Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03335

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03334 and MPMX19_03335 are separated by 183 nucleotidesMPMX19_03335 and MPMX19_03336 are separated by 43 nucleotides MPMX19_03334: MPMX19_03334 - Alanine racemase 1, at 688,234 to 689,343 _03334 MPMX19_03335: MPMX19_03335 - hypothetical protein, at 689,527 to 690,003 _03335 MPMX19_03336: MPMX19_03336 - hypothetical protein, at 690,047 to 691,135 _03336 Position (kb) 689 690 691Strain fitness (log2 ratio) -2 -1 0 1at 688.532 kb on + strand, within MPMX19_03334at 688.532 kb on + strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.626 kb on - strand, within MPMX19_03334at 688.740 kb on - strand, within MPMX19_03334at 688.765 kb on - strand, within MPMX19_03334at 688.765 kb on - strand, within MPMX19_03334at 689.294 kb on + strandat 689.294 kb on + strandat 689.294 kb on + strandat 689.294 kb on + strandat 689.295 kb on - strandat 689.295 kb on - strandat 689.382 kb on + strandat 689.383 kb on - strandat 689.421 kb on + strandat 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 689.730 kb on - strand, within MPMX19_03335at 690.024 kb on + strandat 690.024 kb on + strandat 690.105 kb on + strandat 690.105 kb on + strandat 690.106 kb on - strandat 690.106 kb on - strandat 690.106 kb on - strandat 690.204 kb on + strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.205 kb on - strand, within MPMX19_03336at 690.387 kb on + strand, within MPMX19_03336at 690.504 kb on + strand, within MPMX19_03336at 690.504 kb on + strand, within MPMX19_03336at 690.543 kb on + strand, within MPMX19_03336at 690.630 kb on + strand, within MPMX19_03336at 690.631 kb on - strand, within MPMX19_03336at 690.645 kb on + strand, within MPMX19_03336at 690.646 kb on - strand, within MPMX19_03336at 690.672 kb on + strand, within MPMX19_03336at 690.672 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.754 kb on - strand, within MPMX19_03336at 690.754 kb on - strand, within MPMX19_03336at 690.870 kb on + strand, within MPMX19_03336at 690.870 kb on + strand, within MPMX19_03336at 690.871 kb on - strand, within MPMX19_03336

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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688,532 + MPMX19_03334 0.27 +0.1
688,532 + MPMX19_03334 0.27 -0.8
688,533 - MPMX19_03334 0.27 -0.5
688,533 - MPMX19_03334 0.27 -1.3
688,533 - MPMX19_03334 0.27 -0.7
688,626 - MPMX19_03334 0.35 -1.1
688,740 - MPMX19_03334 0.46 +1.3
688,765 - MPMX19_03334 0.48 -1.2
688,765 - MPMX19_03334 0.48 +0.8
689,294 + -0.9
689,294 + -0.2
689,294 + +0.5
689,294 + -1.5
689,295 - -0.5
689,295 - -1.9
689,382 + -0.3
689,383 - -2.3
689,421 + +0.3
689,730 - MPMX19_03335 0.43 +0.8
689,730 - MPMX19_03335 0.43 -0.1
689,730 - MPMX19_03335 0.43 -0.8
689,730 - MPMX19_03335 0.43 +0.3
689,730 - MPMX19_03335 0.43 -1.8
689,730 - MPMX19_03335 0.43 -2.6
689,730 - MPMX19_03335 0.43 -1.3
690,024 + -0.3
690,024 + -0.2
690,105 + +0.2
690,105 + +0.1
690,106 - -0.4
690,106 - -0.5
690,106 - +0.3
690,204 + MPMX19_03336 0.14 +0.2
690,205 - MPMX19_03336 0.15 +1.3
690,205 - MPMX19_03336 0.15 -0.3
690,205 - MPMX19_03336 0.15 +0.8
690,387 + MPMX19_03336 0.31 -0.5
690,504 + MPMX19_03336 0.42 -0.6
690,504 + MPMX19_03336 0.42 +0.4
690,543 + MPMX19_03336 0.46 -0.8
690,630 + MPMX19_03336 0.54 +1.5
690,631 - MPMX19_03336 0.54 -0.4
690,645 + MPMX19_03336 0.55 +0.1
690,646 - MPMX19_03336 0.55 -0.5
690,672 + MPMX19_03336 0.57 -0.6
690,672 + MPMX19_03336 0.57 +1.1
690,753 + MPMX19_03336 0.65 -0.1
690,753 + MPMX19_03336 0.65 +0.1
690,753 + MPMX19_03336 0.65 +0.9
690,753 + MPMX19_03336 0.65 -0.3
690,753 + MPMX19_03336 0.65 +1.5
690,753 + MPMX19_03336 0.65 -0.5
690,753 + MPMX19_03336 0.65 -1.2
690,753 + MPMX19_03336 0.65 -0.3
690,753 + MPMX19_03336 0.65 +0.2
690,754 - MPMX19_03336 0.65 -1.3
690,754 - MPMX19_03336 0.65 -1.6
690,870 + MPMX19_03336 0.76 +0.8
690,870 + MPMX19_03336 0.76 -0.8
690,871 - MPMX19_03336 0.76 -1.8

Or see this region's nucleotide sequence