Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03576

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03574 and MPMX19_03575 are separated by 12 nucleotidesMPMX19_03575 and MPMX19_03576 are separated by 153 nucleotidesMPMX19_03576 and MPMX19_03577 are separated by 63 nucleotides MPMX19_03574: MPMX19_03574 - Aurachin B dehydrogenase, at 995,399 to 996,286 _03574 MPMX19_03575: MPMX19_03575 - HTH-type transcriptional regulator NimR, at 996,299 to 997,075 _03575 MPMX19_03576: MPMX19_03576 - Fosmidomycin resistance protein, at 997,229 to 998,425 _03576 MPMX19_03577: MPMX19_03577 - Pyridoxine 4-dehydrogenase, at 998,489 to 999,379 _03577 Position (kb) 997 998 999Strain fitness (log2 ratio) -2 -1 0 1 2 3at 996.318 kb on + strandat 996.381 kb on + strand, within MPMX19_03575at 996.382 kb on - strand, within MPMX19_03575at 996.382 kb on - strand, within MPMX19_03575at 996.382 kb on - strand, within MPMX19_03575at 996.663 kb on + strand, within MPMX19_03575at 996.708 kb on + strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 997.005 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.139 kb on + strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.237 kb on + strandat 997.237 kb on + strandat 997.346 kb on + strandat 997.409 kb on + strand, within MPMX19_03576at 997.409 kb on + strand, within MPMX19_03576at 997.409 kb on + strand, within MPMX19_03576at 997.409 kb on + strand, within MPMX19_03576at 997.410 kb on - strand, within MPMX19_03576at 997.475 kb on + strand, within MPMX19_03576at 997.475 kb on + strand, within MPMX19_03576at 997.476 kb on - strand, within MPMX19_03576at 997.476 kb on - strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.931 kb on + strand, within MPMX19_03576at 997.931 kb on + strand, within MPMX19_03576at 997.932 kb on - strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.964 kb on + strand, within MPMX19_03576at 997.964 kb on + strand, within MPMX19_03576at 997.964 kb on + strand, within MPMX19_03576at 997.965 kb on - strand, within MPMX19_03576at 998.141 kb on + strand, within MPMX19_03576at 998.141 kb on + strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.354 kb on + strandat 998.355 kb on - strandat 998.423 kb on + strandat 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.981 kb on - strand, within MPMX19_03577at 998.981 kb on - strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.391 kb on + strandat 999.392 kb on - strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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996,318 + -0.6
996,381 + MPMX19_03575 0.11 +0.1
996,382 - MPMX19_03575 0.11 -0.4
996,382 - MPMX19_03575 0.11 -1.0
996,382 - MPMX19_03575 0.11 -0.6
996,663 + MPMX19_03575 0.47 +0.1
996,708 + MPMX19_03575 0.53 -0.3
996,709 - MPMX19_03575 0.53 -0.1
996,709 - MPMX19_03575 0.53 -1.3
996,709 - MPMX19_03575 0.53 -0.8
996,709 - MPMX19_03575 0.53 +0.5
996,709 - MPMX19_03575 0.53 -0.6
997,005 + -1.6
997,133 + +0.2
997,133 + -0.8
997,133 + -0.1
997,133 + -0.5
997,133 + +1.0
997,133 + +0.1
997,133 + -0.3
997,133 + +0.4
997,133 + +0.5
997,134 - -0.4
997,134 - +0.0
997,134 - -1.3
997,134 - +0.9
997,134 - +0.4
997,139 + -1.1
997,140 - +1.5
997,140 - -0.8
997,140 - +1.8
997,140 - +0.1
997,140 - -2.3
997,237 + -0.1
997,237 + -0.5
997,346 + -1.1
997,409 + MPMX19_03576 0.15 -0.3
997,409 + MPMX19_03576 0.15 -1.9
997,409 + MPMX19_03576 0.15 +0.6
997,409 + MPMX19_03576 0.15 +0.1
997,410 - MPMX19_03576 0.15 +0.5
997,475 + MPMX19_03576 0.21 -0.5
997,475 + MPMX19_03576 0.21 +1.0
997,476 - MPMX19_03576 0.21 +0.1
997,476 - MPMX19_03576 0.21 +2.3
997,925 + MPMX19_03576 0.58 +0.5
997,925 + MPMX19_03576 0.58 +0.3
997,925 + MPMX19_03576 0.58 +0.1
997,925 + MPMX19_03576 0.58 -0.1
997,925 + MPMX19_03576 0.58 +0.3
997,925 + MPMX19_03576 0.58 -0.3
997,925 + MPMX19_03576 0.58 +0.0
997,925 + MPMX19_03576 0.58 +0.4
997,925 + MPMX19_03576 0.58 -1.3
997,926 - MPMX19_03576 0.58 -0.5
997,926 - MPMX19_03576 0.58 -0.2
997,926 - MPMX19_03576 0.58 +0.6
997,926 - MPMX19_03576 0.58 -0.5
997,926 - MPMX19_03576 0.58 +0.2
997,926 - MPMX19_03576 0.58 +1.2
997,926 - MPMX19_03576 0.58 -0.4
997,926 - MPMX19_03576 0.58 -0.4
997,926 - MPMX19_03576 0.58 +0.3
997,931 + MPMX19_03576 0.59 +0.2
997,931 + MPMX19_03576 0.59 +0.1
997,932 - MPMX19_03576 0.59 -0.5
997,952 + MPMX19_03576 0.60 +1.3
997,952 + MPMX19_03576 0.60 +0.2
997,952 + MPMX19_03576 0.60 -1.9
997,952 + MPMX19_03576 0.60 -0.3
997,952 + MPMX19_03576 0.60 +0.5
997,953 - MPMX19_03576 0.60 +1.1
997,953 - MPMX19_03576 0.60 -0.5
997,953 - MPMX19_03576 0.60 -0.6
997,953 - MPMX19_03576 0.60 +0.5
997,953 - MPMX19_03576 0.60 +1.5
997,953 - MPMX19_03576 0.60 -0.5
997,953 - MPMX19_03576 0.60 -1.1
997,955 + MPMX19_03576 0.61 +0.1
997,955 + MPMX19_03576 0.61 +0.7
997,955 + MPMX19_03576 0.61 -1.0
997,955 + MPMX19_03576 0.61 -0.3
997,955 + MPMX19_03576 0.61 +0.1
997,955 + MPMX19_03576 0.61 +0.2
997,955 + MPMX19_03576 0.61 -0.1
997,955 + MPMX19_03576 0.61 -0.1
997,955 + MPMX19_03576 0.61 +0.1
997,955 + MPMX19_03576 0.61 +0.5
997,956 - MPMX19_03576 0.61 +1.2
997,956 - MPMX19_03576 0.61 +0.5
997,956 - MPMX19_03576 0.61 -1.1
997,956 - MPMX19_03576 0.61 -0.7
997,956 - MPMX19_03576 0.61 -0.5
997,956 - MPMX19_03576 0.61 -0.2
997,956 - MPMX19_03576 0.61 -0.7
997,956 - MPMX19_03576 0.61 +0.0
997,956 - MPMX19_03576 0.61 +0.7
997,956 - MPMX19_03576 0.61 -0.1
997,956 - MPMX19_03576 0.61 +0.0
997,956 - MPMX19_03576 0.61 +0.3
997,956 - MPMX19_03576 0.61 -0.8
997,964 + MPMX19_03576 0.61 +0.3
997,964 + MPMX19_03576 0.61 +3.5
997,964 + MPMX19_03576 0.61 +0.9
997,965 - MPMX19_03576 0.61 +0.5
998,141 + MPMX19_03576 0.76 +0.2
998,141 + MPMX19_03576 0.76 +0.2
998,142 - MPMX19_03576 0.76 +0.4
998,142 - MPMX19_03576 0.76 +0.6
998,142 - MPMX19_03576 0.76 -0.9
998,142 - MPMX19_03576 0.76 -0.2
998,222 + MPMX19_03576 0.83 +0.9
998,222 + MPMX19_03576 0.83 -0.5
998,222 + MPMX19_03576 0.83 -1.3
998,222 + MPMX19_03576 0.83 +0.6
998,222 + MPMX19_03576 0.83 +0.5
998,222 + MPMX19_03576 0.83 -1.3
998,222 + MPMX19_03576 0.83 +0.2
998,223 - MPMX19_03576 0.83 +1.2
998,223 - MPMX19_03576 0.83 -0.8
998,223 - MPMX19_03576 0.83 -0.4
998,223 - MPMX19_03576 0.83 +0.3
998,223 - MPMX19_03576 0.83 -0.2
998,223 - MPMX19_03576 0.83 -0.6
998,223 - MPMX19_03576 0.83 -0.3
998,223 - MPMX19_03576 0.83 +0.0
998,223 - MPMX19_03576 0.83 +0.2
998,354 + +0.2
998,355 - +0.4
998,423 + -1.0
998,736 + MPMX19_03577 0.28 -0.9
998,736 + MPMX19_03577 0.28 -0.1
998,736 + MPMX19_03577 0.28 +1.5
998,736 + MPMX19_03577 0.28 +1.0
998,737 - MPMX19_03577 0.28 -0.8
998,737 - MPMX19_03577 0.28 +0.6
998,737 - MPMX19_03577 0.28 +0.2
998,737 - MPMX19_03577 0.28 +0.3
998,737 - MPMX19_03577 0.28 -0.5
998,737 - MPMX19_03577 0.28 +0.7
998,737 - MPMX19_03577 0.28 +0.3
998,737 - MPMX19_03577 0.28 -1.6
998,737 - MPMX19_03577 0.28 -1.2
998,737 - MPMX19_03577 0.28 -0.5
998,737 - MPMX19_03577 0.28 -1.3
998,737 - MPMX19_03577 0.28 +0.1
998,737 - MPMX19_03577 0.28 +0.4
998,799 + MPMX19_03577 0.35 -0.2
998,799 + MPMX19_03577 0.35 -1.1
998,799 + MPMX19_03577 0.35 -1.3
998,800 - MPMX19_03577 0.35 -2.1
998,800 - MPMX19_03577 0.35 +0.8
998,800 - MPMX19_03577 0.35 -1.6
998,980 + MPMX19_03577 0.55 -0.5
998,980 + MPMX19_03577 0.55 +2.0
998,980 + MPMX19_03577 0.55 -1.1
998,980 + MPMX19_03577 0.55 +0.2
998,980 + MPMX19_03577 0.55 -0.9
998,981 - MPMX19_03577 0.55 -0.6
998,981 - MPMX19_03577 0.55 -0.3
999,177 + MPMX19_03577 0.77 +0.5
999,177 + MPMX19_03577 0.77 +0.3
999,177 + MPMX19_03577 0.77 -0.1
999,178 - MPMX19_03577 0.77 -0.1
999,178 - MPMX19_03577 0.77 +1.1
999,178 - MPMX19_03577 0.77 -1.1
999,178 - MPMX19_03577 0.77 -0.6
999,178 - MPMX19_03577 0.77 -0.7
999,178 - MPMX19_03577 0.77 -0.1
999,178 - MPMX19_03577 0.77 +0.4
999,178 - MPMX19_03577 0.77 -0.6
999,391 + -0.7
999,392 - +0.7
999,408 + -0.8
999,408 + -1.8
999,408 + +0.0
999,408 + -0.4
999,408 + +1.0
999,408 + +0.0
999,409 - +0.3
999,409 - +0.5
999,409 - -0.6
999,409 - -0.8

Or see this region's nucleotide sequence