Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03669

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03667 and MPMX19_03668 overlap by 20 nucleotidesMPMX19_03668 and MPMX19_03669 overlap by 4 nucleotidesMPMX19_03669 and MPMX19_03670 overlap by 52 nucleotides MPMX19_03667: MPMX19_03667 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,104,629 to 1,105,348 _03667 MPMX19_03668: MPMX19_03668 - hypothetical protein, at 1,105,329 to 1,106,114 _03668 MPMX19_03669: MPMX19_03669 - hypothetical protein, at 1,106,111 to 1,106,893 _03669 MPMX19_03670: MPMX19_03670 - Tetracycline 7-halogenase, at 1,106,842 to 1,108,155 _03670 Position (kb) 1106 1107Strain fitness (log2 ratio) -2 -1 0 1 2at 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.492 kb on + strand, within MPMX19_03668at 1105.492 kb on + strand, within MPMX19_03668at 1105.493 kb on - strand, within MPMX19_03668at 1105.735 kb on + strand, within MPMX19_03668at 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.068 kb on + strandat 1106.069 kb on - strandat 1106.069 kb on - strandat 1106.069 kb on - strandat 1106.069 kb on - strandat 1106.069 kb on - strandat 1106.069 kb on - strandat 1106.069 kb on - strandat 1106.202 kb on + strand, within MPMX19_03669at 1106.203 kb on - strand, within MPMX19_03669at 1106.203 kb on - strand, within MPMX19_03669at 1106.451 kb on + strand, within MPMX19_03669at 1106.451 kb on + strand, within MPMX19_03669at 1106.451 kb on + strand, within MPMX19_03669at 1106.451 kb on + strand, within MPMX19_03669at 1106.451 kb on + strand, within MPMX19_03669at 1106.452 kb on - strand, within MPMX19_03669at 1106.452 kb on - strand, within MPMX19_03669at 1106.452 kb on - strand, within MPMX19_03669at 1106.452 kb on - strand, within MPMX19_03669at 1106.452 kb on - strand, within MPMX19_03669at 1106.493 kb on + strand, within MPMX19_03669at 1106.494 kb on - strand, within MPMX19_03669at 1106.664 kb on + strand, within MPMX19_03669at 1106.664 kb on + strand, within MPMX19_03669at 1106.664 kb on + strand, within MPMX19_03669at 1106.664 kb on + strand, within MPMX19_03669at 1106.664 kb on + strand, within MPMX19_03669at 1106.664 kb on + strand, within MPMX19_03669at 1106.664 kb on + strand, within MPMX19_03669at 1106.665 kb on - strand, within MPMX19_03669at 1106.665 kb on - strand, within MPMX19_03669at 1106.808 kb on + strand, within MPMX19_03669at 1106.809 kb on - strand, within MPMX19_03669at 1106.843 kb on + strandat 1106.843 kb on + strandat 1106.844 kb on - strandat 1106.844 kb on - strandat 1106.900 kb on + strandat 1106.900 kb on + strandat 1106.900 kb on + strandat 1106.900 kb on + strandat 1106.900 kb on + strandat 1106.900 kb on + strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.901 kb on - strandat 1106.933 kb on + strandat 1106.933 kb on + strandat 1106.933 kb on + strandat 1106.933 kb on + strandat 1106.934 kb on - strandat 1106.934 kb on - strandat 1106.934 kb on - strandat 1106.934 kb on - strandat 1106.936 kb on + strandat 1106.936 kb on + strandat 1106.936 kb on + strandat 1106.936 kb on + strandat 1106.936 kb on + strandat 1106.937 kb on - strandat 1106.937 kb on - strandat 1106.937 kb on - strandat 1106.950 kb on + strandat 1106.951 kb on - strandat 1107.083 kb on + strand, within MPMX19_03670at 1107.083 kb on + strand, within MPMX19_03670at 1107.084 kb on - strand, within MPMX19_03670at 1107.084 kb on - strand, within MPMX19_03670at 1107.084 kb on - strand, within MPMX19_03670at 1107.084 kb on - strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.089 kb on + strand, within MPMX19_03670at 1107.090 kb on - strand, within MPMX19_03670at 1107.090 kb on - strand, within MPMX19_03670at 1107.090 kb on - strand, within MPMX19_03670at 1107.090 kb on - strand, within MPMX19_03670at 1107.090 kb on - strand, within MPMX19_03670at 1107.090 kb on - strand, within MPMX19_03670at 1107.090 kb on - strand, within MPMX19_03670at 1107.221 kb on + strand, within MPMX19_03670at 1107.221 kb on + strand, within MPMX19_03670at 1107.221 kb on + strand, within MPMX19_03670at 1107.222 kb on - strand, within MPMX19_03670at 1107.222 kb on - strand, within MPMX19_03670at 1107.278 kb on + strand, within MPMX19_03670at 1107.278 kb on + strand, within MPMX19_03670at 1107.278 kb on + strand, within MPMX19_03670at 1107.278 kb on + strand, within MPMX19_03670at 1107.278 kb on + strand, within MPMX19_03670at 1107.278 kb on + strand, within MPMX19_03670at 1107.278 kb on + strand, within MPMX19_03670at 1107.279 kb on + strand, within MPMX19_03670at 1107.279 kb on - strand, within MPMX19_03670at 1107.279 kb on - strand, within MPMX19_03670at 1107.279 kb on - strand, within MPMX19_03670at 1107.279 kb on - strand, within MPMX19_03670at 1107.279 kb on - strand, within MPMX19_03670at 1107.308 kb on + strand, within MPMX19_03670at 1107.309 kb on - strand, within MPMX19_03670at 1107.309 kb on - strand, within MPMX19_03670at 1107.437 kb on + strand, within MPMX19_03670at 1107.437 kb on + strand, within MPMX19_03670at 1107.437 kb on + strand, within MPMX19_03670at 1107.437 kb on + strand, within MPMX19_03670at 1107.437 kb on + strand, within MPMX19_03670at 1107.438 kb on - strand, within MPMX19_03670at 1107.438 kb on - strand, within MPMX19_03670at 1107.438 kb on - strand, within MPMX19_03670at 1107.438 kb on - strand, within MPMX19_03670at 1107.438 kb on - strand, within MPMX19_03670at 1107.440 kb on + strand, within MPMX19_03670at 1107.440 kb on + strand, within MPMX19_03670at 1107.440 kb on + strand, within MPMX19_03670at 1107.440 kb on + strand, within MPMX19_03670at 1107.441 kb on - strand, within MPMX19_03670at 1107.441 kb on - strand, within MPMX19_03670at 1107.441 kb on - strand, within MPMX19_03670at 1107.810 kb on + strand, within MPMX19_03670at 1107.810 kb on + strand, within MPMX19_03670at 1107.811 kb on - strand, within MPMX19_03670at 1107.811 kb on - strand, within MPMX19_03670at 1107.811 kb on - strand, within MPMX19_03670at 1107.811 kb on - strand, within MPMX19_03670at 1107.811 kb on - strand, within MPMX19_03670at 1107.845 kb on + strand, within MPMX19_03670at 1107.845 kb on + strand, within MPMX19_03670at 1107.845 kb on + strand, within MPMX19_03670at 1107.846 kb on - strand, within MPMX19_03670

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,105,304 + +1.5
1,105,304 + -1.6
1,105,304 + +0.8
1,105,304 + +0.9
1,105,304 + -0.2
1,105,305 - +0.3
1,105,305 - +0.2
1,105,305 - +0.2
1,105,305 - +0.4
1,105,305 - +0.1
1,105,305 - -1.0
1,105,305 - +0.1
1,105,305 - +0.1
1,105,305 - -1.2
1,105,305 - -1.0
1,105,305 - -0.0
1,105,453 + MPMX19_03668 0.16 -1.3
1,105,453 + MPMX19_03668 0.16 -1.1
1,105,453 + MPMX19_03668 0.16 -1.0
1,105,453 + MPMX19_03668 0.16 -1.9
1,105,453 + MPMX19_03668 0.16 -1.2
1,105,453 + MPMX19_03668 0.16 -2.2
1,105,453 + MPMX19_03668 0.16 -0.6
1,105,453 + MPMX19_03668 0.16 +0.3
1,105,453 + MPMX19_03668 0.16 -0.2
1,105,453 + MPMX19_03668 0.16 -1.2
1,105,454 - MPMX19_03668 0.16 -0.1
1,105,454 - MPMX19_03668 0.16 -0.8
1,105,454 - MPMX19_03668 0.16 -0.0
1,105,454 - MPMX19_03668 0.16 +1.0
1,105,454 - MPMX19_03668 0.16 -0.8
1,105,454 - MPMX19_03668 0.16 +0.5
1,105,454 - MPMX19_03668 0.16 -0.5
1,105,454 - MPMX19_03668 0.16 -0.2
1,105,454 - MPMX19_03668 0.16 -1.0
1,105,492 + MPMX19_03668 0.21 +0.2
1,105,492 + MPMX19_03668 0.21 +0.5
1,105,493 - MPMX19_03668 0.21 +0.8
1,105,735 + MPMX19_03668 0.52 -0.5
1,106,068 + +0.7
1,106,068 + +0.2
1,106,068 + +1.1
1,106,068 + -0.1
1,106,068 + -0.9
1,106,068 + +0.1
1,106,068 + -1.8
1,106,068 + +0.7
1,106,068 + -2.0
1,106,069 - +0.7
1,106,069 - -1.3
1,106,069 - -0.3
1,106,069 - +0.1
1,106,069 - +0.9
1,106,069 - -1.5
1,106,069 - -1.2
1,106,202 + MPMX19_03669 0.12 -1.4
1,106,203 - MPMX19_03669 0.12 -0.8
1,106,203 - MPMX19_03669 0.12 +0.4
1,106,451 + MPMX19_03669 0.43 -0.7
1,106,451 + MPMX19_03669 0.43 +0.1
1,106,451 + MPMX19_03669 0.43 -0.2
1,106,451 + MPMX19_03669 0.43 -1.6
1,106,451 + MPMX19_03669 0.43 +0.7
1,106,452 - MPMX19_03669 0.44 +0.5
1,106,452 - MPMX19_03669 0.44 -0.5
1,106,452 - MPMX19_03669 0.44 +0.1
1,106,452 - MPMX19_03669 0.44 -0.6
1,106,452 - MPMX19_03669 0.44 -0.3
1,106,493 + MPMX19_03669 0.49 +0.3
1,106,494 - MPMX19_03669 0.49 +0.7
1,106,664 + MPMX19_03669 0.71 +0.1
1,106,664 + MPMX19_03669 0.71 +0.7
1,106,664 + MPMX19_03669 0.71 -0.2
1,106,664 + MPMX19_03669 0.71 -0.5
1,106,664 + MPMX19_03669 0.71 -0.2
1,106,664 + MPMX19_03669 0.71 +0.5
1,106,664 + MPMX19_03669 0.71 +1.7
1,106,665 - MPMX19_03669 0.71 -1.5
1,106,665 - MPMX19_03669 0.71 -0.3
1,106,808 + MPMX19_03669 0.89 -1.3
1,106,809 - MPMX19_03669 0.89 +0.5
1,106,843 + +0.5
1,106,843 + +0.8
1,106,844 - +0.1
1,106,844 - -0.0
1,106,900 + +0.0
1,106,900 + +0.2
1,106,900 + -0.3
1,106,900 + -0.7
1,106,900 + -1.5
1,106,900 + +0.0
1,106,901 - +0.7
1,106,901 - +0.3
1,106,901 - -0.6
1,106,901 - -0.8
1,106,901 - -0.9
1,106,901 - -1.6
1,106,901 - -0.3
1,106,901 - -2.5
1,106,901 - -1.3
1,106,933 + -0.0
1,106,933 + +0.5
1,106,933 + -0.0
1,106,933 + -0.0
1,106,934 - -0.5
1,106,934 - -0.7
1,106,934 - -1.3
1,106,934 - +1.3
1,106,936 + -1.8
1,106,936 + +0.7
1,106,936 + -2.2
1,106,936 + -0.1
1,106,936 + -0.2
1,106,937 - -1.0
1,106,937 - -0.2
1,106,937 - +0.3
1,106,950 + +0.1
1,106,951 - +0.5
1,107,083 + MPMX19_03670 0.18 +0.4
1,107,083 + MPMX19_03670 0.18 -0.6
1,107,084 - MPMX19_03670 0.18 -0.1
1,107,084 - MPMX19_03670 0.18 -1.3
1,107,084 - MPMX19_03670 0.18 +1.0
1,107,084 - MPMX19_03670 0.18 +0.1
1,107,089 + MPMX19_03670 0.19 -0.0
1,107,089 + MPMX19_03670 0.19 +0.6
1,107,089 + MPMX19_03670 0.19 -0.1
1,107,089 + MPMX19_03670 0.19 -0.7
1,107,089 + MPMX19_03670 0.19 -0.2
1,107,089 + MPMX19_03670 0.19 -1.2
1,107,089 + MPMX19_03670 0.19 +0.9
1,107,089 + MPMX19_03670 0.19 +0.2
1,107,090 - MPMX19_03670 0.19 -0.1
1,107,090 - MPMX19_03670 0.19 -0.2
1,107,090 - MPMX19_03670 0.19 -1.2
1,107,090 - MPMX19_03670 0.19 -0.2
1,107,090 - MPMX19_03670 0.19 +0.1
1,107,090 - MPMX19_03670 0.19 +0.5
1,107,090 - MPMX19_03670 0.19 -0.7
1,107,221 + MPMX19_03670 0.29 -0.5
1,107,221 + MPMX19_03670 0.29 -1.3
1,107,221 + MPMX19_03670 0.29 -1.8
1,107,222 - MPMX19_03670 0.29 +0.7
1,107,222 - MPMX19_03670 0.29 -0.1
1,107,278 + MPMX19_03670 0.33 +0.0
1,107,278 + MPMX19_03670 0.33 +0.8
1,107,278 + MPMX19_03670 0.33 -0.1
1,107,278 + MPMX19_03670 0.33 -0.9
1,107,278 + MPMX19_03670 0.33 +0.4
1,107,278 + MPMX19_03670 0.33 -0.1
1,107,278 + MPMX19_03670 0.33 -0.5
1,107,279 + MPMX19_03670 0.33 -1.8
1,107,279 - MPMX19_03670 0.33 -0.1
1,107,279 - MPMX19_03670 0.33 +0.2
1,107,279 - MPMX19_03670 0.33 -2.3
1,107,279 - MPMX19_03670 0.33 -0.2
1,107,279 - MPMX19_03670 0.33 +0.6
1,107,308 + MPMX19_03670 0.35 +2.2
1,107,309 - MPMX19_03670 0.36 +0.2
1,107,309 - MPMX19_03670 0.36 +0.5
1,107,437 + MPMX19_03670 0.45 +0.3
1,107,437 + MPMX19_03670 0.45 +1.0
1,107,437 + MPMX19_03670 0.45 +1.1
1,107,437 + MPMX19_03670 0.45 -0.3
1,107,437 + MPMX19_03670 0.45 -0.8
1,107,438 - MPMX19_03670 0.45 -0.9
1,107,438 - MPMX19_03670 0.45 +0.1
1,107,438 - MPMX19_03670 0.45 +0.2
1,107,438 - MPMX19_03670 0.45 +0.1
1,107,438 - MPMX19_03670 0.45 -0.4
1,107,440 + MPMX19_03670 0.46 -0.6
1,107,440 + MPMX19_03670 0.46 +0.3
1,107,440 + MPMX19_03670 0.46 -1.0
1,107,440 + MPMX19_03670 0.46 -0.0
1,107,441 - MPMX19_03670 0.46 +0.5
1,107,441 - MPMX19_03670 0.46 -0.7
1,107,441 - MPMX19_03670 0.46 -0.4
1,107,810 + MPMX19_03670 0.74 +0.9
1,107,810 + MPMX19_03670 0.74 -0.3
1,107,811 - MPMX19_03670 0.74 -0.7
1,107,811 - MPMX19_03670 0.74 -0.8
1,107,811 - MPMX19_03670 0.74 -2.5
1,107,811 - MPMX19_03670 0.74 -0.1
1,107,811 - MPMX19_03670 0.74 +1.8
1,107,845 + MPMX19_03670 0.76 +0.5
1,107,845 + MPMX19_03670 0.76 +0.4
1,107,845 + MPMX19_03670 0.76 -0.5
1,107,846 - MPMX19_03670 0.76 +0.8

Or see this region's nucleotide sequence