Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03070

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03068 and MPMX19_03069 are separated by 2 nucleotidesMPMX19_03069 and MPMX19_03070 are separated by 114 nucleotidesMPMX19_03070 and MPMX19_03071 are separated by 114 nucleotides MPMX19_03068: MPMX19_03068 - hypothetical protein, at 333,311 to 334,153 _03068 MPMX19_03069: MPMX19_03069 - hypothetical protein, at 334,156 to 334,749 _03069 MPMX19_03070: MPMX19_03070 - Inner membrane protein YdcO, at 334,864 to 336,096 _03070 MPMX19_03071: MPMX19_03071 - HTH-type transcriptional regulatory protein GabR, at 336,211 to 337,701 _03071 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2 3at 333.929 kb on + strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.930 kb on - strand, within MPMX19_03068at 333.998 kb on + strand, within MPMX19_03068at 333.998 kb on + strand, within MPMX19_03068at 333.999 kb on - strand, within MPMX19_03068at 334.016 kb on + strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.250 kb on - strand, within MPMX19_03069at 334.747 kb on + strandat 334.748 kb on - strandat 334.748 kb on - strandat 334.937 kb on + strandat 334.937 kb on + strandat 334.938 kb on - strandat 334.938 kb on - strandat 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.180 kb on + strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.181 kb on - strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.393 kb on + strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.394 kb on - strand, within MPMX19_03070at 335.571 kb on - strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.600 kb on + strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.601 kb on - strand, within MPMX19_03070at 335.738 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.783 kb on + strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.784 kb on - strand, within MPMX19_03070at 335.804 kb on + strand, within MPMX19_03070at 335.804 kb on + strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.805 kb on - strand, within MPMX19_03070at 335.918 kb on - strand, within MPMX19_03070at 335.959 kb on + strand, within MPMX19_03070at 335.959 kb on + strand, within MPMX19_03070at 336.008 kb on + strandat 336.008 kb on + strandat 336.008 kb on + strandat 336.008 kb on + strandat 336.008 kb on + strandat 336.009 kb on + strandat 336.009 kb on - strandat 336.009 kb on - strandat 336.009 kb on - strandat 336.009 kb on - strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.088 kb on + strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.089 kb on - strandat 336.156 kb on + strandat 336.156 kb on + strandat 336.157 kb on - strandat 336.157 kb on - strandat 336.412 kb on + strand, within MPMX19_03071at 336.639 kb on + strand, within MPMX19_03071at 336.760 kb on + strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.761 kb on - strand, within MPMX19_03071at 336.895 kb on + strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.896 kb on - strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.898 kb on + strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.899 kb on - strand, within MPMX19_03071at 336.983 kb on + strand, within MPMX19_03071at 336.983 kb on + strand, within MPMX19_03071

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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333,929 + MPMX19_03068 0.73 +0.0
333,929 + MPMX19_03068 0.73 -0.2
333,929 + MPMX19_03068 0.73 +1.4
333,930 - MPMX19_03068 0.73 -1.2
333,998 + MPMX19_03068 0.81 +0.2
333,998 + MPMX19_03068 0.81 +0.6
333,999 - MPMX19_03068 0.82 +0.3
334,016 + MPMX19_03068 0.84 +0.2
334,017 - MPMX19_03068 0.84 +0.0
334,017 - MPMX19_03068 0.84 +1.0
334,017 - MPMX19_03068 0.84 -1.6
334,249 + MPMX19_03069 0.16 -0.7
334,249 + MPMX19_03069 0.16 -0.9
334,249 + MPMX19_03069 0.16 -0.6
334,249 + MPMX19_03069 0.16 -0.9
334,250 - MPMX19_03069 0.16 -0.7
334,747 + -0.2
334,748 - +0.1
334,748 - -0.4
334,937 + +0.3
334,937 + +0.8
334,938 - +0.6
334,938 - -0.8
335,180 + MPMX19_03070 0.26 +1.6
335,180 + MPMX19_03070 0.26 -0.7
335,180 + MPMX19_03070 0.26 +0.0
335,180 + MPMX19_03070 0.26 +2.1
335,180 + MPMX19_03070 0.26 +1.3
335,180 + MPMX19_03070 0.26 +0.9
335,180 + MPMX19_03070 0.26 -1.0
335,180 + MPMX19_03070 0.26 +1.4
335,180 + MPMX19_03070 0.26 -0.2
335,180 + MPMX19_03070 0.26 +0.4
335,180 + MPMX19_03070 0.26 +0.4
335,180 + MPMX19_03070 0.26 -2.0
335,180 + MPMX19_03070 0.26 +0.6
335,181 - MPMX19_03070 0.26 +0.1
335,181 - MPMX19_03070 0.26 +0.0
335,181 - MPMX19_03070 0.26 -0.4
335,181 - MPMX19_03070 0.26 +0.2
335,181 - MPMX19_03070 0.26 -0.3
335,181 - MPMX19_03070 0.26 -1.4
335,181 - MPMX19_03070 0.26 +0.1
335,181 - MPMX19_03070 0.26 +0.4
335,181 - MPMX19_03070 0.26 -0.6
335,181 - MPMX19_03070 0.26 +0.5
335,181 - MPMX19_03070 0.26 -0.5
335,393 + MPMX19_03070 0.43 -0.1
335,393 + MPMX19_03070 0.43 -0.1
335,393 + MPMX19_03070 0.43 +0.4
335,393 + MPMX19_03070 0.43 +1.6
335,393 + MPMX19_03070 0.43 -1.2
335,393 + MPMX19_03070 0.43 +1.0
335,393 + MPMX19_03070 0.43 -0.4
335,393 + MPMX19_03070 0.43 -0.2
335,394 - MPMX19_03070 0.43 -0.3
335,394 - MPMX19_03070 0.43 -0.7
335,394 - MPMX19_03070 0.43 -0.4
335,394 - MPMX19_03070 0.43 -1.0
335,394 - MPMX19_03070 0.43 -0.6
335,571 - MPMX19_03070 0.57 +0.0
335,600 + MPMX19_03070 0.60 -1.4
335,600 + MPMX19_03070 0.60 -0.1
335,600 + MPMX19_03070 0.60 +0.2
335,600 + MPMX19_03070 0.60 +0.1
335,600 + MPMX19_03070 0.60 +0.0
335,600 + MPMX19_03070 0.60 -1.2
335,601 - MPMX19_03070 0.60 -1.3
335,601 - MPMX19_03070 0.60 +0.4
335,601 - MPMX19_03070 0.60 +0.2
335,601 - MPMX19_03070 0.60 -0.2
335,601 - MPMX19_03070 0.60 +1.9
335,601 - MPMX19_03070 0.60 -0.7
335,738 + MPMX19_03070 0.71 -1.6
335,783 + MPMX19_03070 0.75 -0.4
335,783 + MPMX19_03070 0.75 -1.1
335,783 + MPMX19_03070 0.75 +0.2
335,783 + MPMX19_03070 0.75 +0.3
335,783 + MPMX19_03070 0.75 +0.1
335,783 + MPMX19_03070 0.75 -1.1
335,783 + MPMX19_03070 0.75 +1.3
335,784 - MPMX19_03070 0.75 +1.0
335,784 - MPMX19_03070 0.75 -0.6
335,784 - MPMX19_03070 0.75 +0.2
335,784 - MPMX19_03070 0.75 -0.3
335,784 - MPMX19_03070 0.75 +0.6
335,784 - MPMX19_03070 0.75 +0.3
335,784 - MPMX19_03070 0.75 +0.8
335,784 - MPMX19_03070 0.75 +0.0
335,804 + MPMX19_03070 0.76 -1.0
335,804 + MPMX19_03070 0.76 -1.2
335,805 - MPMX19_03070 0.76 -0.4
335,805 - MPMX19_03070 0.76 -1.1
335,805 - MPMX19_03070 0.76 -0.4
335,805 - MPMX19_03070 0.76 +0.7
335,918 - MPMX19_03070 0.85 +2.2
335,959 + MPMX19_03070 0.89 +0.1
335,959 + MPMX19_03070 0.89 -1.6
336,008 + -0.5
336,008 + -0.3
336,008 + +1.0
336,008 + -0.6
336,008 + -0.2
336,009 + -0.3
336,009 - +0.4
336,009 - -0.1
336,009 - -0.7
336,009 - +0.1
336,088 + +0.5
336,088 + +0.6
336,088 + -0.1
336,088 + -0.4
336,088 + +0.1
336,088 + +2.2
336,088 + -1.7
336,088 + +0.6
336,088 + -1.0
336,088 + +0.1
336,088 + +0.0
336,088 + -0.6
336,088 + -0.9
336,088 + -0.0
336,088 + -0.3
336,088 + -0.9
336,088 + -0.2
336,088 + +0.6
336,088 + -1.5
336,088 + -0.1
336,088 + -1.3
336,089 - -0.1
336,089 - +2.3
336,089 - -0.4
336,089 - -0.8
336,089 - +0.9
336,089 - +0.1
336,089 - +0.1
336,089 - +0.6
336,089 - -0.2
336,089 - +0.6
336,089 - -1.1
336,089 - +1.1
336,089 - +2.8
336,089 - -0.0
336,089 - +0.9
336,089 - +0.5
336,089 - -0.6
336,089 - -0.6
336,089 - +0.0
336,156 + -1.3
336,156 + -1.1
336,157 - -1.4
336,157 - +0.8
336,412 + MPMX19_03071 0.13 +0.7
336,639 + MPMX19_03071 0.29 +0.4
336,760 + MPMX19_03071 0.37 -0.7
336,761 - MPMX19_03071 0.37 -1.1
336,761 - MPMX19_03071 0.37 +0.2
336,761 - MPMX19_03071 0.37 -0.2
336,761 - MPMX19_03071 0.37 -0.7
336,895 + MPMX19_03071 0.46 -0.5
336,896 - MPMX19_03071 0.46 +0.0
336,896 - MPMX19_03071 0.46 -1.0
336,896 - MPMX19_03071 0.46 -0.1
336,896 - MPMX19_03071 0.46 +1.1
336,898 + MPMX19_03071 0.46 +0.9
336,898 + MPMX19_03071 0.46 -1.4
336,898 + MPMX19_03071 0.46 -0.4
336,899 - MPMX19_03071 0.46 -1.0
336,899 - MPMX19_03071 0.46 -0.4
336,899 - MPMX19_03071 0.46 -0.2
336,899 - MPMX19_03071 0.46 +0.1
336,983 + MPMX19_03071 0.52 +0.0
336,983 + MPMX19_03071 0.52 -0.7

Or see this region's nucleotide sequence