Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03624

Experiment: NL-CCM, start OD=0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.1
1,058,212	+		MPMX19_03623	0.40	+1.1
1,058,213	-		MPMX19_03623	0.41	-0.0
1,058,313	+		MPMX19_03623	0.50	-0.3
1,058,314	-		MPMX19_03623	0.50	-1.8
1,058,341	+		MPMX19_03623	0.53	-0.0
1,058,342	-		MPMX19_03623	0.53	+0.3
1,058,353	+		MPMX19_03623	0.54	-0.4
1,058,353	+		MPMX19_03623	0.54	-0.2
1,058,353	+		MPMX19_03623	0.54	-0.3
1,058,353	+		MPMX19_03623	0.54	+1.2
1,058,354	-		MPMX19_03623	0.54	+0.3
1,058,354	-		MPMX19_03623	0.54	-0.2
1,058,356	+		MPMX19_03623	0.54	-0.4
1,058,357	-		MPMX19_03623	0.54	+1.0
1,058,357	-		MPMX19_03623	0.54	+0.2
1,058,357	-		MPMX19_03623	0.54	-2.3
1,058,357	-		MPMX19_03623	0.54	-0.5
1,058,452	+		MPMX19_03623	0.64	+0.8
1,058,452	+		MPMX19_03623	0.64	-1.6
1,058,452	+		MPMX19_03623	0.64	+0.5
1,058,453	-		MPMX19_03623	0.64	-0.6
1,058,453	-		MPMX19_03623	0.64	-1.4
1,058,453	-		MPMX19_03623	0.64	+0.7
1,058,453	-		MPMX19_03623	0.64	-0.6
1,058,453	-		MPMX19_03623	0.64	-0.8
1,058,453	-		MPMX19_03623	0.64	+0.1
1,058,453	-		MPMX19_03623	0.64	-0.5
1,058,453	-		MPMX19_03623	0.64	-0.8
1,058,453	-		MPMX19_03623	0.64	+0.7
1,058,453	-		MPMX19_03623	0.64	-0.8
1,058,530	+		MPMX19_03623	0.71	-0.6
1,058,530	+		MPMX19_03623	0.71	-0.8
1,058,530	+		MPMX19_03623	0.71	+0.0
1,058,530	+		MPMX19_03623	0.71	-3.5
1,058,530	+		MPMX19_03623	0.71	+0.7
1,058,531	-		MPMX19_03623	0.71	-0.3
1,058,531	-		MPMX19_03623	0.71	-1.3
1,058,531	-		MPMX19_03623	0.71	-0.8
1,058,531	-		MPMX19_03623	0.71	+0.0
1,058,531	-		MPMX19_03623	0.71	-2.2
1,058,572	+		MPMX19_03623	0.75	+1.0
1,058,572	+		MPMX19_03623	0.75	+0.6
1,058,572	+		MPMX19_03623	0.75	-0.0
1,058,572	+		MPMX19_03623	0.75	-0.1
1,058,572	+		MPMX19_03623	0.75	-1.6
1,058,572	+		MPMX19_03623	0.75	+0.3
1,058,572	+		MPMX19_03623	0.75	-0.3
1,058,572	+		MPMX19_03623	0.75	-0.6
1,058,572	+		MPMX19_03623	0.75	-0.2
1,058,572	+		MPMX19_03623	0.75	-0.2
1,058,572	+		MPMX19_03623	0.75	-0.3
1,058,572	+		MPMX19_03623	0.75	+0.0
1,058,572	+		MPMX19_03623	0.75	+1.1
1,058,572	+		MPMX19_03623	0.75	+0.1
1,058,572	+		MPMX19_03623	0.75	+0.5
1,058,572	+		MPMX19_03623	0.75	-0.8
1,058,572	+		MPMX19_03623	0.75	-0.0
1,058,572	+		MPMX19_03623	0.75	-0.4
1,058,573	-		MPMX19_03623	0.75	+0.3
1,058,573	-		MPMX19_03623	0.75	+1.0
1,058,573	-		MPMX19_03623	0.75	-0.8
1,058,573	-		MPMX19_03623	0.75	-0.3
1,058,573	-		MPMX19_03623	0.75	-0.0
1,058,573	-		MPMX19_03623	0.75	-0.9
1,058,573	-		MPMX19_03623	0.75	+0.3
1,058,573	-		MPMX19_03623	0.75	-0.0
1,058,573	-		MPMX19_03623	0.75	-0.1
1,058,573	-		MPMX19_03623	0.75	-1.3
1,058,573	-		MPMX19_03623	0.75	+0.2
1,058,761	+				-0.6
1,058,872	+				-0.8
1,058,872	+				+0.5
1,058,873	-				-0.5
1,058,873	-				+0.6
1,058,873	-				-0.2
1,058,883	+				-0.7
1,058,883	+				+0.1
1,058,883	+				+1.4
1,058,883	+				+1.2
1,058,884	-				-0.0
1,058,884	-				-1.2
1,059,229	+		MPMX19_03624	0.38	+0.5
1,059,229	+		MPMX19_03624	0.38	-1.0
1,059,230	-		MPMX19_03624	0.38	+0.4
1,059,230	-		MPMX19_03624	0.38	-0.5
1,059,230	-		MPMX19_03624	0.38	-0.9
1,059,280	+		MPMX19_03624	0.43	-3.2
1,059,280	+		MPMX19_03624	0.43	-1.9
1,059,280	+		MPMX19_03624	0.43	-0.5
1,059,281	-		MPMX19_03624	0.43	-2.2
1,059,281	-		MPMX19_03624	0.43	+1.7
1,059,281	-		MPMX19_03624	0.43	-0.5
1,059,281	-		MPMX19_03624	0.43	-1.4
1,059,281	-		MPMX19_03624	0.43	+0.3
1,059,281	-		MPMX19_03624	0.43	+1.1
1,059,281	-		MPMX19_03624	0.43	-0.9
1,059,281	-		MPMX19_03624	0.43	-0.0
1,059,281	-		MPMX19_03624	0.43	-0.4
1,059,281	-		MPMX19_03624	0.43	-0.6
1,059,281	-		MPMX19_03624	0.43	-2.9
1,059,325	+		MPMX19_03624	0.47	-0.8
1,059,325	+		MPMX19_03624	0.47	+0.0
1,059,325	+		MPMX19_03624	0.47	+0.7
1,059,325	+		MPMX19_03624	0.47	-0.9
1,059,325	+		MPMX19_03624	0.47	+0.8
1,059,326	-		MPMX19_03624	0.48	+0.1
1,059,326	-		MPMX19_03624	0.48	+0.1
1,059,326	-		MPMX19_03624	0.48	+0.2
1,059,326	-		MPMX19_03624	0.48	+1.1
1,059,326	-		MPMX19_03624	0.48	-1.0
1,059,326	-		MPMX19_03624	0.48	-0.3
1,059,340	+		MPMX19_03624	0.49	-0.8
1,059,340	+		MPMX19_03624	0.49	-1.6
1,059,340	+		MPMX19_03624	0.49	-1.0
1,059,341	-		MPMX19_03624	0.49	+0.1
1,059,341	-		MPMX19_03624	0.49	-0.7
1,059,341	-		MPMX19_03624	0.49	-1.4
1,059,341	-		MPMX19_03624	0.49	+0.0
1,059,341	-		MPMX19_03624	0.49	+1.1
1,059,341	-		MPMX19_03624	0.49	+0.2
1,059,434	-		MPMX19_03624	0.58	-1.5
1,059,463	+		MPMX19_03624	0.61	-2.2
1,059,464	-		MPMX19_03624	0.61	-0.0
1,059,464	-		MPMX19_03624	0.61	+0.7
1,059,464	-		MPMX19_03624	0.61	+0.5
1,059,464	-		MPMX19_03624	0.61	+0.2
1,059,698	-		MPMX19_03624	0.85	-0.7
1,059,698	-		MPMX19_03624	0.85	+0.4
1,059,715	+		MPMX19_03624	0.87	-0.8
1,059,715	+		MPMX19_03624	0.87	-1.2
1,059,715	+		MPMX19_03624	0.87	-1.3
1,059,715	+		MPMX19_03624	0.87	+0.1
1,059,715	+		MPMX19_03624	0.87	+0.8
1,059,715	+		MPMX19_03624	0.87	-0.5
1,059,716	-		MPMX19_03624	0.87	-1.8
1,059,716	-		MPMX19_03624	0.87	-0.6
1,059,775	+				-0.0
1,059,775	+				-0.0
1,059,775	+				-1.6
1,059,775	+				-1.0
1,059,775	+				-0.3
1,059,775	+				-0.7
1,059,775	+				-1.4
1,059,775	+				-1.8
1,059,775	+				-0.9
1,059,775	+				-0.4
1,059,775	+				-0.3
1,059,775	+				-0.1
1,059,775	+				+1.1
1,059,775	+				+1.1
1,059,775	+				-0.0
1,059,775	+				-0.6
1,059,775	+				+0.0
1,059,775	+				-0.7
1,059,775	+				+0.3
1,059,776	-				-0.8
1,059,776	-				-1.0
1,059,776	-				-0.4
1,059,776	-				-0.8
1,059,776	-				+0.5
1,059,776	-				-2.3
1,059,776	-				+1.0
1,059,776	-				-0.0
1,059,776	-				+2.1
1,059,776	-				+0.5
1,059,776	-				+0.5
1,059,776	-				-0.8
1,059,823	+				-0.7
1,059,823	+				+0.2
1,059,823	+				-1.3
1,059,823	+				-0.5
1,059,823	+				+0.9
1,059,824	-				-0.4
1,059,824	-				-0.5
1,059,824	-				-0.9
1,059,841	+				+2.1
1,059,896	+				-0.0
1,059,896	+				-0.5
1,059,897	-				-0.4
1,059,897	-				+0.4
1,060,101	+		MPMX19_03625	0.14	-0.0
1,060,101	+		MPMX19_03625	0.14	-0.4
1,060,101	+		MPMX19_03625	0.14	-1.5
1,060,101	+		MPMX19_03625	0.14	-0.2
1,060,101	+		MPMX19_03625	0.14	-0.6
1,060,102	-		MPMX19_03625	0.14	-0.5
1,060,102	-		MPMX19_03625	0.14	+0.1
1,060,102	-		MPMX19_03625	0.14	-1.3
1,060,102	-		MPMX19_03625	0.14	+0.9
1,060,102	-		MPMX19_03625	0.14	-0.5
1,060,102	-		MPMX19_03625	0.14	+0.4
1,060,102	-		MPMX19_03625	0.14	+0.3
1,060,102	-		MPMX19_03625	0.14	-0.3
1,060,102	-		MPMX19_03625	0.14	-1.6
1,060,102	-		MPMX19_03625	0.14	-1.0
1,060,102	-		MPMX19_03625	0.14	-0.9
1,060,125	+		MPMX19_03625	0.17	-0.3
1,060,126	-		MPMX19_03625	0.17	-0.8
1,060,126	-		MPMX19_03625	0.17	-0.8
1,060,126	-		MPMX19_03625	0.17	-1.8
1,060,126	-		MPMX19_03625	0.17	-0.4
1,060,224	+		MPMX19_03625	0.26	-0.2
1,060,224	+		MPMX19_03625	0.26	-0.2
1,060,224	+		MPMX19_03625	0.26	+0.1
1,060,224	+		MPMX19_03625	0.26	-2.2
1,060,224	+		MPMX19_03625	0.26	-0.0
1,060,225	-		MPMX19_03625	0.26	-0.1
1,060,225	-		MPMX19_03625	0.26	-0.0
1,060,225	-		MPMX19_03625	0.26	-0.1
1,060,236	+		MPMX19_03625	0.27	+0.0
1,060,236	+		MPMX19_03625	0.27	-1.6
1,060,236	+		MPMX19_03625	0.27	+1.3
1,060,236	+		MPMX19_03625	0.27	+0.2
1,060,236	+		MPMX19_03625	0.27	+0.1
1,060,236	+		MPMX19_03625	0.27	-0.5
1,060,236	+		MPMX19_03625	0.27	-0.2
1,060,236	+		MPMX19_03625	0.27	+0.5
1,060,237	-		MPMX19_03625	0.27	-0.7
1,060,237	-		MPMX19_03625	0.27	-1.0
1,060,237	-		MPMX19_03625	0.27	-1.3
1,060,237	-		MPMX19_03625	0.27	-2.5
1,060,237	-		MPMX19_03625	0.27	+0.2
1,060,237	-		MPMX19_03625	0.27	-1.4
1,060,237	-		MPMX19_03625	0.27	-0.1
1,060,237	-		MPMX19_03625	0.27	-1.2
1,060,237	-		MPMX19_03625	0.27	+1.8
1,060,237	-		MPMX19_03625	0.27	-0.3
1,060,237	-		MPMX19_03625	0.27	+0.5
1,060,237	-		MPMX19_03625	0.27	+1.0
1,060,237	-		MPMX19_03625	0.27	+1.2
1,060,237	-		MPMX19_03625	0.27	+0.1
1,060,383	+		MPMX19_03625	0.41	+1.0
1,060,383	+		MPMX19_03625	0.41	-0.0
1,060,383	+		MPMX19_03625	0.41	+0.8
1,060,383	+		MPMX19_03625	0.41	-0.0
1,060,383	+		MPMX19_03625	0.41	-0.2
1,060,383	+		MPMX19_03625	0.41	-0.9
1,060,383	+		MPMX19_03625	0.41	-0.9
1,060,384	-		MPMX19_03625	0.41	-1.9
1,060,384	-		MPMX19_03625	0.41	-1.5
1,060,384	-		MPMX19_03625	0.41	+1.7
1,060,384	-		MPMX19_03625	0.41	-0.5
1,060,384	-		MPMX19_03625	0.41	-0.1
1,060,384	-		MPMX19_03625	0.41	+1.1
1,060,384	-		MPMX19_03625	0.41	-1.0
1,060,389	+		MPMX19_03625	0.41	+0.1
1,060,389	+		MPMX19_03625	0.41	+0.9
1,060,500	+		MPMX19_03625	0.52	+0.1
1,060,500	+		MPMX19_03625	0.52	-0.8
1,060,500	+		MPMX19_03625	0.52	-1.5
1,060,500	+		MPMX19_03625	0.52	+1.0
1,060,501	-		MPMX19_03625	0.52	-0.2
1,060,501	-		MPMX19_03625	0.52	+1.0
1,060,501	-		MPMX19_03625	0.52	-0.0
1,060,629	+		MPMX19_03625	0.64	+1.7
1,060,629	+		MPMX19_03625	0.64	+1.5
1,060,629	+		MPMX19_03625	0.64	-0.8
1,060,629	+		MPMX19_03625	0.64	+0.8
1,060,629	+		MPMX19_03625	0.64	-0.3
1,060,629	+		MPMX19_03625	0.64	-1.3
1,060,629	+		MPMX19_03625	0.64	+1.1
1,060,629	+		MPMX19_03625	0.64	-2.1
1,060,630	-		MPMX19_03625	0.64	+1.8
1,060,638	+		MPMX19_03625	0.65	+0.5
1,060,719	+		MPMX19_03625	0.72	-2.0
1,060,719	+		MPMX19_03625	0.72	+0.1
1,060,720	-		MPMX19_03625	0.72	-0.0
1,060,720	-		MPMX19_03625	0.72	+0.1
1,060,720	-		MPMX19_03625	0.72	+0.5
1,060,728	+		MPMX19_03625	0.73	-0.8
1,060,728	+		MPMX19_03625	0.73	+0.7
1,060,818	+		MPMX19_03625	0.81	+0.4
1,060,818	+		MPMX19_03625	0.81	-0.0
1,060,819	-		MPMX19_03625	0.82	-0.0
1,060,819	-		MPMX19_03625	0.82	-1.0