Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03071

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03070 and MPMX19_03071 are separated by 114 nucleotidesMPMX19_03071 and MPMX19_03072 are separated by 61 nucleotidesMPMX19_03072 and MPMX19_03073 are separated by 39 nucleotides MPMX19_03070: MPMX19_03070 - Inner membrane protein YdcO, at 334,864 to 336,096 _03070 MPMX19_03071: MPMX19_03071 - HTH-type transcriptional regulatory protein GabR, at 336,211 to 337,701 _03071 MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870 _03072 MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584 _03073 Position (kb) 336 337 338Strain fitness (log2 ratio) -2 -1 0 1 2 3at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.571 kb on - strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.738 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.804 kb on + strand, within MPMX19_03070at 335.804 kb on + strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.918 kb on - strand, within MPMX19_03070at 335.959 kb on + strand, within MPMX19_03070at 335.959 kb on + strand, within MPMX19_03070at 336.008 kb on + strandat 336.008 kb on + strandat 336.008 kb on + strandat 336.008 kb on + strandat 336.008 kb on + strandat 336.009 kb on + strandat 336.009 kb on - strandat 336.009 kb on - strandat 336.009 kb on - strandat 336.009 kb on - strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.156 kb on + strandat 336.156 kb on + strandat 336.157 kb on - strandat 336.157 kb on - strandat 336.412 kb on + strand, within MPMX19_03071at 336.639 kb on + strand, within MPMX19_03071at 336.760 kb on + strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.895 kb on + strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.983 kb on + strand, within MPMX19_03071at 336.983 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.274 kb on + strand, within MPMX19_03071at 337.275 kb on - strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.376 kb on + strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.525 kb on - strand, within MPMX19_03071at 337.525 kb on - strand, within MPMX19_03071at 337.582 kb on + strandat 337.582 kb on + strandat 337.583 kb on - strandat 337.630 kb on + strandat 337.630 kb on + strandat 337.630 kb on + strandat 337.631 kb on - strandat 337.631 kb on - strandat 337.700 kb on - strandat 337.714 kb on + strandat 337.715 kb on - strandat 337.715 kb on - strandat 337.715 kb on - strandat 337.771 kb on + strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.777 kb on + strand, within MPMX19_03072at 337.777 kb on + strand, within MPMX19_03072at 337.778 kb on - strand, within MPMX19_03072at 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.879 kb on + strandat 337.879 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.929 kb on - strandat 337.929 kb on - strandat 337.972 kb on + strandat 338.027 kb on + strand, within MPMX19_03073at 338.027 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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335,393 + MPMX19_03070 0.43 -0.1
335,393 + MPMX19_03070 0.43 -0.1
335,393 + MPMX19_03070 0.43 +0.4
335,393 + MPMX19_03070 0.43 +1.6
335,393 + MPMX19_03070 0.43 -1.2
335,393 + MPMX19_03070 0.43 +1.0
335,393 + MPMX19_03070 0.43 -0.4
335,393 + MPMX19_03070 0.43 -0.2
335,394 - MPMX19_03070 0.43 -0.3
335,394 - MPMX19_03070 0.43 -0.7
335,394 - MPMX19_03070 0.43 -0.4
335,394 - MPMX19_03070 0.43 -1.0
335,394 - MPMX19_03070 0.43 -0.6
335,571 - MPMX19_03070 0.57 +0.0
335,600 + MPMX19_03070 0.60 -1.4
335,600 + MPMX19_03070 0.60 -0.1
335,600 + MPMX19_03070 0.60 +0.2
335,600 + MPMX19_03070 0.60 +0.1
335,600 + MPMX19_03070 0.60 +0.0
335,600 + MPMX19_03070 0.60 -1.2
335,601 - MPMX19_03070 0.60 -1.3
335,601 - MPMX19_03070 0.60 +0.4
335,601 - MPMX19_03070 0.60 +0.2
335,601 - MPMX19_03070 0.60 -0.2
335,601 - MPMX19_03070 0.60 +1.9
335,601 - MPMX19_03070 0.60 -0.7
335,738 + MPMX19_03070 0.71 -1.6
335,783 + MPMX19_03070 0.75 -0.4
335,783 + MPMX19_03070 0.75 -1.1
335,783 + MPMX19_03070 0.75 +0.2
335,783 + MPMX19_03070 0.75 +0.3
335,783 + MPMX19_03070 0.75 +0.1
335,783 + MPMX19_03070 0.75 -1.1
335,783 + MPMX19_03070 0.75 +1.3
335,784 - MPMX19_03070 0.75 +1.0
335,784 - MPMX19_03070 0.75 -0.6
335,784 - MPMX19_03070 0.75 +0.2
335,784 - MPMX19_03070 0.75 -0.3
335,784 - MPMX19_03070 0.75 +0.6
335,784 - MPMX19_03070 0.75 +0.3
335,784 - MPMX19_03070 0.75 +0.8
335,784 - MPMX19_03070 0.75 +0.0
335,804 + MPMX19_03070 0.76 -1.0
335,804 + MPMX19_03070 0.76 -1.2
335,805 - MPMX19_03070 0.76 -0.4
335,805 - MPMX19_03070 0.76 -1.1
335,805 - MPMX19_03070 0.76 -0.4
335,805 - MPMX19_03070 0.76 +0.7
335,918 - MPMX19_03070 0.85 +2.2
335,959 + MPMX19_03070 0.89 +0.1
335,959 + MPMX19_03070 0.89 -1.6
336,008 + -0.5
336,008 + -0.3
336,008 + +1.0
336,008 + -0.6
336,008 + -0.2
336,009 + -0.3
336,009 - +0.4
336,009 - -0.1
336,009 - -0.7
336,009 - +0.1
336,088 + +0.5
336,088 + +0.6
336,088 + -0.1
336,088 + -0.4
336,088 + +0.1
336,088 + +2.2
336,088 + -1.7
336,088 + +0.6
336,088 + -1.0
336,088 + +0.1
336,088 + +0.0
336,088 + -0.6
336,088 + -0.9
336,088 + -0.0
336,088 + -0.3
336,088 + -0.9
336,088 + -0.2
336,088 + +0.6
336,088 + -1.5
336,088 + -0.1
336,088 + -1.3
336,089 - -0.1
336,089 - +2.3
336,089 - -0.4
336,089 - -0.8
336,089 - +0.9
336,089 - +0.1
336,089 - +0.1
336,089 - +0.6
336,089 - -0.2
336,089 - +0.6
336,089 - -1.1
336,089 - +1.1
336,089 - +2.8
336,089 - -0.0
336,089 - +0.9
336,089 - +0.5
336,089 - -0.6
336,089 - -0.6
336,089 - +0.0
336,156 + -1.3
336,156 + -1.1
336,157 - -1.4
336,157 - +0.8
336,412 + MPMX19_03071 0.13 +0.7
336,639 + MPMX19_03071 0.29 +0.4
336,760 + MPMX19_03071 0.37 -0.7
336,761 - MPMX19_03071 0.37 -1.1
336,761 - MPMX19_03071 0.37 +0.2
336,761 - MPMX19_03071 0.37 -0.2
336,761 - MPMX19_03071 0.37 -0.7
336,895 + MPMX19_03071 0.46 -0.5
336,896 - MPMX19_03071 0.46 +0.0
336,896 - MPMX19_03071 0.46 -1.0
336,896 - MPMX19_03071 0.46 -0.1
336,896 - MPMX19_03071 0.46 +1.1
336,898 + MPMX19_03071 0.46 +0.9
336,898 + MPMX19_03071 0.46 -1.4
336,898 + MPMX19_03071 0.46 -0.4
336,899 - MPMX19_03071 0.46 -1.0
336,899 - MPMX19_03071 0.46 -0.4
336,899 - MPMX19_03071 0.46 -0.2
336,899 - MPMX19_03071 0.46 +0.1
336,983 + MPMX19_03071 0.52 +0.0
336,983 + MPMX19_03071 0.52 -0.7
337,126 + MPMX19_03071 0.61 -0.7
337,126 + MPMX19_03071 0.61 -0.6
337,126 + MPMX19_03071 0.61 -1.0
337,127 - MPMX19_03071 0.61 +0.9
337,127 - MPMX19_03071 0.61 +0.4
337,127 - MPMX19_03071 0.61 -0.7
337,201 + MPMX19_03071 0.66 -1.9
337,201 + MPMX19_03071 0.66 +0.6
337,201 + MPMX19_03071 0.66 +0.6
337,201 + MPMX19_03071 0.66 -0.9
337,201 + MPMX19_03071 0.66 -0.6
337,201 + MPMX19_03071 0.66 +0.7
337,202 - MPMX19_03071 0.66 -0.1
337,202 - MPMX19_03071 0.66 -0.1
337,202 - MPMX19_03071 0.66 -0.7
337,202 - MPMX19_03071 0.66 -2.2
337,202 - MPMX19_03071 0.66 -0.5
337,202 - MPMX19_03071 0.66 -0.1
337,202 - MPMX19_03071 0.66 -0.6
337,249 + MPMX19_03071 0.70 -0.9
337,249 + MPMX19_03071 0.70 -0.1
337,249 + MPMX19_03071 0.70 -0.6
337,249 + MPMX19_03071 0.70 -0.6
337,250 - MPMX19_03071 0.70 +0.6
337,250 - MPMX19_03071 0.70 +0.9
337,250 - MPMX19_03071 0.70 -1.0
337,274 + MPMX19_03071 0.71 -1.4
337,275 - MPMX19_03071 0.71 +0.6
337,375 + MPMX19_03071 0.78 -0.4
337,375 + MPMX19_03071 0.78 +0.3
337,375 + MPMX19_03071 0.78 -2.0
337,375 + MPMX19_03071 0.78 +0.5
337,376 + MPMX19_03071 0.78 +0.5
337,376 - MPMX19_03071 0.78 -1.7
337,376 - MPMX19_03071 0.78 +1.0
337,376 - MPMX19_03071 0.78 +0.6
337,376 - MPMX19_03071 0.78 -1.0
337,376 - MPMX19_03071 0.78 +0.6
337,376 - MPMX19_03071 0.78 -1.7
337,376 - MPMX19_03071 0.78 +1.0
337,376 - MPMX19_03071 0.78 -0.2
337,376 - MPMX19_03071 0.78 -0.2
337,399 + MPMX19_03071 0.80 +1.0
337,399 + MPMX19_03071 0.80 +0.0
337,399 + MPMX19_03071 0.80 +0.4
337,399 + MPMX19_03071 0.80 -0.0
337,400 - MPMX19_03071 0.80 -0.5
337,400 - MPMX19_03071 0.80 -1.0
337,400 - MPMX19_03071 0.80 -0.7
337,400 - MPMX19_03071 0.80 -0.0
337,400 - MPMX19_03071 0.80 -1.0
337,400 - MPMX19_03071 0.80 +1.6
337,400 - MPMX19_03071 0.80 +0.3
337,400 - MPMX19_03071 0.80 -0.8
337,400 - MPMX19_03071 0.80 +2.0
337,400 - MPMX19_03071 0.80 +0.3
337,525 - MPMX19_03071 0.88 -0.5
337,525 - MPMX19_03071 0.88 +1.2
337,582 + +1.9
337,582 + +0.9
337,583 - -0.4
337,630 + +1.0
337,630 + +0.3
337,630 + -0.4
337,631 - -0.6
337,631 - -2.5
337,700 - +0.0
337,714 + -1.0
337,715 - -1.1
337,715 - -0.5
337,715 - +0.1
337,771 + -0.0
337,772 - -0.3
337,772 - +0.2
337,772 - -1.6
337,777 + MPMX19_03072 0.13 +0.3
337,777 + MPMX19_03072 0.13 +0.1
337,778 - MPMX19_03072 0.14 -0.3
337,868 + +0.5
337,868 + +0.6
337,868 + -0.5
337,868 + -1.3
337,868 + -1.4
337,869 - +0.6
337,869 - -1.2
337,869 - +0.6
337,879 + -2.2
337,879 + -1.6
337,928 + -0.2
337,928 + -1.1
337,928 + +0.4
337,928 + +0.6
337,928 + +1.1
337,929 - -2.5
337,929 - +1.2
337,972 + +0.5
338,027 + MPMX19_03073 0.17 +0.9
338,027 + MPMX19_03073 0.17 +0.8
338,465 + MPMX19_03073 0.82 -1.4
338,465 + MPMX19_03073 0.82 +0.7
338,465 + MPMX19_03073 0.82 +0.4
338,466 - MPMX19_03073 0.82 -1.3
338,466 - MPMX19_03073 0.82 +1.6
338,466 - MPMX19_03073 0.82 -0.1

Or see this region's nucleotide sequence