Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03478 and MPMX19_03479 are separated by 97 nucleotides MPMX19_03479 and MPMX19_03480 are separated by 142 nucleotides MPMX19_03480 and MPMX19_03481 are separated by 53 nucleotides
MPMX19_03478: MPMX19_03478 - Glutamine-dependent NAD(+) synthetase, at 889,465 to 891,174
_03478
MPMX19_03479: MPMX19_03479 - Bifunctional NMN adenylyltransferase/Nudix hydrolase, at 891,272 to 892,405
_03479
MPMX19_03480: MPMX19_03480 - hypothetical protein, at 892,548 to 892,889
_03480
MPMX19_03481: MPMX19_03481 - hypothetical protein, at 892,943 to 893,512
_03481
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 890.315 kb on + strand, within MPMX19_03478 at 890.315 kb on + strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.345 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.558 kb on + strand, within MPMX19_03478 at 890.558 kb on + strand, within MPMX19_03478 at 890.558 kb on + strand, within MPMX19_03478 at 890.559 kb on - strand, within MPMX19_03478 at 890.559 kb on - strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.735 kb on + strand, within MPMX19_03479 at 891.735 kb on + strand, within MPMX19_03479 at 891.735 kb on + strand, within MPMX19_03479 at 891.736 kb on - strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.748 kb on - strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.871 kb on - strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.952 kb on - strand, within MPMX19_03479 at 891.952 kb on - strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 892.084 kb on - strand, within MPMX19_03479 at 892.084 kb on - strand, within MPMX19_03479 at 892.442 kb on + strand at 892.462 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.550 kb on - strand at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.593 kb on - strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 893.184 kb on + strand, within MPMX19_03481 at 893.184 kb on + strand, within MPMX19_03481 at 893.184 kb on + strand, within MPMX19_03481 at 893.184 kb on + strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.236 kb on - strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 890,315 + MPMX19_03478 0.50 +0.7 890,315 + MPMX19_03478 0.50 -1.0 890,316 - MPMX19_03478 0.50 +0.3 890,316 - MPMX19_03478 0.50 +0.9 890,316 - MPMX19_03478 0.50 +0.3 890,316 - MPMX19_03478 0.50 +0.3 890,316 - MPMX19_03478 0.50 -1.7 890,345 + MPMX19_03478 0.51 -1.7 890,507 + MPMX19_03478 0.61 -2.1 890,507 + MPMX19_03478 0.61 +0.6 890,507 + MPMX19_03478 0.61 +0.8 890,507 + MPMX19_03478 0.61 +1.2 890,507 + MPMX19_03478 0.61 -1.4 890,507 + MPMX19_03478 0.61 +0.4 890,507 + MPMX19_03478 0.61 -0.5 890,508 - MPMX19_03478 0.61 +0.6 890,508 - MPMX19_03478 0.61 +1.0 890,508 - MPMX19_03478 0.61 +0.1 890,508 - MPMX19_03478 0.61 -2.0 890,508 - MPMX19_03478 0.61 -2.1 890,508 - MPMX19_03478 0.61 -2.4 890,558 + MPMX19_03478 0.64 -1.5 890,558 + MPMX19_03478 0.64 -0.2 890,558 + MPMX19_03478 0.64 -1.3 890,559 - MPMX19_03478 0.64 -1.3 890,559 - MPMX19_03478 0.64 -0.3 890,798 + MPMX19_03478 0.78 -1.2 890,798 + MPMX19_03478 0.78 +0.2 890,798 + MPMX19_03478 0.78 -0.8 890,798 + MPMX19_03478 0.78 -0.1 890,798 + MPMX19_03478 0.78 -0.7 890,798 + MPMX19_03478 0.78 +0.1 890,799 - MPMX19_03478 0.78 -2.1 890,799 - MPMX19_03478 0.78 +0.8 890,799 - MPMX19_03478 0.78 +0.9 890,799 - MPMX19_03478 0.78 -2.9 890,799 - MPMX19_03478 0.78 +0.2 890,876 + MPMX19_03478 0.83 +0.9 890,876 + MPMX19_03478 0.83 -0.5 890,876 + MPMX19_03478 0.83 -0.9 890,876 + MPMX19_03478 0.83 -1.0 890,876 + MPMX19_03478 0.83 +0.4 890,876 + MPMX19_03478 0.83 -0.3 890,877 - MPMX19_03478 0.83 -1.2 890,877 - MPMX19_03478 0.83 +1.1 890,877 - MPMX19_03478 0.83 -0.6 890,877 - MPMX19_03478 0.83 -1.7 891,162 + +1.1 891,162 + -0.9 891,162 + -0.8 891,162 + -0.6 891,162 + +0.3 891,162 + -0.5 891,162 + -0.3 891,162 + +0.2 891,162 + +2.4 891,162 + -0.6 891,162 + -0.1 891,162 + +0.8 891,163 - -0.1 891,163 - +1.1 891,163 - -1.1 891,163 - -0.2 891,163 - -0.5 891,163 - -0.7 891,312 + -1.9 891,312 + -0.2 891,312 + -0.7 891,312 + -1.1 891,312 + +0.5 891,735 + MPMX19_03479 0.41 +1.5 891,735 + MPMX19_03479 0.41 +0.5 891,735 + MPMX19_03479 0.41 -0.4 891,736 - MPMX19_03479 0.41 +0.5 891,747 + MPMX19_03479 0.42 +0.2 891,747 + MPMX19_03479 0.42 -0.5 891,747 + MPMX19_03479 0.42 -0.1 891,747 + MPMX19_03479 0.42 -0.3 891,747 + MPMX19_03479 0.42 +0.8 891,747 + MPMX19_03479 0.42 -0.7 891,747 + MPMX19_03479 0.42 -0.6 891,748 - MPMX19_03479 0.42 -0.2 891,774 + MPMX19_03479 0.44 -0.8 891,774 + MPMX19_03479 0.44 -0.4 891,774 + MPMX19_03479 0.44 +0.2 891,774 + MPMX19_03479 0.44 -1.3 891,870 + MPMX19_03479 0.53 -0.1 891,870 + MPMX19_03479 0.53 +0.5 891,870 + MPMX19_03479 0.53 -0.3 891,870 + MPMX19_03479 0.53 +0.3 891,870 + MPMX19_03479 0.53 -0.2 891,870 + MPMX19_03479 0.53 -0.7 891,871 - MPMX19_03479 0.53 -0.3 891,951 + MPMX19_03479 0.60 -0.0 891,951 + MPMX19_03479 0.60 +0.6 891,951 + MPMX19_03479 0.60 -0.6 891,951 + MPMX19_03479 0.60 +0.9 891,951 + MPMX19_03479 0.60 +0.5 891,951 + MPMX19_03479 0.60 -0.4 891,952 - MPMX19_03479 0.60 -2.1 891,952 - MPMX19_03479 0.60 +0.5 891,954 + MPMX19_03479 0.60 +0.1 891,954 + MPMX19_03479 0.60 +0.4 891,954 + MPMX19_03479 0.60 -0.2 891,954 + MPMX19_03479 0.60 -1.2 891,954 + MPMX19_03479 0.60 -0.5 891,955 - MPMX19_03479 0.60 -0.9 891,955 - MPMX19_03479 0.60 +0.3 891,955 - MPMX19_03479 0.60 -0.1 891,955 - MPMX19_03479 0.60 -0.5 891,955 - MPMX19_03479 0.60 -1.5 891,955 - MPMX19_03479 0.60 -0.1 891,955 - MPMX19_03479 0.60 +0.5 891,955 - MPMX19_03479 0.60 +0.3 891,955 - MPMX19_03479 0.60 -0.7 891,955 - MPMX19_03479 0.60 +0.7 892,084 - MPMX19_03479 0.72 -0.1 892,084 - MPMX19_03479 0.72 +0.9 892,442 + -1.7 892,462 + -1.5 892,549 + -0.3 892,549 + -2.2 892,549 + +0.2 892,550 - +0.1 892,591 + MPMX19_03480 0.13 -0.5 892,591 + MPMX19_03480 0.13 -0.2 892,591 + MPMX19_03480 0.13 -1.4 892,591 + MPMX19_03480 0.13 +0.7 892,591 + MPMX19_03480 0.13 -1.3 892,591 + MPMX19_03480 0.13 +0.5 892,592 - MPMX19_03480 0.13 -0.8 892,592 - MPMX19_03480 0.13 +0.1 892,592 - MPMX19_03480 0.13 -1.8 892,592 - MPMX19_03480 0.13 -0.8 892,592 - MPMX19_03480 0.13 +0.3 892,592 - MPMX19_03480 0.13 +2.1 892,592 - MPMX19_03480 0.13 -0.0 892,593 - MPMX19_03480 0.13 -1.7 892,846 + MPMX19_03480 0.87 +1.1 892,846 + MPMX19_03480 0.87 -0.7 892,846 + MPMX19_03480 0.87 -0.7 892,846 + MPMX19_03480 0.87 +0.4 892,846 + MPMX19_03480 0.87 +0.5 892,847 - MPMX19_03480 0.87 -0.8 892,847 - MPMX19_03480 0.87 +0.3 892,847 - MPMX19_03480 0.87 +0.7 892,847 - MPMX19_03480 0.87 -0.2 892,847 - MPMX19_03480 0.87 +0.8 892,847 - MPMX19_03480 0.87 +0.4 892,847 - MPMX19_03480 0.87 -2.7 893,184 + MPMX19_03481 0.42 -0.1 893,184 + MPMX19_03481 0.42 +0.2 893,184 + MPMX19_03481 0.42 +0.1 893,184 + MPMX19_03481 0.42 -1.4 893,185 - MPMX19_03481 0.42 +1.3 893,185 - MPMX19_03481 0.42 -1.2 893,185 - MPMX19_03481 0.42 +0.1 893,185 - MPMX19_03481 0.42 -0.5 893,185 - MPMX19_03481 0.42 -1.8 893,185 - MPMX19_03481 0.42 +0.5 893,185 - MPMX19_03481 0.42 -0.1 893,185 - MPMX19_03481 0.42 -0.3 893,235 + MPMX19_03481 0.51 -0.2 893,235 + MPMX19_03481 0.51 -0.4 893,235 + MPMX19_03481 0.51 -1.5 893,235 + MPMX19_03481 0.51 +0.5 893,235 + MPMX19_03481 0.51 +0.8 893,235 + MPMX19_03481 0.51 -0.9 893,236 - MPMX19_03481 0.51 -0.4 893,280 + MPMX19_03481 0.59 +0.5 893,280 + MPMX19_03481 0.59 -2.9 893,280 + MPMX19_03481 0.59 +0.5 893,280 + MPMX19_03481 0.59 -0.3 893,281 - MPMX19_03481 0.59 -1.2 893,281 - MPMX19_03481 0.59 -2.7 893,281 - MPMX19_03481 0.59 -1.1 893,281 - MPMX19_03481 0.59 -0.1 893,313 + MPMX19_03481 0.65 -1.1 893,313 + MPMX19_03481 0.65 +1.5 893,313 + MPMX19_03481 0.65 +0.4 893,313 + MPMX19_03481 0.65 -0.3 893,313 + MPMX19_03481 0.65 -0.8 893,313 + MPMX19_03481 0.65 -0.7 893,313 + MPMX19_03481 0.65 +0.5
Or see this region's nucleotide sequence