Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03208

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03207 and MPMX19_03208 are separated by 365 nucleotidesMPMX19_03208 and MPMX19_03209 are separated by 219 nucleotides MPMX19_03207: MPMX19_03207 - hypothetical protein, at 505,821 to 506,690 _03207 MPMX19_03208: MPMX19_03208 - Non-heme chloroperoxidase, at 507,056 to 507,898 _03208 MPMX19_03209: MPMX19_03209 - Purine ribonucleoside efflux pump NepI, at 508,118 to 509,302 _03209 Position (kb) 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 506.110 kb on + strand, within MPMX19_03207at 506.110 kb on + strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.159 kb on + strand, within MPMX19_03207at 506.159 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.253 kb on + strand, within MPMX19_03207at 506.253 kb on + strand, within MPMX19_03207at 506.253 kb on + strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.414 kb on - strand, within MPMX19_03207at 506.422 kb on - strand, within MPMX19_03207at 506.721 kb on - strandat 506.721 kb on - strandat 506.721 kb on - strandat 506.721 kb on - strandat 506.745 kb on + strandat 506.745 kb on + strandat 506.745 kb on + strandat 506.745 kb on + strandat 506.745 kb on + strandat 506.745 kb on + strandat 506.745 kb on + strandat 506.746 kb on - strandat 506.746 kb on - strandat 506.746 kb on - strandat 506.746 kb on - strandat 506.746 kb on - strandat 506.755 kb on + strandat 506.756 kb on - strandat 506.814 kb on + strandat 506.815 kb on - strandat 506.815 kb on - strandat 506.815 kb on - strandat 506.854 kb on + strandat 506.854 kb on + strandat 506.855 kb on - strandat 506.855 kb on - strandat 506.855 kb on - strandat 506.855 kb on - strandat 506.855 kb on - strandat 506.855 kb on - strandat 507.094 kb on + strandat 507.094 kb on + strandat 507.094 kb on + strandat 507.095 kb on - strandat 507.284 kb on + strand, within MPMX19_03208at 507.284 kb on + strand, within MPMX19_03208at 507.284 kb on + strand, within MPMX19_03208at 507.285 kb on - strand, within MPMX19_03208at 507.285 kb on - strand, within MPMX19_03208at 507.285 kb on - strand, within MPMX19_03208at 507.285 kb on - strand, within MPMX19_03208at 507.285 kb on - strand, within MPMX19_03208at 507.285 kb on - strand, within MPMX19_03208at 507.285 kb on - strand, within MPMX19_03208at 507.340 kb on + strand, within MPMX19_03208at 507.341 kb on - strand, within MPMX19_03208at 507.377 kb on + strand, within MPMX19_03208at 507.377 kb on + strand, within MPMX19_03208at 507.378 kb on - strand, within MPMX19_03208at 507.378 kb on - strand, within MPMX19_03208at 507.378 kb on - strand, within MPMX19_03208at 507.378 kb on - strand, within MPMX19_03208at 507.390 kb on - strand, within MPMX19_03208at 507.390 kb on - strand, within MPMX19_03208at 507.466 kb on + strand, within MPMX19_03208at 507.467 kb on - strand, within MPMX19_03208at 507.467 kb on - strand, within MPMX19_03208at 507.497 kb on - strand, within MPMX19_03208at 507.497 kb on - strand, within MPMX19_03208at 507.566 kb on + strand, within MPMX19_03208at 507.566 kb on + strand, within MPMX19_03208at 507.566 kb on + strand, within MPMX19_03208at 507.566 kb on + strand, within MPMX19_03208at 507.566 kb on + strand, within MPMX19_03208at 507.567 kb on - strand, within MPMX19_03208at 507.567 kb on - strand, within MPMX19_03208at 507.567 kb on - strand, within MPMX19_03208at 507.656 kb on + strand, within MPMX19_03208at 507.656 kb on + strand, within MPMX19_03208at 507.657 kb on - strand, within MPMX19_03208at 507.657 kb on - strand, within MPMX19_03208at 507.657 kb on - strand, within MPMX19_03208at 507.778 kb on - strand, within MPMX19_03208at 507.819 kb on - strandat 507.839 kb on - strandat 508.005 kb on + strandat 508.005 kb on + strandat 508.005 kb on + strandat 508.005 kb on + strandat 508.005 kb on + strandat 508.005 kb on + strandat 508.006 kb on - strandat 508.006 kb on - strandat 508.006 kb on - strandat 508.006 kb on - strandat 508.006 kb on - strandat 508.006 kb on - strandat 508.802 kb on + strand, within MPMX19_03209at 508.802 kb on + strand, within MPMX19_03209at 508.802 kb on + strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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506,110 + MPMX19_03207 0.33 +0.9
506,110 + MPMX19_03207 0.33 -0.3
506,111 - MPMX19_03207 0.33 -0.6
506,111 - MPMX19_03207 0.33 -0.6
506,111 - MPMX19_03207 0.33 -0.7
506,111 - MPMX19_03207 0.33 -0.8
506,111 - MPMX19_03207 0.33 +1.0
506,125 + MPMX19_03207 0.35 -1.2
506,125 + MPMX19_03207 0.35 -0.0
506,125 + MPMX19_03207 0.35 +0.3
506,125 + MPMX19_03207 0.35 -1.0
506,125 + MPMX19_03207 0.35 +1.3
506,125 + MPMX19_03207 0.35 +0.6
506,125 + MPMX19_03207 0.35 -1.0
506,125 + MPMX19_03207 0.35 -1.1
506,125 + MPMX19_03207 0.35 +0.0
506,125 + MPMX19_03207 0.35 -0.9
506,125 + MPMX19_03207 0.35 -0.8
506,125 + MPMX19_03207 0.35 +0.0
506,125 + MPMX19_03207 0.35 -0.5
506,125 + MPMX19_03207 0.35 -1.3
506,125 + MPMX19_03207 0.35 +0.7
506,125 + MPMX19_03207 0.35 -1.4
506,125 + MPMX19_03207 0.35 -1.5
506,125 + MPMX19_03207 0.35 +0.0
506,125 + MPMX19_03207 0.35 -0.8
506,125 + MPMX19_03207 0.35 -0.2
506,125 + MPMX19_03207 0.35 +0.7
506,125 + MPMX19_03207 0.35 -0.4
506,125 + MPMX19_03207 0.35 +0.9
506,126 - MPMX19_03207 0.35 -0.8
506,126 - MPMX19_03207 0.35 -2.4
506,126 - MPMX19_03207 0.35 -1.1
506,126 - MPMX19_03207 0.35 +0.8
506,126 - MPMX19_03207 0.35 +0.3
506,126 - MPMX19_03207 0.35 +0.5
506,126 - MPMX19_03207 0.35 +0.1
506,126 - MPMX19_03207 0.35 +1.0
506,126 - MPMX19_03207 0.35 +1.3
506,126 - MPMX19_03207 0.35 -1.7
506,126 - MPMX19_03207 0.35 +0.7
506,126 - MPMX19_03207 0.35 -0.1
506,126 - MPMX19_03207 0.35 +2.4
506,126 - MPMX19_03207 0.35 +1.0
506,126 - MPMX19_03207 0.35 -0.0
506,126 - MPMX19_03207 0.35 -0.4
506,126 - MPMX19_03207 0.35 +0.1
506,126 - MPMX19_03207 0.35 -0.2
506,159 + MPMX19_03207 0.39 +0.2
506,159 + MPMX19_03207 0.39 -0.3
506,249 + MPMX19_03207 0.49 -0.6
506,249 + MPMX19_03207 0.49 +0.2
506,249 + MPMX19_03207 0.49 +2.3
506,249 + MPMX19_03207 0.49 -0.4
506,249 + MPMX19_03207 0.49 -0.2
506,249 + MPMX19_03207 0.49 +0.2
506,249 + MPMX19_03207 0.49 -0.4
506,250 - MPMX19_03207 0.49 -0.0
506,250 - MPMX19_03207 0.49 -1.0
506,250 - MPMX19_03207 0.49 +1.7
506,250 - MPMX19_03207 0.49 -1.0
506,250 - MPMX19_03207 0.49 -0.9
506,250 - MPMX19_03207 0.49 -1.0
506,253 + MPMX19_03207 0.50 -2.4
506,253 + MPMX19_03207 0.50 +0.3
506,253 + MPMX19_03207 0.50 -0.6
506,254 - MPMX19_03207 0.50 -1.4
506,254 - MPMX19_03207 0.50 -0.8
506,254 - MPMX19_03207 0.50 +0.6
506,254 - MPMX19_03207 0.50 +0.7
506,392 + MPMX19_03207 0.66 -2.8
506,392 + MPMX19_03207 0.66 +1.0
506,392 + MPMX19_03207 0.66 -1.4
506,392 + MPMX19_03207 0.66 +0.7
506,392 + MPMX19_03207 0.66 -0.4
506,392 + MPMX19_03207 0.66 +0.1
506,393 - MPMX19_03207 0.66 -0.4
506,393 - MPMX19_03207 0.66 -2.3
506,393 - MPMX19_03207 0.66 +0.0
506,393 - MPMX19_03207 0.66 +0.3
506,393 - MPMX19_03207 0.66 +0.2
506,393 - MPMX19_03207 0.66 -0.3
506,393 - MPMX19_03207 0.66 -0.0
506,393 - MPMX19_03207 0.66 -0.0
506,414 - MPMX19_03207 0.68 +1.1
506,422 - MPMX19_03207 0.69 -0.1
506,721 - -1.6
506,721 - +0.2
506,721 - +0.4
506,721 - +0.6
506,745 + -1.6
506,745 + -0.3
506,745 + -0.7
506,745 + -0.3
506,745 + -0.0
506,745 + -1.6
506,745 + -0.3
506,746 - +0.6
506,746 - -1.5
506,746 - -2.6
506,746 - -0.4
506,746 - +0.6
506,755 + +0.0
506,756 - -0.3
506,814 + +0.2
506,815 - -1.3
506,815 - +0.4
506,815 - -0.0
506,854 + -0.3
506,854 + -0.8
506,855 - -1.8
506,855 - -1.2
506,855 - +1.1
506,855 - -0.8
506,855 - +0.8
506,855 - -1.0
507,094 + -1.3
507,094 + -0.8
507,094 + -0.9
507,095 - +0.2
507,284 + MPMX19_03208 0.27 -0.0
507,284 + MPMX19_03208 0.27 -1.3
507,284 + MPMX19_03208 0.27 -0.0
507,285 - MPMX19_03208 0.27 -0.2
507,285 - MPMX19_03208 0.27 -0.8
507,285 - MPMX19_03208 0.27 -0.1
507,285 - MPMX19_03208 0.27 +0.6
507,285 - MPMX19_03208 0.27 -1.8
507,285 - MPMX19_03208 0.27 -1.3
507,285 - MPMX19_03208 0.27 -1.4
507,340 + MPMX19_03208 0.34 +0.9
507,341 - MPMX19_03208 0.34 -2.7
507,377 + MPMX19_03208 0.38 -1.3
507,377 + MPMX19_03208 0.38 -0.6
507,378 - MPMX19_03208 0.38 +0.2
507,378 - MPMX19_03208 0.38 -1.5
507,378 - MPMX19_03208 0.38 -0.6
507,378 - MPMX19_03208 0.38 -0.1
507,390 - MPMX19_03208 0.40 +0.7
507,390 - MPMX19_03208 0.40 -0.7
507,466 + MPMX19_03208 0.49 +0.3
507,467 - MPMX19_03208 0.49 -2.6
507,467 - MPMX19_03208 0.49 -1.6
507,497 - MPMX19_03208 0.52 +0.9
507,497 - MPMX19_03208 0.52 -0.0
507,566 + MPMX19_03208 0.60 +1.0
507,566 + MPMX19_03208 0.60 -0.4
507,566 + MPMX19_03208 0.60 -0.8
507,566 + MPMX19_03208 0.60 -0.7
507,566 + MPMX19_03208 0.60 -1.8
507,567 - MPMX19_03208 0.61 -1.3
507,567 - MPMX19_03208 0.61 +0.6
507,567 - MPMX19_03208 0.61 +1.6
507,656 + MPMX19_03208 0.71 +0.7
507,656 + MPMX19_03208 0.71 -0.7
507,657 - MPMX19_03208 0.71 -1.4
507,657 - MPMX19_03208 0.71 -0.0
507,657 - MPMX19_03208 0.71 -1.2
507,778 - MPMX19_03208 0.86 +0.1
507,819 - -0.5
507,839 - -1.7
508,005 + -0.4
508,005 + -0.9
508,005 + +2.3
508,005 + +0.5
508,005 + -0.7
508,005 + -0.0
508,006 - -0.0
508,006 - -1.6
508,006 - +0.2
508,006 - +2.0
508,006 - -0.0
508,006 - -0.8
508,802 + MPMX19_03209 0.58 -1.8
508,802 + MPMX19_03209 0.58 +0.6
508,802 + MPMX19_03209 0.58 +0.3
508,803 - MPMX19_03209 0.58 +0.7
508,803 - MPMX19_03209 0.58 -1.0
508,803 - MPMX19_03209 0.58 -0.2
508,803 - MPMX19_03209 0.58 -1.7
508,803 - MPMX19_03209 0.58 -0.3
508,803 - MPMX19_03209 0.58 -0.4
508,803 - MPMX19_03209 0.58 +0.1
508,803 - MPMX19_03209 0.58 -0.2
508,808 + MPMX19_03209 0.58 -0.2
508,808 + MPMX19_03209 0.58 -0.7
508,808 + MPMX19_03209 0.58 -0.9
508,808 + MPMX19_03209 0.58 -0.2
508,808 + MPMX19_03209 0.58 -1.2
508,808 + MPMX19_03209 0.58 +0.6
508,809 - MPMX19_03209 0.58 +0.4
508,809 - MPMX19_03209 0.58 -0.2
508,809 - MPMX19_03209 0.58 -1.0
508,809 - MPMX19_03209 0.58 -0.8
508,809 - MPMX19_03209 0.58 -0.2
508,809 - MPMX19_03209 0.58 -1.0
508,809 - MPMX19_03209 0.58 +0.6
508,809 - MPMX19_03209 0.58 -1.9
508,809 - MPMX19_03209 0.58 -1.6
508,877 + MPMX19_03209 0.64 -0.3
508,877 + MPMX19_03209 0.64 -2.0
508,877 + MPMX19_03209 0.64 +0.2
508,877 + MPMX19_03209 0.64 -0.4
508,877 + MPMX19_03209 0.64 +0.6
508,877 + MPMX19_03209 0.64 -0.8
508,877 + MPMX19_03209 0.64 +0.4
508,877 + MPMX19_03209 0.64 +0.6
508,878 - MPMX19_03209 0.64 -0.2
508,878 - MPMX19_03209 0.64 -0.4
508,878 - MPMX19_03209 0.64 +0.7
508,878 - MPMX19_03209 0.64 -0.0
508,878 - MPMX19_03209 0.64 -0.9
508,878 - MPMX19_03209 0.64 -1.3
508,878 - MPMX19_03209 0.64 +0.4
508,878 - MPMX19_03209 0.64 -1.4
508,878 - MPMX19_03209 0.64 +0.4
508,878 - MPMX19_03209 0.64 +0.6
508,878 - MPMX19_03209 0.64 -2.7

Or see this region's nucleotide sequence