Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03477

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03475 and MPMX19_03476 are separated by 12 nucleotidesMPMX19_03476 and MPMX19_03477 are separated by 17 nucleotidesMPMX19_03477 and MPMX19_03478 are separated by 30 nucleotides MPMX19_03475: MPMX19_03475 - Putative acid--amine ligase YgiC, at 886,115 to 887,323 _03475 MPMX19_03476: MPMX19_03476 - hypothetical protein, at 887,336 to 888,100 _03476 MPMX19_03477: MPMX19_03477 - Nicotinate phosphoribosyltransferase, at 888,118 to 889,434 _03477 MPMX19_03478: MPMX19_03478 - Glutamine-dependent NAD(+) synthetase, at 889,465 to 891,174 _03478 Position (kb) 888 889 890Strain fitness (log2 ratio) -2 -1 0 1 2at 887.142 kb on - strand, within MPMX19_03475at 887.163 kb on - strand, within MPMX19_03475at 887.163 kb on - strand, within MPMX19_03475at 887.394 kb on + strandat 887.395 kb on - strandat 887.395 kb on - strandat 887.395 kb on - strandat 887.481 kb on + strand, within MPMX19_03476at 887.481 kb on + strand, within MPMX19_03476at 887.482 kb on - strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.850 kb on + strand, within MPMX19_03476at 888.170 kb on + strandat 888.210 kb on - strandat 888.210 kb on - strandat 888.210 kb on - strandat 888.356 kb on + strand, within MPMX19_03477at 888.356 kb on + strand, within MPMX19_03477at 888.356 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.648 kb on - strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.929 kb on + strand, within MPMX19_03477at 888.929 kb on + strand, within MPMX19_03477at 888.929 kb on + strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.008 kb on - strand, within MPMX19_03477at 889.008 kb on - strand, within MPMX19_03477at 889.154 kb on + strand, within MPMX19_03477at 889.154 kb on + strand, within MPMX19_03477at 889.154 kb on + strand, within MPMX19_03477at 889.154 kb on + strand, within MPMX19_03477at 889.154 kb on + strand, within MPMX19_03477at 889.154 kb on + strand, within MPMX19_03477at 889.154 kb on + strand, within MPMX19_03477at 889.155 kb on - strand, within MPMX19_03477at 889.155 kb on - strand, within MPMX19_03477at 889.155 kb on - strand, within MPMX19_03477at 889.155 kb on - strand, within MPMX19_03477at 889.349 kb on + strandat 889.349 kb on + strandat 889.349 kb on + strandat 889.350 kb on - strandat 889.350 kb on - strandat 889.350 kb on - strandat 889.350 kb on - strandat 889.475 kb on + strandat 889.511 kb on + strandat 889.511 kb on + strandat 889.512 kb on - strandat 889.559 kb on + strandat 889.559 kb on + strandat 889.560 kb on - strandat 889.560 kb on - strandat 889.599 kb on - strandat 889.706 kb on + strand, within MPMX19_03478at 889.706 kb on + strand, within MPMX19_03478at 889.707 kb on - strand, within MPMX19_03478at 889.773 kb on + strand, within MPMX19_03478at 889.773 kb on + strand, within MPMX19_03478at 889.773 kb on + strand, within MPMX19_03478at 889.773 kb on + strand, within MPMX19_03478at 889.865 kb on + strand, within MPMX19_03478at 889.865 kb on + strand, within MPMX19_03478at 889.865 kb on + strand, within MPMX19_03478at 889.866 kb on - strand, within MPMX19_03478at 889.866 kb on - strand, within MPMX19_03478at 889.866 kb on - strand, within MPMX19_03478at 889.866 kb on - strand, within MPMX19_03478at 889.866 kb on - strand, within MPMX19_03478at 889.866 kb on - strand, within MPMX19_03478at 889.886 kb on + strand, within MPMX19_03478at 889.886 kb on + strand, within MPMX19_03478at 889.907 kb on + strand, within MPMX19_03478at 890.183 kb on + strand, within MPMX19_03478at 890.183 kb on + strand, within MPMX19_03478at 890.183 kb on + strand, within MPMX19_03478at 890.183 kb on + strand, within MPMX19_03478at 890.183 kb on + strand, within MPMX19_03478at 890.183 kb on + strand, within MPMX19_03478at 890.183 kb on + strand, within MPMX19_03478at 890.184 kb on - strand, within MPMX19_03478at 890.184 kb on - strand, within MPMX19_03478at 890.184 kb on - strand, within MPMX19_03478at 890.184 kb on - strand, within MPMX19_03478at 890.184 kb on - strand, within MPMX19_03478at 890.184 kb on - strand, within MPMX19_03478at 890.184 kb on - strand, within MPMX19_03478at 890.315 kb on + strand, within MPMX19_03478at 890.315 kb on + strand, within MPMX19_03478at 890.316 kb on - strand, within MPMX19_03478at 890.316 kb on - strand, within MPMX19_03478at 890.316 kb on - strand, within MPMX19_03478at 890.316 kb on - strand, within MPMX19_03478at 890.316 kb on - strand, within MPMX19_03478at 890.345 kb on + strand, within MPMX19_03478

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
887,142 - MPMX19_03475 0.85 -1.2
887,163 - MPMX19_03475 0.87 +0.3
887,163 - MPMX19_03475 0.87 -0.5
887,394 + +0.7
887,395 - +0.1
887,395 - +0.0
887,395 - -0.1
887,481 + MPMX19_03476 0.19 +1.5
887,481 + MPMX19_03476 0.19 +1.2
887,482 - MPMX19_03476 0.19 +1.3
887,502 + MPMX19_03476 0.22 +2.6
887,502 + MPMX19_03476 0.22 -1.1
887,502 + MPMX19_03476 0.22 -0.8
887,502 + MPMX19_03476 0.22 -0.7
887,502 + MPMX19_03476 0.22 -1.5
887,502 + MPMX19_03476 0.22 -0.6
887,503 - MPMX19_03476 0.22 -0.1
887,503 - MPMX19_03476 0.22 -0.0
887,503 - MPMX19_03476 0.22 -0.3
887,850 + MPMX19_03476 0.67 +0.1
888,170 + +0.7
888,210 - +0.3
888,210 - -1.3
888,210 - -0.7
888,356 + MPMX19_03477 0.18 +0.7
888,356 + MPMX19_03477 0.18 -0.1
888,356 + MPMX19_03477 0.18 -1.9
888,482 + MPMX19_03477 0.28 -0.1
888,482 + MPMX19_03477 0.28 +0.4
888,482 + MPMX19_03477 0.28 +0.7
888,482 + MPMX19_03477 0.28 -0.7
888,482 + MPMX19_03477 0.28 +0.6
888,482 + MPMX19_03477 0.28 -0.6
888,482 + MPMX19_03477 0.28 -0.3
888,482 + MPMX19_03477 0.28 -1.2
888,482 + MPMX19_03477 0.28 +0.5
888,482 + MPMX19_03477 0.28 -1.4
888,483 - MPMX19_03477 0.28 -0.2
888,483 - MPMX19_03477 0.28 +0.5
888,483 - MPMX19_03477 0.28 -0.5
888,483 - MPMX19_03477 0.28 -1.2
888,483 - MPMX19_03477 0.28 +0.1
888,483 - MPMX19_03477 0.28 -0.3
888,483 - MPMX19_03477 0.28 -0.1
888,483 - MPMX19_03477 0.28 -0.0
888,617 + MPMX19_03477 0.38 -0.1
888,617 + MPMX19_03477 0.38 +0.5
888,617 + MPMX19_03477 0.38 -0.8
888,617 + MPMX19_03477 0.38 +1.5
888,617 + MPMX19_03477 0.38 -1.1
888,617 + MPMX19_03477 0.38 +0.0
888,617 + MPMX19_03477 0.38 -0.7
888,618 - MPMX19_03477 0.38 +0.2
888,618 - MPMX19_03477 0.38 +0.2
888,618 - MPMX19_03477 0.38 -1.8
888,618 - MPMX19_03477 0.38 +0.5
888,618 - MPMX19_03477 0.38 -0.2
888,618 - MPMX19_03477 0.38 -0.5
888,618 - MPMX19_03477 0.38 -0.5
888,618 - MPMX19_03477 0.38 +0.7
888,618 - MPMX19_03477 0.38 +2.2
888,618 - MPMX19_03477 0.38 +1.3
888,618 - MPMX19_03477 0.38 +0.1
888,618 - MPMX19_03477 0.38 +0.4
888,618 - MPMX19_03477 0.38 +0.4
888,647 + MPMX19_03477 0.40 -0.3
888,647 + MPMX19_03477 0.40 +0.5
888,647 + MPMX19_03477 0.40 +0.9
888,647 + MPMX19_03477 0.40 -0.4
888,648 - MPMX19_03477 0.40 -0.2
888,815 + MPMX19_03477 0.53 +1.7
888,815 + MPMX19_03477 0.53 +1.1
888,815 + MPMX19_03477 0.53 -0.6
888,815 + MPMX19_03477 0.53 -0.2
888,815 + MPMX19_03477 0.53 -0.3
888,815 + MPMX19_03477 0.53 +1.4
888,815 + MPMX19_03477 0.53 +0.8
888,815 + MPMX19_03477 0.53 +1.5
888,815 + MPMX19_03477 0.53 +0.1
888,815 + MPMX19_03477 0.53 -0.7
888,815 + MPMX19_03477 0.53 +0.7
888,815 + MPMX19_03477 0.53 -0.9
888,816 - MPMX19_03477 0.53 +1.9
888,816 - MPMX19_03477 0.53 +0.3
888,816 - MPMX19_03477 0.53 +0.5
888,816 - MPMX19_03477 0.53 -0.8
888,816 - MPMX19_03477 0.53 +0.1
888,816 - MPMX19_03477 0.53 +0.7
888,816 - MPMX19_03477 0.53 +0.0
888,816 - MPMX19_03477 0.53 +0.2
888,816 - MPMX19_03477 0.53 -0.8
888,816 - MPMX19_03477 0.53 -0.3
888,816 - MPMX19_03477 0.53 +0.1
888,816 - MPMX19_03477 0.53 -0.3
888,816 - MPMX19_03477 0.53 -0.5
888,816 - MPMX19_03477 0.53 -0.2
888,816 - MPMX19_03477 0.53 -0.8
888,816 - MPMX19_03477 0.53 +0.3
888,929 + MPMX19_03477 0.62 -0.8
888,929 + MPMX19_03477 0.62 -1.2
888,929 + MPMX19_03477 0.62 -1.1
888,930 - MPMX19_03477 0.62 +0.5
888,930 - MPMX19_03477 0.62 -0.4
888,930 - MPMX19_03477 0.62 +0.0
888,930 - MPMX19_03477 0.62 -0.2
889,007 + MPMX19_03477 0.68 -0.1
889,007 + MPMX19_03477 0.68 -0.7
889,007 + MPMX19_03477 0.68 -0.4
889,007 + MPMX19_03477 0.68 -1.3
889,007 + MPMX19_03477 0.68 +0.5
889,008 - MPMX19_03477 0.68 +0.1
889,008 - MPMX19_03477 0.68 +0.3
889,154 + MPMX19_03477 0.79 -0.1
889,154 + MPMX19_03477 0.79 +0.2
889,154 + MPMX19_03477 0.79 +0.2
889,154 + MPMX19_03477 0.79 +0.2
889,154 + MPMX19_03477 0.79 -0.2
889,154 + MPMX19_03477 0.79 -1.1
889,154 + MPMX19_03477 0.79 -0.2
889,155 - MPMX19_03477 0.79 +1.2
889,155 - MPMX19_03477 0.79 -1.2
889,155 - MPMX19_03477 0.79 +0.1
889,155 - MPMX19_03477 0.79 -0.4
889,349 + -0.1
889,349 + -0.5
889,349 + -0.5
889,350 - -1.1
889,350 - -1.8
889,350 - -1.1
889,350 - +0.8
889,475 + +0.9
889,511 + +0.2
889,511 + -1.3
889,512 - +1.1
889,559 + +0.7
889,559 + +1.4
889,560 - +0.8
889,560 - +0.5
889,599 - -0.7
889,706 + MPMX19_03478 0.14 +1.0
889,706 + MPMX19_03478 0.14 -0.2
889,707 - MPMX19_03478 0.14 +0.1
889,773 + MPMX19_03478 0.18 +0.4
889,773 + MPMX19_03478 0.18 -0.5
889,773 + MPMX19_03478 0.18 -0.2
889,773 + MPMX19_03478 0.18 +1.2
889,865 + MPMX19_03478 0.23 -0.8
889,865 + MPMX19_03478 0.23 +0.2
889,865 + MPMX19_03478 0.23 -0.3
889,866 - MPMX19_03478 0.23 -0.5
889,866 - MPMX19_03478 0.23 -1.1
889,866 - MPMX19_03478 0.23 -1.3
889,866 - MPMX19_03478 0.23 -0.6
889,866 - MPMX19_03478 0.23 +0.8
889,866 - MPMX19_03478 0.23 -1.5
889,886 + MPMX19_03478 0.25 -1.2
889,886 + MPMX19_03478 0.25 +1.4
889,907 + MPMX19_03478 0.26 +1.0
890,183 + MPMX19_03478 0.42 -2.3
890,183 + MPMX19_03478 0.42 +1.9
890,183 + MPMX19_03478 0.42 -0.2
890,183 + MPMX19_03478 0.42 +0.8
890,183 + MPMX19_03478 0.42 -0.8
890,183 + MPMX19_03478 0.42 -0.1
890,183 + MPMX19_03478 0.42 +0.1
890,184 - MPMX19_03478 0.42 -0.1
890,184 - MPMX19_03478 0.42 -0.7
890,184 - MPMX19_03478 0.42 +0.7
890,184 - MPMX19_03478 0.42 -0.1
890,184 - MPMX19_03478 0.42 -0.0
890,184 - MPMX19_03478 0.42 +1.1
890,184 - MPMX19_03478 0.42 +0.3
890,315 + MPMX19_03478 0.50 +0.7
890,315 + MPMX19_03478 0.50 -1.0
890,316 - MPMX19_03478 0.50 +0.3
890,316 - MPMX19_03478 0.50 +0.9
890,316 - MPMX19_03478 0.50 +0.3
890,316 - MPMX19_03478 0.50 +0.3
890,316 - MPMX19_03478 0.50 -1.7
890,345 + MPMX19_03478 0.51 -1.7

Or see this region's nucleotide sequence