Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03504

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03502 and MPMX19_03503 are separated by 23 nucleotidesMPMX19_03503 and MPMX19_03504 are separated by 483 nucleotidesMPMX19_03504 and MPMX19_03505 are separated by 71 nucleotides MPMX19_03502: MPMX19_03502 - Hydrogenase maturation factor HybG, at 920,371 to 920,652 _03502 MPMX19_03503: MPMX19_03503 - Hydrogenase maturation factor HybF, at 920,676 to 921,017 _03503 MPMX19_03504: MPMX19_03504 - Sulfur carrier protein FdhD, at 921,501 to 922,283 _03504 MPMX19_03505: MPMX19_03505 - putative formate transporter 1, at 922,355 to 923,263 _03505 Position (kb) 921 922 923Strain fitness (log2 ratio) -2 -1 0 1 2at 920.855 kb on + strand, within MPMX19_03503at 920.856 kb on - strand, within MPMX19_03503at 920.856 kb on - strand, within MPMX19_03503at 921.046 kb on + strandat 921.152 kb on - strandat 921.337 kb on + strandat 921.338 kb on - strandat 921.414 kb on - strandat 921.437 kb on + strandat 921.437 kb on + strandat 921.437 kb on + strandat 921.438 kb on - strandat 921.438 kb on - strandat 921.582 kb on + strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 922.248 kb on + strandat 922.248 kb on + strandat 922.249 kb on - strandat 922.249 kb on - strandat 922.249 kb on - strandat 922.249 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.437 kb on + strandat 922.438 kb on - strandat 922.438 kb on - strandat 922.438 kb on - strandat 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.603 kb on - strand, within MPMX19_03505at 922.698 kb on + strand, within MPMX19_03505at 922.709 kb on + strand, within MPMX19_03505at 922.846 kb on + strand, within MPMX19_03505at 922.846 kb on + strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 923.214 kb on + strandat 923.214 kb on + strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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920,855 + MPMX19_03503 0.52 -0.3
920,856 - MPMX19_03503 0.53 -0.1
920,856 - MPMX19_03503 0.53 -1.7
921,046 + -1.6
921,152 - -1.8
921,337 + +0.3
921,338 - -1.4
921,414 - -0.7
921,437 + +2.5
921,437 + -0.1
921,437 + +0.1
921,438 - -0.3
921,438 - -0.0
921,582 + MPMX19_03504 0.10 -0.8
921,583 - MPMX19_03504 0.10 -1.7
921,583 - MPMX19_03504 0.10 +0.1
921,583 - MPMX19_03504 0.10 -0.4
921,583 - MPMX19_03504 0.10 -1.5
921,583 - MPMX19_03504 0.10 -1.5
921,583 - MPMX19_03504 0.10 -1.8
922,248 + +0.1
922,248 + -0.2
922,249 - -0.9
922,249 - +2.0
922,249 - -0.3
922,249 - -0.1
922,333 - -0.3
922,333 - -2.2
922,333 - -0.2
922,333 - -1.1
922,437 + -0.9
922,438 - -0.1
922,438 - +0.2
922,438 - -0.3
922,449 + MPMX19_03505 0.10 +1.5
922,449 + MPMX19_03505 0.10 -0.4
922,449 + MPMX19_03505 0.10 -0.3
922,449 + MPMX19_03505 0.10 +0.1
922,449 + MPMX19_03505 0.10 +0.5
922,449 + MPMX19_03505 0.10 +1.0
922,450 - MPMX19_03505 0.10 -1.1
922,450 - MPMX19_03505 0.10 -0.4
922,450 - MPMX19_03505 0.10 +0.2
922,450 - MPMX19_03505 0.10 -2.2
922,450 - MPMX19_03505 0.10 -1.3
922,450 - MPMX19_03505 0.10 +1.2
922,450 - MPMX19_03505 0.10 -2.6
922,450 - MPMX19_03505 0.10 +0.9
922,450 - MPMX19_03505 0.10 -0.1
922,450 - MPMX19_03505 0.10 -0.2
922,450 - MPMX19_03505 0.10 +0.3
922,450 - MPMX19_03505 0.10 +0.9
922,584 + MPMX19_03505 0.25 +1.3
922,584 + MPMX19_03505 0.25 -0.2
922,584 + MPMX19_03505 0.25 -0.5
922,584 + MPMX19_03505 0.25 -1.3
922,584 + MPMX19_03505 0.25 +0.3
922,584 + MPMX19_03505 0.25 -0.1
922,584 + MPMX19_03505 0.25 +0.1
922,584 + MPMX19_03505 0.25 -2.1
922,585 - MPMX19_03505 0.25 +0.7
922,585 - MPMX19_03505 0.25 +0.3
922,585 - MPMX19_03505 0.25 -0.7
922,602 + MPMX19_03505 0.27 -0.8
922,602 + MPMX19_03505 0.27 +1.1
922,602 + MPMX19_03505 0.27 -0.4
922,603 - MPMX19_03505 0.27 -0.5
922,698 + MPMX19_03505 0.38 -0.3
922,709 + MPMX19_03505 0.39 -0.1
922,846 + MPMX19_03505 0.54 +2.7
922,846 + MPMX19_03505 0.54 +0.3
922,847 - MPMX19_03505 0.54 -1.5
922,847 - MPMX19_03505 0.54 -0.9
922,847 - MPMX19_03505 0.54 +1.5
922,848 + MPMX19_03505 0.54 -0.9
922,848 + MPMX19_03505 0.54 +0.5
922,848 + MPMX19_03505 0.54 -0.7
922,848 + MPMX19_03505 0.54 -1.0
922,848 + MPMX19_03505 0.54 -0.8
922,848 + MPMX19_03505 0.54 +0.2
922,848 + MPMX19_03505 0.54 +0.4
922,848 + MPMX19_03505 0.54 +0.8
922,848 + MPMX19_03505 0.54 +0.7
922,848 + MPMX19_03505 0.54 -1.8
922,848 + MPMX19_03505 0.54 -1.0
922,848 + MPMX19_03505 0.54 +0.1
922,848 + MPMX19_03505 0.54 +2.3
922,848 + MPMX19_03505 0.54 +0.3
922,848 + MPMX19_03505 0.54 +0.7
922,848 + MPMX19_03505 0.54 -0.1
922,848 + MPMX19_03505 0.54 +1.7
922,849 - MPMX19_03505 0.54 -0.6
922,849 - MPMX19_03505 0.54 -1.5
922,849 - MPMX19_03505 0.54 +0.7
922,849 - MPMX19_03505 0.54 -1.5
922,849 - MPMX19_03505 0.54 -1.2
922,849 - MPMX19_03505 0.54 -0.0
922,849 - MPMX19_03505 0.54 -1.4
922,849 - MPMX19_03505 0.54 -1.9
922,849 - MPMX19_03505 0.54 -0.4
922,849 - MPMX19_03505 0.54 -0.8
922,849 - MPMX19_03505 0.54 -1.7
922,849 - MPMX19_03505 0.54 -0.3
922,849 - MPMX19_03505 0.54 -0.7
922,849 - MPMX19_03505 0.54 -1.7
922,849 - MPMX19_03505 0.54 -0.4
922,849 - MPMX19_03505 0.54 +0.1
922,849 - MPMX19_03505 0.54 +0.1
922,849 - MPMX19_03505 0.54 +1.0
922,849 - MPMX19_03505 0.54 -1.2
922,849 - MPMX19_03505 0.54 -1.3
922,849 - MPMX19_03505 0.54 -0.7
922,849 - MPMX19_03505 0.54 -1.1
922,849 - MPMX19_03505 0.54 -0.7
922,849 - MPMX19_03505 0.54 +0.3
923,214 + -0.5
923,214 + -0.1
923,215 - +1.1
923,215 - -0.1
923,215 - +0.3
923,215 - +0.6

Or see this region's nucleotide sequence