Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03530

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03529 and MPMX19_03530 are separated by 122 nucleotidesMPMX19_03530 and MPMX19_03531 are separated by 31 nucleotides MPMX19_03529: MPMX19_03529 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 948,717 to 949,736 _03529 MPMX19_03530: MPMX19_03530 - HTH-type transcriptional repressor NicS, at 949,859 to 950,536 _03530 MPMX19_03531: MPMX19_03531 - PCP degradation transcriptional activation protein, at 950,568 to 951,506 _03531 Position (kb) 949 950 951Strain fitness (log2 ratio) -2 -1 0 1 2at 948.967 kb on + strand, within MPMX19_03529at 948.967 kb on + strand, within MPMX19_03529at 948.967 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.317 kb on + strand, within MPMX19_03529at 949.317 kb on + strand, within MPMX19_03529at 949.318 kb on - strand, within MPMX19_03529at 949.318 kb on - strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.405 kb on - strand, within MPMX19_03529at 949.428 kb on + strand, within MPMX19_03529at 949.429 kb on - strand, within MPMX19_03529at 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.701 kb on + strandat 949.702 kb on - strandat 949.702 kb on - strandat 949.811 kb on + strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.043 kb on - strand, within MPMX19_03530at 950.043 kb on - strand, within MPMX19_03530at 950.045 kb on + strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.186 kb on + strand, within MPMX19_03530at 950.186 kb on + strand, within MPMX19_03530at 950.815 kb on + strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 951.209 kb on + strand, within MPMX19_03531at 951.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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948,967 + MPMX19_03529 0.25 -0.5
948,967 + MPMX19_03529 0.25 -1.3
948,967 + MPMX19_03529 0.25 -0.1
949,257 + MPMX19_03529 0.53 -2.3
949,257 + MPMX19_03529 0.53 -0.2
949,257 + MPMX19_03529 0.53 +0.8
949,257 + MPMX19_03529 0.53 -0.3
949,258 - MPMX19_03529 0.53 -2.1
949,258 - MPMX19_03529 0.53 +0.9
949,258 - MPMX19_03529 0.53 +1.8
949,258 - MPMX19_03529 0.53 -1.9
949,258 - MPMX19_03529 0.53 -0.4
949,258 - MPMX19_03529 0.53 -0.3
949,258 - MPMX19_03529 0.53 -1.3
949,317 + MPMX19_03529 0.59 +0.2
949,317 + MPMX19_03529 0.59 -0.4
949,318 - MPMX19_03529 0.59 -1.5
949,318 - MPMX19_03529 0.59 -1.5
949,404 + MPMX19_03529 0.67 -1.9
949,404 + MPMX19_03529 0.67 -0.1
949,404 + MPMX19_03529 0.67 +0.4
949,405 - MPMX19_03529 0.67 -1.3
949,428 + MPMX19_03529 0.70 +0.9
949,429 - MPMX19_03529 0.70 +0.8
949,662 + -0.5
949,662 + +0.1
949,662 + +0.2
949,662 + +0.8
949,662 + -0.4
949,662 + +0.4
949,662 + -0.5
949,663 - -0.9
949,663 - +0.5
949,663 - -1.3
949,663 - -0.3
949,663 - -1.0
949,701 + +0.8
949,702 - +0.9
949,702 - +0.5
949,811 + -1.2
949,812 - -2.5
949,812 - -0.2
949,812 - +0.4
949,812 - -0.8
949,812 - -0.7
950,039 + MPMX19_03530 0.27 -0.7
950,039 + MPMX19_03530 0.27 -0.1
950,039 + MPMX19_03530 0.27 -0.2
950,039 + MPMX19_03530 0.27 -0.2
950,039 + MPMX19_03530 0.27 +0.0
950,039 + MPMX19_03530 0.27 +0.3
950,039 + MPMX19_03530 0.27 +0.3
950,039 + MPMX19_03530 0.27 +0.1
950,039 + MPMX19_03530 0.27 +0.1
950,039 + MPMX19_03530 0.27 +0.8
950,040 - MPMX19_03530 0.27 +0.9
950,040 - MPMX19_03530 0.27 -0.5
950,040 - MPMX19_03530 0.27 +0.5
950,040 - MPMX19_03530 0.27 -0.0
950,040 - MPMX19_03530 0.27 +0.5
950,040 - MPMX19_03530 0.27 +0.4
950,040 - MPMX19_03530 0.27 +1.2
950,040 - MPMX19_03530 0.27 +0.3
950,040 - MPMX19_03530 0.27 +0.3
950,043 - MPMX19_03530 0.27 -1.2
950,043 - MPMX19_03530 0.27 +0.1
950,045 + MPMX19_03530 0.27 -0.2
950,046 - MPMX19_03530 0.28 -0.8
950,046 - MPMX19_03530 0.28 -0.3
950,046 - MPMX19_03530 0.28 +0.5
950,069 + MPMX19_03530 0.31 +0.0
950,069 + MPMX19_03530 0.31 -1.8
950,069 + MPMX19_03530 0.31 +1.3
950,069 + MPMX19_03530 0.31 -0.8
950,069 + MPMX19_03530 0.31 +0.1
950,069 + MPMX19_03530 0.31 +0.2
950,069 + MPMX19_03530 0.31 -0.2
950,069 + MPMX19_03530 0.31 +1.1
950,069 + MPMX19_03530 0.31 -1.3
950,070 - MPMX19_03530 0.31 -0.4
950,070 - MPMX19_03530 0.31 -0.5
950,070 - MPMX19_03530 0.31 +1.2
950,070 - MPMX19_03530 0.31 +1.0
950,070 - MPMX19_03530 0.31 -1.0
950,070 - MPMX19_03530 0.31 +0.7
950,070 - MPMX19_03530 0.31 -1.1
950,070 - MPMX19_03530 0.31 -0.6
950,093 + MPMX19_03530 0.35 -1.1
950,093 + MPMX19_03530 0.35 -0.0
950,093 + MPMX19_03530 0.35 +1.8
950,093 + MPMX19_03530 0.35 -0.8
950,093 + MPMX19_03530 0.35 -0.2
950,093 + MPMX19_03530 0.35 -0.1
950,094 - MPMX19_03530 0.35 -0.5
950,094 - MPMX19_03530 0.35 -0.2
950,094 - MPMX19_03530 0.35 +1.0
950,094 - MPMX19_03530 0.35 -0.2
950,094 - MPMX19_03530 0.35 -0.4
950,094 - MPMX19_03530 0.35 -1.5
950,094 - MPMX19_03530 0.35 -0.9
950,094 - MPMX19_03530 0.35 +0.6
950,186 + MPMX19_03530 0.48 +0.0
950,186 + MPMX19_03530 0.48 -0.1
950,815 + MPMX19_03531 0.26 +1.5
950,816 - MPMX19_03531 0.26 -1.2
950,816 - MPMX19_03531 0.26 -0.5
950,816 - MPMX19_03531 0.26 -0.3
950,816 - MPMX19_03531 0.26 -0.3
950,887 + MPMX19_03531 0.34 +0.4
950,887 + MPMX19_03531 0.34 -0.8
950,887 + MPMX19_03531 0.34 -0.5
950,887 + MPMX19_03531 0.34 -0.2
950,888 - MPMX19_03531 0.34 +1.2
950,888 - MPMX19_03531 0.34 -1.5
950,888 - MPMX19_03531 0.34 -0.3
950,888 - MPMX19_03531 0.34 -0.8
951,209 + MPMX19_03531 0.68 +0.1
951,525 + -0.1

Or see this region's nucleotide sequence