Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03517

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03516 and MPMX19_03517 are separated by 547 nucleotidesMPMX19_03517 and MPMX19_03518 are separated by 67 nucleotides MPMX19_03516: MPMX19_03516 - Hydrogenase-4 component A, at 934,098 to 934,691 _03516 MPMX19_03517: MPMX19_03517 - Hydrogenase-4 component A, at 935,239 to 935,781 _03517 MPMX19_03518: MPMX19_03518 - Formate dehydrogenase H, at 935,849 to 938,020 _03518 Position (kb) 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 934.691 kb on + strandat 934.919 kb on - strandat 935.051 kb on + strandat 935.467 kb on + strand, within MPMX19_03517at 935.468 kb on - strand, within MPMX19_03517at 935.860 kb on + strandat 935.860 kb on + strandat 935.860 kb on + strandat 935.860 kb on + strandat 935.860 kb on + strandat 935.860 kb on + strandat 935.861 kb on - strandat 935.876 kb on + strandat 935.877 kb on - strandat 935.984 kb on + strandat 935.985 kb on - strandat 935.985 kb on - strandat 935.985 kb on - strandat 935.994 kb on - strandat 936.105 kb on - strand, within MPMX19_03518at 936.140 kb on + strand, within MPMX19_03518at 936.140 kb on + strand, within MPMX19_03518at 936.141 kb on - strand, within MPMX19_03518at 936.141 kb on - strand, within MPMX19_03518at 936.141 kb on - strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.200 kb on + strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.201 kb on - strand, within MPMX19_03518at 936.372 kb on - strand, within MPMX19_03518at 936.372 kb on - strand, within MPMX19_03518at 936.372 kb on - strand, within MPMX19_03518at 936.372 kb on - strand, within MPMX19_03518at 936.372 kb on - strand, within MPMX19_03518at 936.566 kb on + strand, within MPMX19_03518at 936.567 kb on - strand, within MPMX19_03518at 936.567 kb on - strand, within MPMX19_03518at 936.567 kb on - strand, within MPMX19_03518at 936.578 kb on + strand, within MPMX19_03518at 936.578 kb on + strand, within MPMX19_03518at 936.578 kb on + strand, within MPMX19_03518at 936.579 kb on - strand, within MPMX19_03518at 936.579 kb on - strand, within MPMX19_03518at 936.579 kb on - strand, within MPMX19_03518at 936.612 kb on - strand, within MPMX19_03518at 936.612 kb on - strand, within MPMX19_03518at 936.612 kb on - strand, within MPMX19_03518at 936.632 kb on + strand, within MPMX19_03518at 936.632 kb on + strand, within MPMX19_03518at 936.632 kb on + strand, within MPMX19_03518at 936.633 kb on - strand, within MPMX19_03518at 936.633 kb on - strand, within MPMX19_03518at 936.633 kb on - strand, within MPMX19_03518at 936.633 kb on - strand, within MPMX19_03518at 936.633 kb on - strand, within MPMX19_03518at 936.633 kb on - strand, within MPMX19_03518at 936.633 kb on - strand, within MPMX19_03518at 936.644 kb on + strand, within MPMX19_03518at 936.701 kb on + strand, within MPMX19_03518at 936.701 kb on + strand, within MPMX19_03518at 936.702 kb on - strand, within MPMX19_03518at 936.702 kb on - strand, within MPMX19_03518

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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934,691 + -1.5
934,919 - -1.0
935,051 + -2.8
935,467 + MPMX19_03517 0.42 +0.1
935,468 - MPMX19_03517 0.42 -0.5
935,860 + +0.3
935,860 + +1.1
935,860 + -0.3
935,860 + -1.7
935,860 + -0.8
935,860 + -0.1
935,861 - -0.5
935,876 + -0.2
935,877 - +0.3
935,984 + -0.7
935,985 - -1.7
935,985 - -0.7
935,985 - +0.6
935,994 - -1.1
936,105 - MPMX19_03518 0.12 +0.2
936,140 + MPMX19_03518 0.13 -1.1
936,140 + MPMX19_03518 0.13 +0.9
936,141 - MPMX19_03518 0.13 -0.3
936,141 - MPMX19_03518 0.13 +1.1
936,141 - MPMX19_03518 0.13 +0.0
936,200 + MPMX19_03518 0.16 -0.9
936,200 + MPMX19_03518 0.16 -1.3
936,200 + MPMX19_03518 0.16 +0.0
936,200 + MPMX19_03518 0.16 -1.3
936,200 + MPMX19_03518 0.16 -0.5
936,200 + MPMX19_03518 0.16 -1.2
936,200 + MPMX19_03518 0.16 +0.6
936,200 + MPMX19_03518 0.16 -0.1
936,200 + MPMX19_03518 0.16 -0.4
936,200 + MPMX19_03518 0.16 -0.1
936,200 + MPMX19_03518 0.16 +1.5
936,200 + MPMX19_03518 0.16 -1.1
936,200 + MPMX19_03518 0.16 +1.0
936,200 + MPMX19_03518 0.16 -0.5
936,200 + MPMX19_03518 0.16 -0.5
936,200 + MPMX19_03518 0.16 -0.8
936,200 + MPMX19_03518 0.16 +0.7
936,200 + MPMX19_03518 0.16 -0.0
936,200 + MPMX19_03518 0.16 -0.4
936,201 - MPMX19_03518 0.16 +0.6
936,201 - MPMX19_03518 0.16 -0.2
936,201 - MPMX19_03518 0.16 +0.8
936,201 - MPMX19_03518 0.16 -0.1
936,201 - MPMX19_03518 0.16 +0.6
936,201 - MPMX19_03518 0.16 +0.3
936,201 - MPMX19_03518 0.16 +1.5
936,201 - MPMX19_03518 0.16 +0.7
936,201 - MPMX19_03518 0.16 -0.8
936,201 - MPMX19_03518 0.16 +0.5
936,201 - MPMX19_03518 0.16 -0.0
936,201 - MPMX19_03518 0.16 -0.1
936,201 - MPMX19_03518 0.16 -1.0
936,201 - MPMX19_03518 0.16 +0.5
936,201 - MPMX19_03518 0.16 -0.5
936,201 - MPMX19_03518 0.16 +0.5
936,201 - MPMX19_03518 0.16 -0.2
936,201 - MPMX19_03518 0.16 +0.5
936,201 - MPMX19_03518 0.16 +0.5
936,201 - MPMX19_03518 0.16 -1.0
936,201 - MPMX19_03518 0.16 +0.7
936,201 - MPMX19_03518 0.16 -0.3
936,201 - MPMX19_03518 0.16 +0.4
936,372 - MPMX19_03518 0.24 +0.5
936,372 - MPMX19_03518 0.24 +0.3
936,372 - MPMX19_03518 0.24 +1.4
936,372 - MPMX19_03518 0.24 +0.1
936,372 - MPMX19_03518 0.24 -0.7
936,566 + MPMX19_03518 0.33 -0.4
936,567 - MPMX19_03518 0.33 +0.6
936,567 - MPMX19_03518 0.33 +0.2
936,567 - MPMX19_03518 0.33 -0.6
936,578 + MPMX19_03518 0.34 -1.5
936,578 + MPMX19_03518 0.34 -0.9
936,578 + MPMX19_03518 0.34 -0.1
936,579 - MPMX19_03518 0.34 -0.5
936,579 - MPMX19_03518 0.34 +0.3
936,579 - MPMX19_03518 0.34 -0.8
936,612 - MPMX19_03518 0.35 +0.2
936,612 - MPMX19_03518 0.35 -0.7
936,612 - MPMX19_03518 0.35 +1.0
936,632 + MPMX19_03518 0.36 +0.1
936,632 + MPMX19_03518 0.36 -0.3
936,632 + MPMX19_03518 0.36 +0.6
936,633 - MPMX19_03518 0.36 +0.5
936,633 - MPMX19_03518 0.36 -1.4
936,633 - MPMX19_03518 0.36 -0.8
936,633 - MPMX19_03518 0.36 -0.1
936,633 - MPMX19_03518 0.36 -0.1
936,633 - MPMX19_03518 0.36 -0.9
936,633 - MPMX19_03518 0.36 -0.9
936,644 + MPMX19_03518 0.37 +0.2
936,701 + MPMX19_03518 0.39 -1.3
936,701 + MPMX19_03518 0.39 +0.0
936,702 - MPMX19_03518 0.39 +0.1
936,702 - MPMX19_03518 0.39 +1.9

Or see this region's nucleotide sequence