Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03092

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03090 and MPMX19_03091 are separated by 33 nucleotidesMPMX19_03091 and MPMX19_03092 overlap by 4 nucleotidesMPMX19_03092 and MPMX19_03093 overlap by 4 nucleotidesMPMX19_03093 and MPMX19_03094 overlap by 4 nucleotides MPMX19_03090: MPMX19_03090 - Macrolide export ATP-binding/permease protein MacB, at 361,250 to 363,181 _03090 MPMX19_03091: MPMX19_03091 - hypothetical protein, at 363,215 to 364,087 _03091 MPMX19_03092: MPMX19_03092 - High-affinity zinc uptake system membrane protein ZnuB, at 364,084 to 364,974 _03092 MPMX19_03093: MPMX19_03093 - Manganese import ATP-binding protein ScaC, at 364,971 to 365,711 _03093 MPMX19_03094: MPMX19_03094 - Metal ABC transporter substrate-binding lipoprotein, at 365,708 to 366,625 _03094 Position (kb) 364 365Strain fitness (log2 ratio) -2 -1 0 1at 363.179 kb on + strandat 363.180 kb on - strandat 363.180 kb on - strandat 363.399 kb on + strand, within MPMX19_03091at 363.399 kb on + strand, within MPMX19_03091at 363.399 kb on + strand, within MPMX19_03091at 363.400 kb on - strand, within MPMX19_03091at 363.801 kb on + strand, within MPMX19_03091at 364.382 kb on + strand, within MPMX19_03092at 364.383 kb on - strand, within MPMX19_03092at 364.383 kb on - strand, within MPMX19_03092at 364.383 kb on - strand, within MPMX19_03092at 364.679 kb on + strand, within MPMX19_03092at 364.679 kb on + strand, within MPMX19_03092at 364.679 kb on + strand, within MPMX19_03092at 364.680 kb on - strand, within MPMX19_03092at 364.680 kb on - strand, within MPMX19_03092at 364.727 kb on + strand, within MPMX19_03092at 364.727 kb on + strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.740 kb on - strand, within MPMX19_03092at 364.740 kb on - strand, within MPMX19_03092at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.473 kb on + strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.474 kb on - strand, within MPMX19_03093at 365.492 kb on + strand, within MPMX19_03093at 365.787 kb on + strandat 365.787 kb on + strandat 365.788 kb on - strandat 365.817 kb on + strand, within MPMX19_03094at 365.817 kb on + strand, within MPMX19_03094at 365.817 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.856 kb on + strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094at 365.857 kb on - strand, within MPMX19_03094

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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363,179 + -0.1
363,180 - +0.4
363,180 - -0.5
363,399 + MPMX19_03091 0.21 -2.2
363,399 + MPMX19_03091 0.21 -0.2
363,399 + MPMX19_03091 0.21 -0.4
363,400 - MPMX19_03091 0.21 -1.7
363,801 + MPMX19_03091 0.67 +0.2
364,382 + MPMX19_03092 0.33 +0.8
364,383 - MPMX19_03092 0.34 +1.4
364,383 - MPMX19_03092 0.34 -0.2
364,383 - MPMX19_03092 0.34 +1.0
364,679 + MPMX19_03092 0.67 +0.3
364,679 + MPMX19_03092 0.67 +0.6
364,679 + MPMX19_03092 0.67 +1.0
364,680 - MPMX19_03092 0.67 +0.4
364,680 - MPMX19_03092 0.67 +0.8
364,727 + MPMX19_03092 0.72 -2.5
364,727 + MPMX19_03092 0.72 -0.8
364,728 - MPMX19_03092 0.72 +0.2
364,728 - MPMX19_03092 0.72 -0.3
364,728 - MPMX19_03092 0.72 -0.3
364,728 - MPMX19_03092 0.72 -2.0
364,739 + MPMX19_03092 0.74 +0.1
364,739 + MPMX19_03092 0.74 -0.4
364,739 + MPMX19_03092 0.74 -0.7
364,740 - MPMX19_03092 0.74 +0.4
364,740 - MPMX19_03092 0.74 +1.2
365,473 + MPMX19_03093 0.68 +0.0
365,473 + MPMX19_03093 0.68 -1.0
365,473 + MPMX19_03093 0.68 +0.6
365,473 + MPMX19_03093 0.68 +1.0
365,473 + MPMX19_03093 0.68 -1.6
365,473 + MPMX19_03093 0.68 -1.0
365,474 - MPMX19_03093 0.68 +0.1
365,474 - MPMX19_03093 0.68 -1.6
365,474 - MPMX19_03093 0.68 -0.3
365,474 - MPMX19_03093 0.68 +1.1
365,474 - MPMX19_03093 0.68 +1.1
365,474 - MPMX19_03093 0.68 +0.2
365,492 + MPMX19_03093 0.70 -0.4
365,787 + +1.0
365,787 + -0.3
365,788 - -2.4
365,817 + MPMX19_03094 0.12 -1.4
365,817 + MPMX19_03094 0.12 -0.8
365,817 + MPMX19_03094 0.12 +0.0
365,856 + MPMX19_03094 0.16 +0.2
365,856 + MPMX19_03094 0.16 +0.9
365,856 + MPMX19_03094 0.16 +0.8
365,856 + MPMX19_03094 0.16 -0.7
365,856 + MPMX19_03094 0.16 -0.3
365,856 + MPMX19_03094 0.16 +1.0
365,856 + MPMX19_03094 0.16 -0.3
365,856 + MPMX19_03094 0.16 +0.3
365,856 + MPMX19_03094 0.16 -0.7
365,856 + MPMX19_03094 0.16 -0.7
365,856 + MPMX19_03094 0.16 +0.2
365,857 - MPMX19_03094 0.16 +0.1
365,857 - MPMX19_03094 0.16 -0.5
365,857 - MPMX19_03094 0.16 -0.2
365,857 - MPMX19_03094 0.16 +0.3
365,857 - MPMX19_03094 0.16 +0.4
365,857 - MPMX19_03094 0.16 +0.2

Or see this region's nucleotide sequence