Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03060

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03058 and MPMX19_03059 are separated by 238 nucleotidesMPMX19_03059 and MPMX19_03060 are separated by 13 nucleotidesMPMX19_03060 and MPMX19_03061 overlap by 14 nucleotidesMPMX19_03061 and MPMX19_03062 are separated by 59 nucleotides MPMX19_03058: MPMX19_03058 - hypothetical protein, at 322,374 to 324,695 _03058 MPMX19_03059: MPMX19_03059 - hypothetical protein, at 324,934 to 325,161 _03059 MPMX19_03060: MPMX19_03060 - Ferredoxin-type protein NapF, at 325,175 to 325,720 _03060 MPMX19_03061: MPMX19_03061 - Chaperone NapD, at 325,707 to 326,009 _03061 MPMX19_03062: MPMX19_03062 - Periplasmic nitrate reductase, at 326,069 to 328,561 _03062 Position (kb) 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1at 324.250 kb on + strand, within MPMX19_03058at 324.250 kb on + strand, within MPMX19_03058at 324.250 kb on + strand, within MPMX19_03058at 324.250 kb on + strand, within MPMX19_03058at 324.250 kb on + strand, within MPMX19_03058at 324.251 kb on - strand, within MPMX19_03058at 324.251 kb on - strand, within MPMX19_03058at 324.251 kb on - strand, within MPMX19_03058at 324.251 kb on - strand, within MPMX19_03058at 324.251 kb on - strand, within MPMX19_03058at 324.251 kb on - strand, within MPMX19_03058at 324.251 kb on - strand, within MPMX19_03058at 324.421 kb on + strand, within MPMX19_03058at 324.422 kb on - strand, within MPMX19_03058at 324.422 kb on - strand, within MPMX19_03058at 324.422 kb on - strand, within MPMX19_03058at 324.451 kb on + strand, within MPMX19_03058at 324.451 kb on + strand, within MPMX19_03058at 324.451 kb on + strand, within MPMX19_03058at 324.452 kb on - strand, within MPMX19_03058at 324.452 kb on - strand, within MPMX19_03058at 324.538 kb on + strandat 324.538 kb on + strandat 324.538 kb on + strandat 324.538 kb on + strandat 324.539 kb on - strandat 324.539 kb on - strandat 324.539 kb on - strandat 324.645 kb on + strandat 324.645 kb on + strandat 324.645 kb on + strandat 324.646 kb on - strandat 324.646 kb on - strandat 324.646 kb on - strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 325.100 kb on - strand, within MPMX19_03059at 325.191 kb on + strandat 325.191 kb on + strandat 325.191 kb on + strandat 325.192 kb on - strandat 325.192 kb on - strandat 325.206 kb on + strandat 325.207 kb on - strandat 325.290 kb on - strand, within MPMX19_03060at 325.723 kb on + strandat 325.723 kb on + strandat 325.723 kb on + strandat 325.724 kb on - strandat 326.324 kb on + strand, within MPMX19_03062at 326.324 kb on + strand, within MPMX19_03062at 326.324 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.346 kb on - strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.540 kb on + strand, within MPMX19_03062at 326.540 kb on + strand, within MPMX19_03062at 326.541 kb on - strand, within MPMX19_03062at 326.541 kb on - strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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324,250 + MPMX19_03058 0.81 +0.9
324,250 + MPMX19_03058 0.81 -1.6
324,250 + MPMX19_03058 0.81 -0.5
324,250 + MPMX19_03058 0.81 -1.1
324,250 + MPMX19_03058 0.81 -0.2
324,251 - MPMX19_03058 0.81 -0.7
324,251 - MPMX19_03058 0.81 +0.1
324,251 - MPMX19_03058 0.81 +1.4
324,251 - MPMX19_03058 0.81 -1.4
324,251 - MPMX19_03058 0.81 +0.9
324,251 - MPMX19_03058 0.81 -0.7
324,251 - MPMX19_03058 0.81 -1.3
324,421 + MPMX19_03058 0.88 +0.9
324,422 - MPMX19_03058 0.88 -1.0
324,422 - MPMX19_03058 0.88 -1.2
324,422 - MPMX19_03058 0.88 -0.1
324,451 + MPMX19_03058 0.89 -1.2
324,451 + MPMX19_03058 0.89 +0.0
324,451 + MPMX19_03058 0.89 +0.0
324,452 - MPMX19_03058 0.89 -0.5
324,452 - MPMX19_03058 0.89 -0.9
324,538 + -0.4
324,538 + -0.1
324,538 + +0.2
324,538 + -0.6
324,539 - -0.0
324,539 - +0.0
324,539 - -0.5
324,645 + -0.4
324,645 + -2.8
324,645 + -0.4
324,646 - -0.4
324,646 - +0.4
324,646 - -0.8
324,843 + -0.5
324,843 + +0.3
324,843 + -0.4
324,843 + -0.4
324,843 + -0.0
324,843 + -0.1
324,843 + -0.1
324,843 + -1.2
324,843 + -0.3
324,843 + -0.2
324,843 + -0.1
324,844 - +0.2
324,844 - -0.3
324,844 - -1.0
324,844 - +0.4
324,844 - -0.3
324,844 - +1.6
324,844 - +0.5
324,844 - +0.8
324,844 - -0.5
325,100 - MPMX19_03059 0.73 -0.5
325,191 + -0.2
325,191 + +0.4
325,191 + +1.4
325,192 - -0.2
325,192 - +1.2
325,206 + -2.2
325,207 - -0.2
325,290 - MPMX19_03060 0.21 +0.2
325,723 + -0.4
325,723 + -0.9
325,723 + +0.2
325,724 - -0.3
326,324 + MPMX19_03062 0.10 -0.5
326,324 + MPMX19_03062 0.10 +0.3
326,324 + MPMX19_03062 0.10 -0.2
326,345 + MPMX19_03062 0.11 -1.4
326,345 + MPMX19_03062 0.11 +1.2
326,345 + MPMX19_03062 0.11 -1.7
326,345 + MPMX19_03062 0.11 +0.1
326,346 - MPMX19_03062 0.11 -0.5
326,396 + MPMX19_03062 0.13 -1.6
326,396 + MPMX19_03062 0.13 -1.0
326,396 + MPMX19_03062 0.13 -0.8
326,396 + MPMX19_03062 0.13 -0.2
326,397 - MPMX19_03062 0.13 +0.7
326,397 - MPMX19_03062 0.13 -1.6
326,397 - MPMX19_03062 0.13 -1.0
326,397 - MPMX19_03062 0.13 -0.6
326,540 + MPMX19_03062 0.19 +0.1
326,540 + MPMX19_03062 0.19 -1.1
326,541 - MPMX19_03062 0.19 +0.0
326,541 - MPMX19_03062 0.19 +1.2
326,669 + MPMX19_03062 0.24 -0.9
326,669 + MPMX19_03062 0.24 +0.0
326,669 + MPMX19_03062 0.24 +0.6

Or see this region's nucleotide sequence