Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03348

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03347 and MPMX19_03348 are separated by 60 nucleotidesMPMX19_03348 and MPMX19_03349 are separated by 5 nucleotidesMPMX19_03349 and MPMX19_03350 overlap by 4 nucleotides MPMX19_03347: MPMX19_03347 - Putative multidrug export ATP-binding/permease protein, at 705,434 to 707,137 _03347 MPMX19_03348: MPMX19_03348 - hypothetical protein, at 707,198 to 708,340 _03348 MPMX19_03349: MPMX19_03349 - hypothetical protein, at 708,346 to 708,666 _03349 MPMX19_03350: MPMX19_03350 - GTP 3',8-cyclase, at 708,663 to 710,096 _03350 Position (kb) 707 708 709Strain fitness (log2 ratio) -2 -1 0 1 2at 706.293 kb on + strand, within MPMX19_03347at 706.293 kb on + strand, within MPMX19_03347at 706.293 kb on + strand, within MPMX19_03347at 706.294 kb on - strand, within MPMX19_03347at 706.815 kb on + strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.848 kb on + strand, within MPMX19_03347at 706.848 kb on + strand, within MPMX19_03347at 706.848 kb on + strand, within MPMX19_03347at 706.849 kb on - strand, within MPMX19_03347at 706.849 kb on - strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.897 kb on - strand, within MPMX19_03347at 706.897 kb on - strand, within MPMX19_03347at 706.897 kb on - strand, within MPMX19_03347at 707.161 kb on + strandat 707.161 kb on + strandat 707.162 kb on - strandat 707.195 kb on - strandat 707.195 kb on - strandat 707.199 kb on + strandat 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.358 kb on + strand, within MPMX19_03348at 707.358 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.430 kb on + strand, within MPMX19_03348at 707.431 kb on - strand, within MPMX19_03348at 707.431 kb on - strand, within MPMX19_03348at 707.431 kb on - strand, within MPMX19_03348at 707.440 kb on - strand, within MPMX19_03348at 707.604 kb on + strand, within MPMX19_03348at 707.604 kb on + strand, within MPMX19_03348at 707.605 kb on - strand, within MPMX19_03348at 707.605 kb on - strand, within MPMX19_03348at 707.605 kb on - strand, within MPMX19_03348at 707.739 kb on + strand, within MPMX19_03348at 707.740 kb on - strand, within MPMX19_03348at 707.859 kb on + strand, within MPMX19_03348at 707.860 kb on - strand, within MPMX19_03348at 707.860 kb on - strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.422 kb on + strand, within MPMX19_03349at 708.422 kb on + strand, within MPMX19_03349at 708.422 kb on + strand, within MPMX19_03349at 708.479 kb on + strand, within MPMX19_03349at 708.480 kb on - strand, within MPMX19_03349at 708.691 kb on + strandat 708.691 kb on + strandat 708.691 kb on + strandat 708.692 kb on - strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.734 kb on - strandat 708.734 kb on - strandat 708.778 kb on + strandat 708.778 kb on + strandat 708.778 kb on + strandat 708.778 kb on + strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.817 kb on + strand, within MPMX19_03350at 708.817 kb on + strand, within MPMX19_03350at 708.818 kb on - strand, within MPMX19_03350at 708.829 kb on + strand, within MPMX19_03350at 708.952 kb on + strand, within MPMX19_03350at 708.952 kb on + strand, within MPMX19_03350at 708.952 kb on + strand, within MPMX19_03350at 708.953 kb on - strand, within MPMX19_03350at 709.135 kb on + strand, within MPMX19_03350at 709.135 kb on + strand, within MPMX19_03350at 709.136 kb on - strand, within MPMX19_03350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
706,293 + MPMX19_03347 0.50 -1.2
706,293 + MPMX19_03347 0.50 +1.2
706,293 + MPMX19_03347 0.50 +1.7
706,294 - MPMX19_03347 0.50 +1.1
706,815 + MPMX19_03347 0.81 +0.5
706,816 - MPMX19_03347 0.81 -1.1
706,816 - MPMX19_03347 0.81 -2.6
706,816 - MPMX19_03347 0.81 +1.5
706,816 - MPMX19_03347 0.81 +0.5
706,816 - MPMX19_03347 0.81 -0.1
706,848 + MPMX19_03347 0.83 +0.6
706,848 + MPMX19_03347 0.83 +1.0
706,848 + MPMX19_03347 0.83 +0.2
706,849 - MPMX19_03347 0.83 +0.5
706,849 - MPMX19_03347 0.83 +0.2
706,896 + MPMX19_03347 0.86 -1.9
706,896 + MPMX19_03347 0.86 -0.2
706,896 + MPMX19_03347 0.86 -0.6
706,896 + MPMX19_03347 0.86 -0.1
706,896 + MPMX19_03347 0.86 -0.5
706,897 - MPMX19_03347 0.86 -0.1
706,897 - MPMX19_03347 0.86 -1.4
706,897 - MPMX19_03347 0.86 -1.3
707,161 + +0.1
707,161 + +1.1
707,162 - -0.6
707,195 - -0.2
707,195 - -0.9
707,199 + -0.3
707,322 + MPMX19_03348 0.11 -0.8
707,322 + MPMX19_03348 0.11 -0.9
707,322 + MPMX19_03348 0.11 +0.5
707,322 + MPMX19_03348 0.11 -0.4
707,322 + MPMX19_03348 0.11 -0.1
707,323 - MPMX19_03348 0.11 +0.9
707,323 - MPMX19_03348 0.11 +0.7
707,323 - MPMX19_03348 0.11 +0.1
707,323 - MPMX19_03348 0.11 +0.4
707,323 - MPMX19_03348 0.11 -1.3
707,323 - MPMX19_03348 0.11 +0.8
707,358 + MPMX19_03348 0.14 +0.2
707,358 + MPMX19_03348 0.14 +0.9
707,361 + MPMX19_03348 0.14 +0.1
707,361 + MPMX19_03348 0.14 -0.3
707,361 + MPMX19_03348 0.14 -0.0
707,361 + MPMX19_03348 0.14 +0.5
707,361 + MPMX19_03348 0.14 -1.9
707,361 + MPMX19_03348 0.14 -1.0
707,361 + MPMX19_03348 0.14 +0.2
707,361 + MPMX19_03348 0.14 +0.5
707,361 + MPMX19_03348 0.14 -0.3
707,361 + MPMX19_03348 0.14 +0.8
707,361 + MPMX19_03348 0.14 -0.5
707,361 + MPMX19_03348 0.14 -0.5
707,361 + MPMX19_03348 0.14 +0.1
707,362 - MPMX19_03348 0.14 -2.6
707,362 - MPMX19_03348 0.14 -0.2
707,362 - MPMX19_03348 0.14 +0.4
707,362 - MPMX19_03348 0.14 -0.2
707,362 - MPMX19_03348 0.14 +0.9
707,362 - MPMX19_03348 0.14 +0.3
707,362 - MPMX19_03348 0.14 -1.2
707,362 - MPMX19_03348 0.14 -0.3
707,430 + MPMX19_03348 0.20 +0.0
707,431 - MPMX19_03348 0.20 -0.0
707,431 - MPMX19_03348 0.20 -0.3
707,431 - MPMX19_03348 0.20 -0.6
707,440 - MPMX19_03348 0.21 -0.4
707,604 + MPMX19_03348 0.36 +0.3
707,604 + MPMX19_03348 0.36 -1.8
707,605 - MPMX19_03348 0.36 +0.3
707,605 - MPMX19_03348 0.36 +0.0
707,605 - MPMX19_03348 0.36 +0.8
707,739 + MPMX19_03348 0.47 -1.0
707,740 - MPMX19_03348 0.47 -1.0
707,859 + MPMX19_03348 0.58 -0.6
707,860 - MPMX19_03348 0.58 -1.1
707,860 - MPMX19_03348 0.58 -0.4
707,928 + MPMX19_03348 0.64 -0.6
707,928 + MPMX19_03348 0.64 +0.1
707,928 + MPMX19_03348 0.64 -1.0
707,928 + MPMX19_03348 0.64 -0.6
707,928 + MPMX19_03348 0.64 +0.4
707,928 + MPMX19_03348 0.64 -0.6
707,928 + MPMX19_03348 0.64 +0.2
707,928 + MPMX19_03348 0.64 -2.2
707,928 + MPMX19_03348 0.64 +0.4
707,928 + MPMX19_03348 0.64 -0.5
707,928 + MPMX19_03348 0.64 -0.8
707,929 - MPMX19_03348 0.64 +0.5
707,929 - MPMX19_03348 0.64 +2.4
707,929 - MPMX19_03348 0.64 -1.2
707,929 - MPMX19_03348 0.64 +1.1
707,929 - MPMX19_03348 0.64 -1.6
707,929 - MPMX19_03348 0.64 -0.4
707,929 - MPMX19_03348 0.64 +0.6
707,929 - MPMX19_03348 0.64 +1.4
707,929 - MPMX19_03348 0.64 -0.1
707,929 - MPMX19_03348 0.64 -0.1
708,087 + MPMX19_03348 0.78 -0.4
708,087 + MPMX19_03348 0.78 -0.3
708,087 + MPMX19_03348 0.78 -0.5
708,087 + MPMX19_03348 0.78 +0.9
708,088 - MPMX19_03348 0.78 +0.6
708,088 - MPMX19_03348 0.78 -1.2
708,088 - MPMX19_03348 0.78 +0.5
708,088 - MPMX19_03348 0.78 -1.5
708,088 - MPMX19_03348 0.78 -0.3
708,088 - MPMX19_03348 0.78 +1.8
708,225 + MPMX19_03348 0.90 +1.2
708,225 + MPMX19_03348 0.90 +0.3
708,225 + MPMX19_03348 0.90 +0.4
708,225 + MPMX19_03348 0.90 -0.8
708,225 + MPMX19_03348 0.90 -0.3
708,225 + MPMX19_03348 0.90 +1.3
708,226 - +0.1
708,226 - +0.0
708,226 - -1.4
708,226 - -0.9
708,226 - -1.8
708,226 - -2.3
708,422 + MPMX19_03349 0.24 +0.1
708,422 + MPMX19_03349 0.24 -1.8
708,422 + MPMX19_03349 0.24 -0.4
708,479 + MPMX19_03349 0.41 -1.3
708,480 - MPMX19_03349 0.42 -1.2
708,691 + -0.2
708,691 + -0.9
708,691 + -0.3
708,692 - +0.3
708,733 + -0.5
708,733 + -0.2
708,733 + +0.0
708,733 + -0.8
708,733 + -0.1
708,734 - +0.1
708,734 - -0.5
708,778 + +0.4
708,778 + -0.1
708,778 + +1.0
708,778 + -0.8
708,779 - -0.1
708,779 - +1.1
708,779 - -1.5
708,779 - +0.1
708,779 - -0.7
708,779 - -0.2
708,779 - -1.1
708,779 - -0.7
708,779 - +0.4
708,784 + +1.1
708,784 + -0.3
708,784 + -1.7
708,784 + -0.4
708,784 + -2.2
708,785 - -0.7
708,785 - +0.2
708,785 - -0.3
708,785 - -0.5
708,785 - -0.1
708,785 - -0.1
708,785 - -0.6
708,817 + MPMX19_03350 0.11 +0.3
708,817 + MPMX19_03350 0.11 +1.4
708,818 - MPMX19_03350 0.11 -0.6
708,829 + MPMX19_03350 0.12 -0.5
708,952 + MPMX19_03350 0.20 -0.4
708,952 + MPMX19_03350 0.20 +0.9
708,952 + MPMX19_03350 0.20 +1.5
708,953 - MPMX19_03350 0.20 -0.1
709,135 + MPMX19_03350 0.33 +0.0
709,135 + MPMX19_03350 0.33 -1.0
709,136 - MPMX19_03350 0.33 +0.9

Or see this region's nucleotide sequence