Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03336

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03334 and MPMX19_03335 are separated by 183 nucleotidesMPMX19_03335 and MPMX19_03336 are separated by 43 nucleotidesMPMX19_03336 and MPMX19_03337 are separated by 75 nucleotides MPMX19_03334: MPMX19_03334 - Alanine racemase 1, at 688,234 to 689,343 _03334 MPMX19_03335: MPMX19_03335 - hypothetical protein, at 689,527 to 690,003 _03335 MPMX19_03336: MPMX19_03336 - hypothetical protein, at 690,047 to 691,135 _03336 MPMX19_03337: MPMX19_03337 - Periplasmic oligopeptide-binding protein, at 691,211 to 692,830 _03337 Position (kb) 690 691 692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 689.294 kb on + strandat 689.294 kb on + strandat 689.294 kb on + strandat 689.294 kb on + strandat 689.295 kb on - strandat 689.295 kb on - strandat 689.382 kb on + strandat 689.383 kb on - strandat 689.421 kb on + strandat 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 690.024 kb on + strandat 690.024 kb on + strandat 690.105 kb on + strandat 690.105 kb on + strandat 690.106 kb on - strandat 690.106 kb on - strandat 690.106 kb on - strandat 690.204 kb on + strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.387 kb on + strand, within MPMX19_03336at 690.504 kb on + strand, within MPMX19_03336at 690.504 kb on + strand, within MPMX19_03336at 690.543 kb on + strand, within MPMX19_03336at 690.630 kb on + strand, within MPMX19_03336at 690.631 kb on - strand, within MPMX19_03336at 690.645 kb on + strand, within MPMX19_03336at 690.646 kb on - strand, within MPMX19_03336at 690.672 kb on + strand, within MPMX19_03336at 690.672 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.754 kb on - strand, within MPMX19_03336at 690.754 kb on - strand, within MPMX19_03336at 690.870 kb on + strand, within MPMX19_03336at 690.870 kb on + strand, within MPMX19_03336at 690.871 kb on - strand, within MPMX19_03336at 691.041 kb on + strandat 691.041 kb on + strandat 691.042 kb on - strandat 691.042 kb on - strandat 691.272 kb on + strandat 691.272 kb on + strandat 691.272 kb on + strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.323 kb on + strandat 691.323 kb on + strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.417 kb on + strand, within MPMX19_03337at 691.417 kb on + strand, within MPMX19_03337at 691.417 kb on + strand, within MPMX19_03337at 691.418 kb on - strand, within MPMX19_03337at 691.418 kb on - strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.518 kb on + strand, within MPMX19_03337at 691.518 kb on + strand, within MPMX19_03337at 691.578 kb on + strand, within MPMX19_03337at 691.578 kb on + strand, within MPMX19_03337at 691.578 kb on + strand, within MPMX19_03337at 691.579 kb on - strand, within MPMX19_03337at 691.579 kb on - strand, within MPMX19_03337at 691.579 kb on - strand, within MPMX19_03337at 691.690 kb on - strand, within MPMX19_03337at 691.690 kb on - strand, within MPMX19_03337at 691.809 kb on + strand, within MPMX19_03337at 691.809 kb on + strand, within MPMX19_03337at 691.809 kb on + strand, within MPMX19_03337at 691.839 kb on + strand, within MPMX19_03337at 691.839 kb on + strand, within MPMX19_03337at 691.962 kb on + strand, within MPMX19_03337at 691.963 kb on - strand, within MPMX19_03337at 691.963 kb on - strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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689,294 + -0.9
689,294 + -0.2
689,294 + +0.5
689,294 + -1.5
689,295 - -0.5
689,295 - -1.9
689,382 + -0.3
689,383 - -2.3
689,421 + +0.3
689,730 - MPMX19_03335 0.43 +0.8
689,730 - MPMX19_03335 0.43 -0.1
689,730 - MPMX19_03335 0.43 -0.8
689,730 - MPMX19_03335 0.43 +0.3
689,730 - MPMX19_03335 0.43 -1.8
689,730 - MPMX19_03335 0.43 -2.6
689,730 - MPMX19_03335 0.43 -1.3
690,024 + -0.3
690,024 + -0.2
690,105 + +0.2
690,105 + +0.1
690,106 - -0.4
690,106 - -0.5
690,106 - +0.3
690,204 + MPMX19_03336 0.14 +0.2
690,205 - MPMX19_03336 0.15 +1.3
690,205 - MPMX19_03336 0.15 -0.3
690,205 - MPMX19_03336 0.15 +0.8
690,387 + MPMX19_03336 0.31 -0.5
690,504 + MPMX19_03336 0.42 -0.6
690,504 + MPMX19_03336 0.42 +0.4
690,543 + MPMX19_03336 0.46 -0.8
690,630 + MPMX19_03336 0.54 +1.5
690,631 - MPMX19_03336 0.54 -0.4
690,645 + MPMX19_03336 0.55 +0.1
690,646 - MPMX19_03336 0.55 -0.5
690,672 + MPMX19_03336 0.57 -0.6
690,672 + MPMX19_03336 0.57 +1.1
690,753 + MPMX19_03336 0.65 -0.1
690,753 + MPMX19_03336 0.65 +0.1
690,753 + MPMX19_03336 0.65 +0.9
690,753 + MPMX19_03336 0.65 -0.3
690,753 + MPMX19_03336 0.65 +1.5
690,753 + MPMX19_03336 0.65 -0.5
690,753 + MPMX19_03336 0.65 -1.2
690,753 + MPMX19_03336 0.65 -0.3
690,753 + MPMX19_03336 0.65 +0.2
690,754 - MPMX19_03336 0.65 -1.3
690,754 - MPMX19_03336 0.65 -1.6
690,870 + MPMX19_03336 0.76 +0.8
690,870 + MPMX19_03336 0.76 -0.8
690,871 - MPMX19_03336 0.76 -1.8
691,041 + -0.3
691,041 + -0.7
691,042 - -0.6
691,042 - -1.3
691,272 + +0.5
691,272 + -1.6
691,272 + -0.8
691,273 - -0.2
691,273 - -1.2
691,273 - -0.6
691,273 - -0.1
691,273 - -2.3
691,273 - -0.3
691,273 - +0.3
691,323 + -0.1
691,323 + -2.1
691,324 - -1.0
691,324 - -1.9
691,324 - +0.9
691,324 - -0.6
691,324 - +0.1
691,417 + MPMX19_03337 0.13 -3.2
691,417 + MPMX19_03337 0.13 +0.5
691,417 + MPMX19_03337 0.13 -0.1
691,418 - MPMX19_03337 0.13 -0.1
691,418 - MPMX19_03337 0.13 -0.3
691,434 + MPMX19_03337 0.14 -0.9
691,434 + MPMX19_03337 0.14 -0.9
691,434 + MPMX19_03337 0.14 -1.3
691,434 + MPMX19_03337 0.14 +0.2
691,434 + MPMX19_03337 0.14 +0.8
691,434 + MPMX19_03337 0.14 +0.5
691,434 + MPMX19_03337 0.14 +0.3
691,434 + MPMX19_03337 0.14 +0.1
691,435 - MPMX19_03337 0.14 -1.2
691,435 - MPMX19_03337 0.14 -0.5
691,435 - MPMX19_03337 0.14 +0.3
691,435 - MPMX19_03337 0.14 -0.4
691,518 + MPMX19_03337 0.19 -1.1
691,518 + MPMX19_03337 0.19 -0.6
691,578 + MPMX19_03337 0.23 +0.5
691,578 + MPMX19_03337 0.23 -0.1
691,578 + MPMX19_03337 0.23 -0.5
691,579 - MPMX19_03337 0.23 +1.2
691,579 - MPMX19_03337 0.23 -0.7
691,579 - MPMX19_03337 0.23 +0.2
691,690 - MPMX19_03337 0.30 +0.1
691,690 - MPMX19_03337 0.30 -0.1
691,809 + MPMX19_03337 0.37 +0.2
691,809 + MPMX19_03337 0.37 +0.0
691,809 + MPMX19_03337 0.37 -0.8
691,839 + MPMX19_03337 0.39 -0.6
691,839 + MPMX19_03337 0.39 +2.1
691,962 + MPMX19_03337 0.46 +0.5
691,963 - MPMX19_03337 0.46 -0.8
691,963 - MPMX19_03337 0.46 -2.1
691,965 + MPMX19_03337 0.47 -0.9
691,965 + MPMX19_03337 0.47 +0.8
691,965 + MPMX19_03337 0.47 -1.2
691,965 + MPMX19_03337 0.47 -0.6
691,965 + MPMX19_03337 0.47 -1.6
691,965 + MPMX19_03337 0.47 -0.1
691,965 + MPMX19_03337 0.47 -0.1
691,966 - MPMX19_03337 0.47 -1.1
691,966 - MPMX19_03337 0.47 -0.7
691,966 - MPMX19_03337 0.47 +0.5
691,966 - MPMX19_03337 0.47 -0.6
691,966 - MPMX19_03337 0.47 +0.5
691,966 - MPMX19_03337 0.47 -0.3
691,966 - MPMX19_03337 0.47 +0.7
691,966 - MPMX19_03337 0.47 +0.6
691,968 + MPMX19_03337 0.47 +0.9
691,968 + MPMX19_03337 0.47 -0.9
691,968 + MPMX19_03337 0.47 -1.1
691,968 + MPMX19_03337 0.47 -0.9
691,968 + MPMX19_03337 0.47 +0.3
691,968 + MPMX19_03337 0.47 -1.6
691,968 + MPMX19_03337 0.47 -0.7
691,969 - MPMX19_03337 0.47 -0.3
691,969 - MPMX19_03337 0.47 -0.4
691,969 - MPMX19_03337 0.47 -1.1
691,969 - MPMX19_03337 0.47 +0.0
691,969 - MPMX19_03337 0.47 +2.0
691,969 - MPMX19_03337 0.47 -1.0
691,969 - MPMX19_03337 0.47 -0.5
692,049 + MPMX19_03337 0.52 -0.6
692,049 + MPMX19_03337 0.52 +0.5
692,049 + MPMX19_03337 0.52 -1.1
692,049 + MPMX19_03337 0.52 -0.2
692,050 - MPMX19_03337 0.52 -0.1
692,050 - MPMX19_03337 0.52 -0.3
692,050 - MPMX19_03337 0.52 -0.6
692,050 - MPMX19_03337 0.52 +0.2
692,050 - MPMX19_03337 0.52 +0.1

Or see this region's nucleotide sequence