Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03434

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03432 and MPMX19_03433 overlap by 1 nucleotidesMPMX19_03433 and MPMX19_03434 are separated by 27 nucleotidesMPMX19_03434 and MPMX19_03435 are separated by 16 nucleotidesMPMX19_03435 and MPMX19_03436 are separated by 15 nucleotides MPMX19_03432: MPMX19_03432 - hypothetical protein, at 824,733 to 825,530 _03432 MPMX19_03433: MPMX19_03433 - hypothetical protein, at 825,530 to 825,979 _03433 MPMX19_03434: MPMX19_03434 - hypothetical protein, at 826,007 to 827,350 _03434 MPMX19_03435: MPMX19_03435 - hypothetical protein, at 827,367 to 828,263 _03435 MPMX19_03436: MPMX19_03436 - hypothetical protein, at 828,279 to 832,529 _03436 Position (kb) 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 825.162 kb on + strand, within MPMX19_03432at 825.162 kb on + strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.214 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.405 kb on + strand, within MPMX19_03432at 825.405 kb on + strand, within MPMX19_03432at 825.406 kb on - strand, within MPMX19_03432at 825.765 kb on - strand, within MPMX19_03433at 825.878 kb on + strand, within MPMX19_03433at 825.879 kb on - strand, within MPMX19_03433at 825.879 kb on - strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.292 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.886 kb on + strand, within MPMX19_03434at 826.887 kb on - strand, within MPMX19_03434at 826.914 kb on - strand, within MPMX19_03434at 827.256 kb on - strandat 827.256 kb on - strandat 827.256 kb on - strandat 827.724 kb on + strand, within MPMX19_03435at 827.724 kb on + strand, within MPMX19_03435at 827.724 kb on + strand, within MPMX19_03435at 827.725 kb on - strand, within MPMX19_03435at 827.725 kb on - strand, within MPMX19_03435at 827.725 kb on - strand, within MPMX19_03435at 827.913 kb on + strand, within MPMX19_03435at 827.914 kb on - strand, within MPMX19_03435at 827.914 kb on - strand, within MPMX19_03435at 828.079 kb on - strand, within MPMX19_03435at 828.079 kb on - strand, within MPMX19_03435at 828.079 kb on - strand, within MPMX19_03435at 828.284 kb on + strandat 828.284 kb on + strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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825,162 + MPMX19_03432 0.54 -0.6
825,162 + MPMX19_03432 0.54 -0.7
825,163 - MPMX19_03432 0.54 +1.0
825,163 - MPMX19_03432 0.54 +0.1
825,163 - MPMX19_03432 0.54 -0.1
825,163 - MPMX19_03432 0.54 +2.3
825,163 - MPMX19_03432 0.54 +0.2
825,214 + MPMX19_03432 0.60 -0.5
825,375 + MPMX19_03432 0.80 -0.3
825,375 + MPMX19_03432 0.80 -0.7
825,375 + MPMX19_03432 0.80 +1.4
825,375 + MPMX19_03432 0.80 -0.2
825,375 + MPMX19_03432 0.80 +0.7
825,375 + MPMX19_03432 0.80 -0.8
825,375 + MPMX19_03432 0.80 -0.6
825,375 + MPMX19_03432 0.80 -1.0
825,376 - MPMX19_03432 0.81 +0.5
825,376 - MPMX19_03432 0.81 -0.3
825,376 - MPMX19_03432 0.81 -1.8
825,376 - MPMX19_03432 0.81 -1.1
825,405 + MPMX19_03432 0.84 +1.3
825,405 + MPMX19_03432 0.84 -0.5
825,406 - MPMX19_03432 0.84 -0.1
825,765 - MPMX19_03433 0.52 -0.1
825,878 + MPMX19_03433 0.77 -2.2
825,879 - MPMX19_03433 0.78 -1.3
825,879 - MPMX19_03433 0.78 -0.4
825,887 + MPMX19_03433 0.79 -0.7
825,887 + MPMX19_03433 0.79 +1.9
825,887 + MPMX19_03433 0.79 +0.9
825,887 + MPMX19_03433 0.79 +0.3
825,887 + MPMX19_03433 0.79 +0.0
825,887 + MPMX19_03433 0.79 -0.8
825,887 + MPMX19_03433 0.79 -0.0
825,887 + MPMX19_03433 0.79 -1.0
825,887 + MPMX19_03433 0.79 -0.6
825,887 + MPMX19_03433 0.79 +0.8
825,887 + MPMX19_03433 0.79 +0.2
825,887 + MPMX19_03433 0.79 -0.1
825,887 + MPMX19_03433 0.79 -0.3
825,888 - MPMX19_03433 0.80 -0.7
825,888 - MPMX19_03433 0.80 +0.7
825,888 - MPMX19_03433 0.80 -0.1
825,888 - MPMX19_03433 0.80 +0.8
825,888 - MPMX19_03433 0.80 +0.1
825,888 - MPMX19_03433 0.80 -1.8
825,888 - MPMX19_03433 0.80 +2.1
825,888 - MPMX19_03433 0.80 +0.8
825,888 - MPMX19_03433 0.80 +0.3
825,888 - MPMX19_03433 0.80 -0.8
826,115 + -1.0
826,115 + -1.6
826,115 + -0.9
826,115 + +0.5
826,115 + -0.5
826,115 + -0.3
826,115 + +0.2
826,115 + -2.5
826,115 + +1.5
826,116 - -0.9
826,116 - -0.6
826,116 - -0.3
826,116 - -1.7
826,116 - +0.1
826,116 - -0.6
826,116 - +0.3
826,292 + MPMX19_03434 0.21 +0.5
826,811 + MPMX19_03434 0.60 -0.5
826,811 + MPMX19_03434 0.60 +1.3
826,811 + MPMX19_03434 0.60 -0.5
826,811 + MPMX19_03434 0.60 +0.5
826,811 + MPMX19_03434 0.60 -0.1
826,812 - MPMX19_03434 0.60 -0.7
826,812 - MPMX19_03434 0.60 -0.2
826,812 - MPMX19_03434 0.60 -1.8
826,812 - MPMX19_03434 0.60 +0.5
826,812 - MPMX19_03434 0.60 +1.3
826,812 - MPMX19_03434 0.60 +0.1
826,812 - MPMX19_03434 0.60 -0.1
826,812 - MPMX19_03434 0.60 -1.2
826,886 + MPMX19_03434 0.65 +0.1
826,887 - MPMX19_03434 0.65 +0.5
826,914 - MPMX19_03434 0.67 -0.1
827,256 - -0.1
827,256 - -0.2
827,256 - +0.1
827,724 + MPMX19_03435 0.40 +0.1
827,724 + MPMX19_03435 0.40 +1.1
827,724 + MPMX19_03435 0.40 +0.2
827,725 - MPMX19_03435 0.40 +0.4
827,725 - MPMX19_03435 0.40 -0.5
827,725 - MPMX19_03435 0.40 +1.5
827,913 + MPMX19_03435 0.61 -1.1
827,914 - MPMX19_03435 0.61 +0.8
827,914 - MPMX19_03435 0.61 -0.6
828,079 - MPMX19_03435 0.79 -0.9
828,079 - MPMX19_03435 0.79 -2.8
828,079 - MPMX19_03435 0.79 -0.4
828,284 + -0.5
828,284 + +0.3
828,285 - +0.1
828,285 - +0.1
828,285 - -0.8
828,285 - -0.8
828,285 - -0.1

Or see this region's nucleotide sequence