Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03546

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03545 and MPMX19_03546 are separated by 107 nucleotidesMPMX19_03546 and MPMX19_03547 are separated by 160 nucleotidesMPMX19_03547 and MPMX19_03548 are separated by 62 nucleotides MPMX19_03545: MPMX19_03545 - Ectoine hydrolase, at 965,431 to 966,570 _03545 MPMX19_03546: MPMX19_03546 - Succinyl-diaminopimelate desuccinylase, at 966,678 to 968,225 _03546 MPMX19_03547: MPMX19_03547 - putative oxidoreductase, at 968,386 to 969,111 _03547 MPMX19_03548: MPMX19_03548 - Dihydroanticapsin 7-dehydrogenase, at 969,174 to 969,926 _03548 Position (kb) 966 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.774 kb on - strand, within MPMX19_03545at 966.163 kb on + strand, within MPMX19_03545at 966.163 kb on + strand, within MPMX19_03545at 966.164 kb on - strand, within MPMX19_03545at 966.164 kb on - strand, within MPMX19_03545at 966.346 kb on + strand, within MPMX19_03545at 966.364 kb on + strand, within MPMX19_03545at 966.364 kb on + strand, within MPMX19_03545at 966.379 kb on + strand, within MPMX19_03545at 966.380 kb on - strand, within MPMX19_03545at 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.625 kb on + strandat 966.626 kb on - strandat 966.723 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.755 kb on - strandat 966.755 kb on - strandat 966.880 kb on + strand, within MPMX19_03546at 966.880 kb on + strand, within MPMX19_03546at 966.880 kb on + strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.994 kb on + strand, within MPMX19_03546at 966.994 kb on + strand, within MPMX19_03546at 966.994 kb on + strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 967.039 kb on + strand, within MPMX19_03546at 967.040 kb on - strand, within MPMX19_03546at 967.040 kb on - strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.223 kb on - strand, within MPMX19_03546at 967.223 kb on - strand, within MPMX19_03546at 967.223 kb on - strand, within MPMX19_03546at 967.339 kb on + strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.342 kb on + strand, within MPMX19_03546at 967.343 kb on - strand, within MPMX19_03546at 967.343 kb on - strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.424 kb on - strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.778 kb on - strand, within MPMX19_03546at 967.778 kb on - strand, within MPMX19_03546at 967.778 kb on - strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 968.095 kb on + strandat 968.126 kb on + strandat 968.237 kb on + strandat 968.237 kb on + strandat 968.252 kb on + strandat 968.502 kb on - strand, within MPMX19_03547at 968.573 kb on + strand, within MPMX19_03547at 968.573 kb on + strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.654 kb on + strand, within MPMX19_03547at 968.654 kb on + strand, within MPMX19_03547at 968.655 kb on - strand, within MPMX19_03547at 968.655 kb on - strand, within MPMX19_03547at 968.655 kb on - strand, within MPMX19_03547at 968.711 kb on + strand, within MPMX19_03547at 968.711 kb on + strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 969.124 kb on + strandat 969.124 kb on + strandat 969.125 kb on - strandat 969.137 kb on - strandat 969.137 kb on - strandat 969.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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965,773 + MPMX19_03545 0.30 -1.5
965,773 + MPMX19_03545 0.30 -0.5
965,773 + MPMX19_03545 0.30 -0.1
965,773 + MPMX19_03545 0.30 +0.7
965,773 + MPMX19_03545 0.30 +0.9
965,774 - MPMX19_03545 0.30 +1.3
966,163 + MPMX19_03545 0.64 -0.9
966,163 + MPMX19_03545 0.64 +0.2
966,164 - MPMX19_03545 0.64 +0.2
966,164 - MPMX19_03545 0.64 -0.5
966,346 + MPMX19_03545 0.80 +0.9
966,364 + MPMX19_03545 0.82 -1.8
966,364 + MPMX19_03545 0.82 -1.3
966,379 + MPMX19_03545 0.83 -0.2
966,380 - MPMX19_03545 0.83 -2.1
966,469 + -1.1
966,469 + -1.0
966,469 + -1.3
966,469 + -0.6
966,469 + +0.3
966,469 + +0.1
966,469 + -1.1
966,469 + -0.5
966,469 + -0.0
966,469 + +2.0
966,469 + -0.6
966,469 + -0.9
966,469 + -0.1
966,469 + -1.1
966,469 + +0.4
966,469 + -0.1
966,469 + +0.4
966,469 + -0.7
966,469 + +0.3
966,470 - -0.3
966,470 - +2.9
966,470 - +0.1
966,470 - -0.9
966,470 - +0.2
966,470 - +0.4
966,470 - +0.4
966,470 - -0.3
966,470 - -0.6
966,470 - +1.5
966,470 - -0.7
966,470 - +0.1
966,470 - -0.2
966,470 - -1.3
966,470 - -1.8
966,470 - -0.3
966,470 - +1.0
966,470 - +2.0
966,470 - +0.1
966,470 - -1.1
966,625 + -0.3
966,626 - -0.2
966,723 + -1.1
966,754 + -0.3
966,754 + -1.2
966,754 + -0.8
966,754 + -0.2
966,754 + -0.8
966,754 + -0.6
966,755 - -0.2
966,755 - -0.9
966,880 + MPMX19_03546 0.13 -1.1
966,880 + MPMX19_03546 0.13 -0.8
966,880 + MPMX19_03546 0.13 -1.6
966,881 - MPMX19_03546 0.13 -1.8
966,881 - MPMX19_03546 0.13 -1.3
966,881 - MPMX19_03546 0.13 -1.2
966,881 - MPMX19_03546 0.13 -0.6
966,881 - MPMX19_03546 0.13 +0.2
966,881 - MPMX19_03546 0.13 -0.1
966,994 + MPMX19_03546 0.20 -1.6
966,994 + MPMX19_03546 0.20 -2.8
966,994 + MPMX19_03546 0.20 +1.5
966,995 - MPMX19_03546 0.20 -0.7
966,995 - MPMX19_03546 0.20 -1.6
966,995 - MPMX19_03546 0.20 -0.2
966,995 - MPMX19_03546 0.20 +0.5
966,995 - MPMX19_03546 0.20 -2.1
966,995 - MPMX19_03546 0.20 +0.5
966,995 - MPMX19_03546 0.20 +1.1
967,039 + MPMX19_03546 0.23 +0.0
967,040 - MPMX19_03546 0.23 -1.6
967,040 - MPMX19_03546 0.23 -1.1
967,222 + MPMX19_03546 0.35 -1.6
967,222 + MPMX19_03546 0.35 -0.4
967,222 + MPMX19_03546 0.35 -1.1
967,222 + MPMX19_03546 0.35 +0.4
967,222 + MPMX19_03546 0.35 -0.5
967,222 + MPMX19_03546 0.35 +0.4
967,222 + MPMX19_03546 0.35 -0.3
967,223 - MPMX19_03546 0.35 +0.9
967,223 - MPMX19_03546 0.35 -0.2
967,223 - MPMX19_03546 0.35 -1.6
967,339 + MPMX19_03546 0.43 -0.7
967,340 - MPMX19_03546 0.43 -0.2
967,340 - MPMX19_03546 0.43 -1.5
967,340 - MPMX19_03546 0.43 +0.5
967,340 - MPMX19_03546 0.43 -1.1
967,340 - MPMX19_03546 0.43 -1.2
967,340 - MPMX19_03546 0.43 -1.2
967,342 + MPMX19_03546 0.43 -2.2
967,343 - MPMX19_03546 0.43 -1.5
967,343 - MPMX19_03546 0.43 +0.5
967,423 + MPMX19_03546 0.48 -0.6
967,423 + MPMX19_03546 0.48 +0.3
967,423 + MPMX19_03546 0.48 -0.7
967,423 + MPMX19_03546 0.48 +0.3
967,423 + MPMX19_03546 0.48 -0.5
967,423 + MPMX19_03546 0.48 +0.1
967,423 + MPMX19_03546 0.48 -0.9
967,423 + MPMX19_03546 0.48 +0.5
967,424 - MPMX19_03546 0.48 -0.8
967,777 + MPMX19_03546 0.71 -0.2
967,777 + MPMX19_03546 0.71 -0.9
967,777 + MPMX19_03546 0.71 -1.5
967,777 + MPMX19_03546 0.71 -1.5
967,777 + MPMX19_03546 0.71 -0.9
967,778 - MPMX19_03546 0.71 +1.2
967,778 - MPMX19_03546 0.71 -0.1
967,778 - MPMX19_03546 0.71 -1.5
967,900 + MPMX19_03546 0.79 +0.5
967,900 + MPMX19_03546 0.79 +0.8
967,900 + MPMX19_03546 0.79 -0.1
967,900 + MPMX19_03546 0.79 -2.9
967,900 + MPMX19_03546 0.79 -0.2
967,900 + MPMX19_03546 0.79 +1.1
967,900 + MPMX19_03546 0.79 -1.0
967,900 + MPMX19_03546 0.79 -0.9
967,900 + MPMX19_03546 0.79 -0.5
967,900 + MPMX19_03546 0.79 +0.6
967,901 - MPMX19_03546 0.79 +0.1
967,901 - MPMX19_03546 0.79 -0.2
967,901 - MPMX19_03546 0.79 +2.8
967,901 - MPMX19_03546 0.79 +0.6
967,901 - MPMX19_03546 0.79 -0.9
968,095 + -1.3
968,126 + -0.4
968,237 + +0.0
968,237 + -0.9
968,252 + -0.1
968,502 - MPMX19_03547 0.16 -1.2
968,573 + MPMX19_03547 0.26 +0.1
968,573 + MPMX19_03547 0.26 +0.7
968,574 - MPMX19_03547 0.26 +0.9
968,574 - MPMX19_03547 0.26 +0.5
968,574 - MPMX19_03547 0.26 -0.5
968,574 - MPMX19_03547 0.26 -0.8
968,654 + MPMX19_03547 0.37 -0.5
968,654 + MPMX19_03547 0.37 -1.3
968,655 - MPMX19_03547 0.37 +0.7
968,655 - MPMX19_03547 0.37 -1.2
968,655 - MPMX19_03547 0.37 +0.9
968,711 + MPMX19_03547 0.45 +0.4
968,711 + MPMX19_03547 0.45 +0.5
968,712 - MPMX19_03547 0.45 -1.5
968,712 - MPMX19_03547 0.45 -1.5
968,712 - MPMX19_03547 0.45 -0.3
968,712 - MPMX19_03547 0.45 +1.1
968,712 - MPMX19_03547 0.45 -0.8
969,124 + -0.7
969,124 + -0.9
969,125 - -0.1
969,137 - -1.0
969,137 - +0.7
969,188 - -0.1

Or see this region's nucleotide sequence