1,113,851 + MPMX19_03675 0.69 -0.5
1,113,851 + MPMX19_03675 0.69 -0.2
1,114,116 + -0.8
1,114,116 + +0.6
1,114,116 + -1.6
1,114,116 + -1.9
1,114,116 + -1.5
1,114,116 + -0.0
1,114,117 - +0.2
1,114,117 - +0.2
1,114,117 - +0.1
1,114,122 + -0.7
1,114,122 + -0.0
1,114,122 + +2.0
1,114,122 + +0.3
1,114,122 + -0.2
1,114,122 + -0.0
1,114,122 + -0.0
1,114,122 + +0.7
1,114,122 + -0.2
1,114,122 + -0.9
1,114,122 + -1.0
1,114,122 + -0.1
1,114,122 + -1.6
1,114,122 + -1.2
1,114,123 - -0.6
1,114,123 - -0.0
1,114,123 - -0.8
1,114,123 - +0.1
1,114,123 - -0.4
1,114,123 - -1.0
1,114,123 - -0.4
1,114,123 - +0.5
1,114,123 - +0.4
1,114,123 - -0.3
1,114,254 + +0.0
1,114,254 + -0.2
1,114,254 + +0.1
1,114,255 - -0.5
1,114,392 + MPMX19_03676 0.13 +0.9
1,114,402 + MPMX19_03676 0.16 -1.9
1,114,402 + MPMX19_03676 0.16 -2.8
1,114,403 - MPMX19_03676 0.16 -0.5
1,114,533 + MPMX19_03676 0.46 -0.5
1,114,533 + MPMX19_03676 0.46 -1.6
1,114,533 + MPMX19_03676 0.46 +0.5
1,114,533 + MPMX19_03676 0.46 -1.6
1,114,534 - MPMX19_03676 0.46 -1.8
1,114,534 - MPMX19_03676 0.46 -0.8
1,114,534 - MPMX19_03676 0.46 -1.4
1,114,955 + MPMX19_03677 0.16 -2.5
1,114,955 + MPMX19_03677 0.16 -0.5
1,114,955 + MPMX19_03677 0.16 -2.8
1,114,955 + MPMX19_03677 0.16 -0.3
1,114,955 + MPMX19_03677 0.16 +2.4
1,114,955 + MPMX19_03677 0.16 -2.5
1,114,955 + MPMX19_03677 0.16 -0.7
1,114,955 + MPMX19_03677 0.16 +0.2
1,114,955 + MPMX19_03677 0.16 +0.1
1,114,955 + MPMX19_03677 0.16 -0.5
1,114,956 - MPMX19_03677 0.16 +0.3
1,114,956 - MPMX19_03677 0.16 -0.3
1,114,956 - MPMX19_03677 0.16 -0.3
1,114,956 - MPMX19_03677 0.16 -1.8
1,114,956 - MPMX19_03677 0.16 -2.4
1,114,956 - MPMX19_03677 0.16 +0.3
1,114,956 - MPMX19_03677 0.16 -0.5
1,114,956 - MPMX19_03677 0.16 -0.7
1,114,956 - MPMX19_03677 0.16 +0.4
1,114,956 - MPMX19_03677 0.16 -1.3
1,114,956 - MPMX19_03677 0.16 -1.0
1,114,956 - MPMX19_03677 0.16 -0.8
1,114,956 - MPMX19_03677 0.16 -0.5
1,115,462 + MPMX19_03677 0.61 -0.5
1,115,462 + MPMX19_03677 0.61 -0.8
1,115,462 + MPMX19_03677 0.61 -0.4
1,115,463 - MPMX19_03677 0.61 +0.8
1,115,463 - MPMX19_03677 0.61 -0.4
1,115,463 - MPMX19_03677 0.61 +0.3
1,115,481 + MPMX19_03677 0.63 -2.3
1,115,481 + MPMX19_03677 0.63 -1.5
1,115,482 - MPMX19_03677 0.63 +0.7
1,115,576 + MPMX19_03677 0.71 -0.6
1,115,623 + MPMX19_03677 0.75 +0.9
1,115,675 + MPMX19_03677 0.80 -0.6
1,115,675 + MPMX19_03677 0.80 +0.1
1,115,675 + MPMX19_03677 0.80 -0.8
1,115,675 + MPMX19_03677 0.80 +0.7
1,115,675 + MPMX19_03677 0.80 +0.6
1,115,675 + MPMX19_03677 0.80 -0.9
1,115,675 + MPMX19_03677 0.80 -0.2
1,115,675 + MPMX19_03677 0.80 -0.6
1,115,675 + MPMX19_03677 0.80 +0.4
1,115,675 + MPMX19_03677 0.80 -0.5
1,115,675 + MPMX19_03677 0.80 -0.0
1,115,675 + MPMX19_03677 0.80 -1.3
1,115,675 + MPMX19_03677 0.80 -0.8
1,115,675 + MPMX19_03677 0.80 +0.8
1,115,675 + MPMX19_03677 0.80 -0.8
1,115,675 + MPMX19_03677 0.80 -0.2
1,115,675 + MPMX19_03677 0.80 +0.1
1,115,675 + MPMX19_03677 0.80 +0.7
1,115,675 + MPMX19_03677 0.80 +0.5
1,115,675 + MPMX19_03677 0.80 -1.0
1,115,675 + MPMX19_03677 0.80 +0.4
1,115,675 + MPMX19_03677 0.80 -0.5
1,115,675 + MPMX19_03677 0.80 -0.8
1,115,676 - MPMX19_03677 0.80 -0.6
1,115,676 - MPMX19_03677 0.80 -0.3
1,115,676 - MPMX19_03677 0.80 +0.7
1,115,676 - MPMX19_03677 0.80 -0.8
1,115,676 - MPMX19_03677 0.80 -0.4
1,115,676 - MPMX19_03677 0.80 +0.1
1,115,676 - MPMX19_03677 0.80 -0.8
1,115,676 - MPMX19_03677 0.80 +0.6
1,115,676 - MPMX19_03677 0.80 +0.3
1,115,676 - MPMX19_03677 0.80 -1.6
1,115,676 - MPMX19_03677 0.80 -0.9
1,115,676 - MPMX19_03677 0.80 +0.1
1,115,676 - MPMX19_03677 0.80 -0.8
1,115,676 - MPMX19_03677 0.80 -0.1
1,115,676 - MPMX19_03677 0.80 -0.9
1,115,676 - MPMX19_03677 0.80 -1.6
1,115,676 - MPMX19_03677 0.80 -1.0
1,115,676 - MPMX19_03677 0.80 +0.9
1,115,676 - MPMX19_03677 0.80 -0.7
1,115,676 - MPMX19_03677 0.80 -0.8
1,115,676 - MPMX19_03677 0.80 -1.5
1,115,676 - MPMX19_03677 0.80 +0.6
1,115,676 - MPMX19_03677 0.80 +0.5
1,115,676 - MPMX19_03677 0.80 +0.7
1,115,676 - MPMX19_03677 0.80 -1.0
1,115,843 + -1.2
1,115,843 + +1.3
1,115,843 + -2.3
1,115,844 - +1.4
1,115,844 - +1.0
1,115,844 - -0.5
1,115,844 - -1.6
1,115,844 - +0.4
1,115,928 + +0.2
1,115,928 + -0.2
1,115,928 + -0.5
1,115,928 + +0.2
1,115,929 - -0.5
1,115,929 - +0.5
1,115,978 + +0.7
1,115,978 + +0.3
1,115,978 + -0.2
1,115,978 + -2.2
1,115,978 + -1.3
1,115,978 + -0.3
1,115,979 - -0.3
1,115,979 - +1.1
1,115,979 - +1.0
1,115,979 - -0.1
1,115,979 - -1.5

Or see this region's nucleotide sequence