Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03094

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03092 and MPMX19_03093 overlap by 4 nucleotidesMPMX19_03093 and MPMX19_03094 overlap by 4 nucleotidesMPMX19_03094 and MPMX19_03095 are separated by 10 nucleotidesMPMX19_03095 and MPMX19_03096 are separated by 13 nucleotidesMPMX19_03096 and MPMX19_03097 overlap by 4 nucleotides MPMX19_03092: MPMX19_03092 - High-affinity zinc uptake system membrane protein ZnuB, at 364,084 to 364,974 _03092 MPMX19_03093: MPMX19_03093 - Manganese import ATP-binding protein ScaC, at 364,971 to 365,711 _03093 MPMX19_03094: MPMX19_03094 - Metal ABC transporter substrate-binding lipoprotein, at 365,708 to 366,625 _03094 MPMX19_03095: MPMX19_03095 - hypothetical protein, at 366,636 to 367,229 _03095 MPMX19_03096: MPMX19_03096 - hypothetical protein, at 367,243 to 367,566 _03096 MPMX19_03097: MPMX19_03097 - hypothetical protein, at 367,563 to 368,036 _03097 Position (kb) 365 366 367Strain fitness (log2 ratio) -2 -1 0 1at 364.727 kb on + strand, within MPMX19_03092at 364.727 kb on + strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.740 kb on - strand, within MPMX19_03092at 364.740 kb on - strand, within MPMX19_03092at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.492 kb on + strand, within MPMX19_03093at 365.787 kb on + strandat 365.787 kb on + strandat 365.788 kb on - strandat 365.817 kb on + strand, within MPMX19_03094at 365.817 kb on + strand, within MPMX19_03094at 365.817 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 366.009 kb on + strand, within MPMX19_03094at 366.009 kb on + strand, within MPMX19_03094at 366.010 kb on - strand, within MPMX19_03094at 366.010 kb on - strand, within MPMX19_03094at 366.010 kb on - strand, within MPMX19_03094at 366.015 kb on + strand, within MPMX19_03094at 366.111 kb on + strand, within MPMX19_03094at 366.111 kb on + strand, within MPMX19_03094at 366.111 kb on + strand, within MPMX19_03094at 366.111 kb on + strand, within MPMX19_03094at 366.111 kb on + strand, within MPMX19_03094at 366.111 kb on + strand, within MPMX19_03094at 366.111 kb on + strand, within MPMX19_03094at 366.112 kb on - strand, within MPMX19_03094at 366.112 kb on - strand, within MPMX19_03094at 366.112 kb on - strand, within MPMX19_03094at 366.112 kb on - strand, within MPMX19_03094at 366.112 kb on - strand, within MPMX19_03094at 366.112 kb on - strand, within MPMX19_03094at 366.132 kb on + strand, within MPMX19_03094at 366.132 kb on + strand, within MPMX19_03094at 366.132 kb on + strand, within MPMX19_03094at 366.132 kb on + strand, within MPMX19_03094at 366.132 kb on + strand, within MPMX19_03094at 366.132 kb on + strand, within MPMX19_03094at 366.132 kb on + strand, within MPMX19_03094at 366.133 kb on - strand, within MPMX19_03094at 366.133 kb on - strand, within MPMX19_03094at 366.133 kb on - strand, within MPMX19_03094at 366.426 kb on + strand, within MPMX19_03094at 366.427 kb on - strand, within MPMX19_03094at 366.427 kb on - strand, within MPMX19_03094at 366.427 kb on - strand, within MPMX19_03094at 366.498 kb on + strand, within MPMX19_03094at 366.499 kb on - strand, within MPMX19_03094at 366.499 kb on - strand, within MPMX19_03094at 366.504 kb on + strand, within MPMX19_03094at 366.504 kb on + strand, within MPMX19_03094at 366.504 kb on + strand, within MPMX19_03094at 366.505 kb on - strand, within MPMX19_03094at 366.505 kb on - strand, within MPMX19_03094at 366.505 kb on - strand, within MPMX19_03094at 366.505 kb on - strand, within MPMX19_03094at 366.505 kb on - strand, within MPMX19_03094at 366.505 kb on - strand, within MPMX19_03094at 366.505 kb on - strand, within MPMX19_03094at 366.507 kb on + strand, within MPMX19_03094at 366.507 kb on + strand, within MPMX19_03094at 366.625 kb on + strandat 366.625 kb on + strandat 366.625 kb on + strandat 366.625 kb on + strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.838 kb on + strand, within MPMX19_03095at 366.838 kb on + strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 367.244 kb on + strandat 367.244 kb on + strandat 367.244 kb on + strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.304 kb on + strand, within MPMX19_03096at 367.304 kb on + strand, within MPMX19_03096at 367.304 kb on + strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.554 kb on + strandat 367.554 kb on + strandat 367.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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364,727 + MPMX19_03092 0.72 -2.5
364,727 + MPMX19_03092 0.72 -0.8
364,728 - MPMX19_03092 0.72 +0.2
364,728 - MPMX19_03092 0.72 -0.3
364,728 - MPMX19_03092 0.72 -0.3
364,728 - MPMX19_03092 0.72 -2.0
364,739 + MPMX19_03092 0.74 +0.1
364,739 + MPMX19_03092 0.74 -0.4
364,739 + MPMX19_03092 0.74 -0.7
364,740 - MPMX19_03092 0.74 +0.4
364,740 - MPMX19_03092 0.74 +1.2
365,473 + MPMX19_03093 0.68 +0.0
365,473 + MPMX19_03093 0.68 -1.0
365,473 + MPMX19_03093 0.68 +0.6
365,473 + MPMX19_03093 0.68 +1.0
365,473 + MPMX19_03093 0.68 -1.6
365,473 + MPMX19_03093 0.68 -1.0
365,474 - MPMX19_03093 0.68 +0.1
365,474 - MPMX19_03093 0.68 -1.6
365,474 - MPMX19_03093 0.68 -0.3
365,474 - MPMX19_03093 0.68 +1.1
365,474 - MPMX19_03093 0.68 +1.1
365,474 - MPMX19_03093 0.68 +0.2
365,492 + MPMX19_03093 0.70 -0.4
365,787 + +1.0
365,787 + -0.3
365,788 - -2.4
365,817 + MPMX19_03094 0.12 -1.4
365,817 + MPMX19_03094 0.12 -0.8
365,817 + MPMX19_03094 0.12 +0.0
365,856 + MPMX19_03094 0.16 +0.2
365,856 + MPMX19_03094 0.16 +0.9
365,856 + MPMX19_03094 0.16 +0.8
365,856 + MPMX19_03094 0.16 -0.7
365,856 + MPMX19_03094 0.16 -0.3
365,856 + MPMX19_03094 0.16 +1.0
365,856 + MPMX19_03094 0.16 -0.3
365,856 + MPMX19_03094 0.16 +0.3
365,856 + MPMX19_03094 0.16 -0.7
365,856 + MPMX19_03094 0.16 -0.7
365,856 + MPMX19_03094 0.16 +0.2
365,857 - MPMX19_03094 0.16 +0.1
365,857 - MPMX19_03094 0.16 -0.5
365,857 - MPMX19_03094 0.16 -0.2
365,857 - MPMX19_03094 0.16 +0.3
365,857 - MPMX19_03094 0.16 +0.4
365,857 - MPMX19_03094 0.16 +0.2
366,009 + MPMX19_03094 0.33 -0.5
366,009 + MPMX19_03094 0.33 +0.1
366,010 - MPMX19_03094 0.33 +0.0
366,010 - MPMX19_03094 0.33 +0.7
366,010 - MPMX19_03094 0.33 -0.4
366,015 + MPMX19_03094 0.33 +0.5
366,111 + MPMX19_03094 0.44 -0.6
366,111 + MPMX19_03094 0.44 -0.5
366,111 + MPMX19_03094 0.44 +0.3
366,111 + MPMX19_03094 0.44 +0.3
366,111 + MPMX19_03094 0.44 -1.4
366,111 + MPMX19_03094 0.44 -0.1
366,111 + MPMX19_03094 0.44 -1.6
366,112 - MPMX19_03094 0.44 +1.2
366,112 - MPMX19_03094 0.44 -1.6
366,112 - MPMX19_03094 0.44 +0.9
366,112 - MPMX19_03094 0.44 +1.3
366,112 - MPMX19_03094 0.44 -0.3
366,112 - MPMX19_03094 0.44 -0.8
366,132 + MPMX19_03094 0.46 -0.3
366,132 + MPMX19_03094 0.46 +0.2
366,132 + MPMX19_03094 0.46 +0.1
366,132 + MPMX19_03094 0.46 +0.3
366,132 + MPMX19_03094 0.46 +1.4
366,132 + MPMX19_03094 0.46 -1.1
366,132 + MPMX19_03094 0.46 -2.3
366,133 - MPMX19_03094 0.46 +1.1
366,133 - MPMX19_03094 0.46 -0.1
366,133 - MPMX19_03094 0.46 +1.0
366,426 + MPMX19_03094 0.78 +0.2
366,427 - MPMX19_03094 0.78 -0.1
366,427 - MPMX19_03094 0.78 -0.6
366,427 - MPMX19_03094 0.78 +0.2
366,498 + MPMX19_03094 0.86 -0.7
366,499 - MPMX19_03094 0.86 -0.9
366,499 - MPMX19_03094 0.86 -0.0
366,504 + MPMX19_03094 0.87 +0.4
366,504 + MPMX19_03094 0.87 +1.0
366,504 + MPMX19_03094 0.87 +1.0
366,505 - MPMX19_03094 0.87 +0.4
366,505 - MPMX19_03094 0.87 -0.4
366,505 - MPMX19_03094 0.87 -0.6
366,505 - MPMX19_03094 0.87 +1.6
366,505 - MPMX19_03094 0.87 +1.1
366,505 - MPMX19_03094 0.87 +1.0
366,505 - MPMX19_03094 0.87 +0.9
366,507 + MPMX19_03094 0.87 -1.7
366,507 + MPMX19_03094 0.87 -0.3
366,625 + +1.0
366,625 + +1.2
366,625 + -0.2
366,625 + -0.7
366,626 - -1.7
366,626 - -0.2
366,626 - -1.2
366,626 - +0.0
366,626 - -0.4
366,838 + MPMX19_03095 0.34 -0.1
366,838 + MPMX19_03095 0.34 +0.7
366,839 - MPMX19_03095 0.34 -0.4
366,839 - MPMX19_03095 0.34 +0.4
366,839 - MPMX19_03095 0.34 +0.2
366,839 - MPMX19_03095 0.34 -0.2
367,244 + +1.6
367,244 + +0.2
367,244 + -0.7
367,245 - -0.6
367,245 - -0.2
367,245 - +0.4
367,245 - -1.0
367,245 - -1.6
367,304 + MPMX19_03096 0.19 -0.4
367,304 + MPMX19_03096 0.19 +1.4
367,304 + MPMX19_03096 0.19 +0.7
367,305 - MPMX19_03096 0.19 +0.5
367,305 - MPMX19_03096 0.19 +0.6
367,305 - MPMX19_03096 0.19 -1.2
367,305 - MPMX19_03096 0.19 -0.7
367,554 + -0.7
367,554 + +0.4
367,555 - +0.6

Or see this region's nucleotide sequence