Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03286

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03285 and MPMX19_03286 are separated by 212 nucleotidesMPMX19_03286 and MPMX19_03287 are separated by 10 nucleotides MPMX19_03285: MPMX19_03285 - Apulose-4-phosphate transketolase subunit A, at 631,044 to 632,012 _03285 MPMX19_03286: MPMX19_03286 - Putrescine--pyruvate aminotransferase, at 632,225 to 633,604 _03286 MPMX19_03287: MPMX19_03287 - 6-aminohexanoate-cyclic-dimer hydrolase, at 633,615 to 635,042 _03287 Position (kb) 632 633 634Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 631.384 kb on + strand, within MPMX19_03285at 631.384 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.645 kb on + strand, within MPMX19_03285at 631.645 kb on + strand, within MPMX19_03285at 631.645 kb on + strand, within MPMX19_03285at 631.646 kb on - strand, within MPMX19_03285at 631.646 kb on - strand, within MPMX19_03285at 631.697 kb on - strand, within MPMX19_03285at 631.697 kb on - strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.787 kb on - strand, within MPMX19_03285at 631.787 kb on - strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.790 kb on - strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.832 kb on - strand, within MPMX19_03285at 632.363 kb on + strand, within MPMX19_03286at 632.363 kb on + strand, within MPMX19_03286at 632.363 kb on + strand, within MPMX19_03286at 632.364 kb on - strand, within MPMX19_03286at 632.364 kb on - strand, within MPMX19_03286at 632.365 kb on + strand, within MPMX19_03286at 632.366 kb on - strand, within MPMX19_03286at 632.462 kb on + strand, within MPMX19_03286at 632.462 kb on + strand, within MPMX19_03286at 632.462 kb on + strand, within MPMX19_03286at 632.462 kb on + strand, within MPMX19_03286at 632.462 kb on + strand, within MPMX19_03286at 632.462 kb on + strand, within MPMX19_03286at 632.462 kb on + strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.463 kb on - strand, within MPMX19_03286at 632.606 kb on + strand, within MPMX19_03286at 632.606 kb on + strand, within MPMX19_03286at 632.606 kb on + strand, within MPMX19_03286at 632.607 kb on - strand, within MPMX19_03286at 632.607 kb on - strand, within MPMX19_03286at 632.607 kb on - strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.609 kb on + strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.610 kb on - strand, within MPMX19_03286at 632.810 kb on + strand, within MPMX19_03286at 632.811 kb on - strand, within MPMX19_03286at 632.811 kb on - strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.933 kb on + strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 632.934 kb on - strand, within MPMX19_03286at 633.131 kb on + strand, within MPMX19_03286at 633.131 kb on + strand, within MPMX19_03286at 633.131 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.188 kb on + strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.189 kb on - strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.239 kb on + strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.240 kb on - strand, within MPMX19_03286at 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.503 kb on + strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.504 kb on - strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.621 kb on + strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.622 kb on - strandat 633.834 kb on + strand, within MPMX19_03287at 633.835 kb on - strand, within MPMX19_03287at 633.852 kb on - strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.311 kb on + strand, within MPMX19_03287at 634.312 kb on - strand, within MPMX19_03287at 634.312 kb on - strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.515 kb on + strand, within MPMX19_03287at 634.516 kb on - strand, within MPMX19_03287at 634.516 kb on - strand, within MPMX19_03287at 634.527 kb on + strand, within MPMX19_03287at 634.527 kb on + strand, within MPMX19_03287

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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631,384 + MPMX19_03285 0.35 +0.0
631,384 + MPMX19_03285 0.35 +0.8
631,495 + MPMX19_03285 0.47 +0.3
631,495 + MPMX19_03285 0.47 +0.6
631,495 + MPMX19_03285 0.47 +0.4
631,495 + MPMX19_03285 0.47 -0.8
631,495 + MPMX19_03285 0.47 +0.3
631,495 + MPMX19_03285 0.47 -0.1
631,495 + MPMX19_03285 0.47 -1.9
631,495 + MPMX19_03285 0.47 +0.4
631,495 + MPMX19_03285 0.47 -0.0
631,495 + MPMX19_03285 0.47 +0.1
631,495 + MPMX19_03285 0.47 -0.3
631,496 - MPMX19_03285 0.47 +0.4
631,496 - MPMX19_03285 0.47 +0.2
631,496 - MPMX19_03285 0.47 +1.6
631,496 - MPMX19_03285 0.47 +1.9
631,496 - MPMX19_03285 0.47 -0.9
631,496 - MPMX19_03285 0.47 -1.4
631,496 - MPMX19_03285 0.47 +1.0
631,496 - MPMX19_03285 0.47 -1.0
631,496 - MPMX19_03285 0.47 -1.0
631,496 - MPMX19_03285 0.47 -0.3
631,645 + MPMX19_03285 0.62 +1.0
631,645 + MPMX19_03285 0.62 -0.0
631,645 + MPMX19_03285 0.62 +1.7
631,646 - MPMX19_03285 0.62 +0.3
631,646 - MPMX19_03285 0.62 +0.4
631,697 - MPMX19_03285 0.67 +0.3
631,697 - MPMX19_03285 0.67 -1.4
631,786 + MPMX19_03285 0.77 -1.6
631,786 + MPMX19_03285 0.77 +0.2
631,786 + MPMX19_03285 0.77 -1.4
631,786 + MPMX19_03285 0.77 -1.3
631,786 + MPMX19_03285 0.77 -0.6
631,786 + MPMX19_03285 0.77 +1.4
631,786 + MPMX19_03285 0.77 -1.4
631,787 - MPMX19_03285 0.77 +0.2
631,787 - MPMX19_03285 0.77 +0.2
631,789 + MPMX19_03285 0.77 -0.2
631,789 + MPMX19_03285 0.77 -0.0
631,789 + MPMX19_03285 0.77 -1.1
631,789 + MPMX19_03285 0.77 +0.4
631,789 + MPMX19_03285 0.77 +0.4
631,789 + MPMX19_03285 0.77 -0.1
631,789 + MPMX19_03285 0.77 -0.6
631,789 + MPMX19_03285 0.77 +1.2
631,790 - MPMX19_03285 0.77 -0.8
631,831 + MPMX19_03285 0.81 -0.8
631,831 + MPMX19_03285 0.81 +1.0
631,831 + MPMX19_03285 0.81 +0.1
631,831 + MPMX19_03285 0.81 +1.3
631,832 - MPMX19_03285 0.81 +0.1
632,363 + MPMX19_03286 0.10 +1.1
632,363 + MPMX19_03286 0.10 -0.5
632,363 + MPMX19_03286 0.10 +0.2
632,364 - MPMX19_03286 0.10 +1.0
632,364 - MPMX19_03286 0.10 -0.8
632,365 + MPMX19_03286 0.10 +0.2
632,366 - MPMX19_03286 0.10 -0.7
632,462 + MPMX19_03286 0.17 -0.1
632,462 + MPMX19_03286 0.17 +0.7
632,462 + MPMX19_03286 0.17 +0.9
632,462 + MPMX19_03286 0.17 -0.5
632,462 + MPMX19_03286 0.17 +0.2
632,462 + MPMX19_03286 0.17 +0.4
632,462 + MPMX19_03286 0.17 +0.4
632,463 - MPMX19_03286 0.17 +0.6
632,463 - MPMX19_03286 0.17 +0.1
632,463 - MPMX19_03286 0.17 +1.0
632,463 - MPMX19_03286 0.17 +0.4
632,463 - MPMX19_03286 0.17 -0.4
632,463 - MPMX19_03286 0.17 -0.1
632,463 - MPMX19_03286 0.17 +0.7
632,463 - MPMX19_03286 0.17 +1.3
632,463 - MPMX19_03286 0.17 -0.1
632,463 - MPMX19_03286 0.17 +0.1
632,606 + MPMX19_03286 0.28 -1.9
632,606 + MPMX19_03286 0.28 -0.5
632,606 + MPMX19_03286 0.28 -0.9
632,607 - MPMX19_03286 0.28 -0.8
632,607 - MPMX19_03286 0.28 -0.4
632,607 - MPMX19_03286 0.28 -0.5
632,609 + MPMX19_03286 0.28 +0.1
632,609 + MPMX19_03286 0.28 -0.2
632,609 + MPMX19_03286 0.28 -0.0
632,609 + MPMX19_03286 0.28 -0.1
632,609 + MPMX19_03286 0.28 -0.4
632,609 + MPMX19_03286 0.28 +1.9
632,609 + MPMX19_03286 0.28 +0.2
632,609 + MPMX19_03286 0.28 -0.9
632,609 + MPMX19_03286 0.28 -0.9
632,610 - MPMX19_03286 0.28 +0.3
632,610 - MPMX19_03286 0.28 -1.3
632,610 - MPMX19_03286 0.28 +0.5
632,610 - MPMX19_03286 0.28 -1.3
632,610 - MPMX19_03286 0.28 +0.3
632,610 - MPMX19_03286 0.28 -0.0
632,610 - MPMX19_03286 0.28 +1.3
632,610 - MPMX19_03286 0.28 +1.3
632,810 + MPMX19_03286 0.42 +0.6
632,811 - MPMX19_03286 0.42 -1.4
632,811 - MPMX19_03286 0.42 -0.2
632,933 + MPMX19_03286 0.51 +0.0
632,933 + MPMX19_03286 0.51 -3.0
632,933 + MPMX19_03286 0.51 -0.1
632,933 + MPMX19_03286 0.51 -0.3
632,933 + MPMX19_03286 0.51 +1.2
632,933 + MPMX19_03286 0.51 +0.6
632,933 + MPMX19_03286 0.51 -0.9
632,934 - MPMX19_03286 0.51 +0.6
632,934 - MPMX19_03286 0.51 -1.8
632,934 - MPMX19_03286 0.51 +0.6
632,934 - MPMX19_03286 0.51 -0.7
632,934 - MPMX19_03286 0.51 -0.3
633,131 + MPMX19_03286 0.66 -1.8
633,131 + MPMX19_03286 0.66 +1.6
633,131 + MPMX19_03286 0.66 +0.1
633,188 + MPMX19_03286 0.70 -1.4
633,188 + MPMX19_03286 0.70 +0.6
633,188 + MPMX19_03286 0.70 +0.6
633,188 + MPMX19_03286 0.70 +0.5
633,189 - MPMX19_03286 0.70 -0.4
633,189 - MPMX19_03286 0.70 -0.9
633,189 - MPMX19_03286 0.70 -0.9
633,189 - MPMX19_03286 0.70 -1.0
633,189 - MPMX19_03286 0.70 +0.1
633,189 - MPMX19_03286 0.70 +1.6
633,239 + MPMX19_03286 0.73 -1.1
633,239 + MPMX19_03286 0.73 -1.4
633,239 + MPMX19_03286 0.73 +0.1
633,239 + MPMX19_03286 0.73 -0.0
633,239 + MPMX19_03286 0.73 -0.0
633,239 + MPMX19_03286 0.73 +0.0
633,240 - MPMX19_03286 0.74 +0.2
633,240 - MPMX19_03286 0.74 +0.7
633,240 - MPMX19_03286 0.74 +1.2
633,240 - MPMX19_03286 0.74 +0.4
633,503 + -0.6
633,503 + +0.1
633,503 + -1.6
633,503 + +0.0
633,503 + -1.0
633,503 + +0.1
633,504 - -1.0
633,504 - -1.6
633,504 - +0.6
633,504 - +0.1
633,504 - -0.4
633,504 - +0.1
633,504 - +0.6
633,504 - -1.3
633,621 + +1.2
633,621 + +0.2
633,621 + -1.0
633,621 + -0.9
633,621 + +0.6
633,621 + +1.9
633,621 + -1.0
633,621 + +0.4
633,621 + -2.0
633,621 + -0.6
633,622 - +0.7
633,622 - -0.9
633,622 - +0.2
633,622 - -1.0
633,622 - +0.2
633,622 - -0.6
633,622 - +0.2
633,622 - -0.1
633,622 - -0.6
633,834 + MPMX19_03287 0.15 +0.8
633,835 - MPMX19_03287 0.15 -1.3
633,852 - MPMX19_03287 0.17 -0.1
634,311 + MPMX19_03287 0.49 -0.3
634,311 + MPMX19_03287 0.49 +1.2
634,311 + MPMX19_03287 0.49 -1.0
634,312 - MPMX19_03287 0.49 -0.4
634,312 - MPMX19_03287 0.49 -0.4
634,515 + MPMX19_03287 0.63 -1.4
634,515 + MPMX19_03287 0.63 +0.1
634,515 + MPMX19_03287 0.63 +0.1
634,515 + MPMX19_03287 0.63 -0.4
634,515 + MPMX19_03287 0.63 -0.0
634,515 + MPMX19_03287 0.63 +0.4
634,516 - MPMX19_03287 0.63 +0.1
634,516 - MPMX19_03287 0.63 -1.3
634,527 + MPMX19_03287 0.64 +0.4
634,527 + MPMX19_03287 0.64 -0.0

Or see this region's nucleotide sequence