Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03038

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03036 and MPMX19_03037 are separated by 22 nucleotidesMPMX19_03037 and MPMX19_03038 overlap by 36 nucleotidesMPMX19_03038 and MPMX19_03039 are separated by 123 nucleotidesMPMX19_03039 and MPMX19_03040 are separated by 116 nucleotides MPMX19_03036: MPMX19_03036 - Glutathionyl-hydroquinone reductase YqjG, at 303,743 to 304,744 _03036 MPMX19_03037: MPMX19_03037 - Carboxylesterase 2, at 304,767 to 305,435 _03037 MPMX19_03038: MPMX19_03038 - hypothetical protein, at 305,400 to 306,530 _03038 MPMX19_03039: MPMX19_03039 - Cyclic AMP receptor protein, at 306,654 to 307,373 _03039 MPMX19_03040: MPMX19_03040 - hypothetical protein, at 307,490 to 307,780 _03040 Position (kb) 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.424 kb on + strand, within MPMX19_03036at 304.496 kb on + strand, within MPMX19_03036at 304.496 kb on + strand, within MPMX19_03036at 304.497 kb on - strand, within MPMX19_03036at 304.539 kb on - strand, within MPMX19_03036at 304.557 kb on - strand, within MPMX19_03036at 304.557 kb on - strand, within MPMX19_03036at 304.557 kb on - strand, within MPMX19_03036at 304.571 kb on + strand, within MPMX19_03036at 304.571 kb on + strand, within MPMX19_03036at 304.571 kb on + strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.626 kb on - strand, within MPMX19_03036at 304.626 kb on - strand, within MPMX19_03036at 304.626 kb on - strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 305.401 kb on + strandat 305.401 kb on + strandat 305.401 kb on + strandat 305.401 kb on + strandat 305.401 kb on + strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.761 kb on + strand, within MPMX19_03038at 305.761 kb on + strand, within MPMX19_03038at 305.761 kb on + strand, within MPMX19_03038at 305.761 kb on + strand, within MPMX19_03038at 305.762 kb on - strand, within MPMX19_03038at 305.762 kb on - strand, within MPMX19_03038at 305.762 kb on - strand, within MPMX19_03038at 306.364 kb on + strand, within MPMX19_03038at 306.365 kb on - strand, within MPMX19_03038at 306.365 kb on - strand, within MPMX19_03038at 306.365 kb on - strand, within MPMX19_03038at 306.365 kb on - strand, within MPMX19_03038at 306.365 kb on - strand, within MPMX19_03038at 306.463 kb on + strandat 306.463 kb on + strandat 306.463 kb on + strandat 306.464 kb on - strandat 306.464 kb on - strandat 306.464 kb on - strandat 306.464 kb on - strandat 306.464 kb on - strandat 306.481 kb on + strandat 306.481 kb on + strandat 306.482 kb on - strandat 306.680 kb on - strandat 306.933 kb on + strand, within MPMX19_03039at 306.933 kb on + strand, within MPMX19_03039at 306.933 kb on + strand, within MPMX19_03039at 306.933 kb on + strand, within MPMX19_03039at 306.934 kb on - strand, within MPMX19_03039at 306.934 kb on - strand, within MPMX19_03039at 307.362 kb on - strandat 307.371 kb on + strandat 307.372 kb on - strandat 307.372 kb on - strandat 307.385 kb on + strandat 307.385 kb on + strandat 307.385 kb on + strandat 307.386 kb on - strandat 307.386 kb on - strandat 307.450 kb on + strandat 307.524 kb on + strand, within MPMX19_03040at 307.525 kb on - strand, within MPMX19_03040

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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304,424 + MPMX19_03036 0.68 -1.5
304,496 + MPMX19_03036 0.75 -0.5
304,496 + MPMX19_03036 0.75 +0.5
304,497 - MPMX19_03036 0.75 +0.0
304,539 - MPMX19_03036 0.79 -0.1
304,557 - MPMX19_03036 0.81 +0.1
304,557 - MPMX19_03036 0.81 +0.5
304,557 - MPMX19_03036 0.81 -0.5
304,571 + MPMX19_03036 0.83 -0.8
304,571 + MPMX19_03036 0.83 +0.2
304,571 + MPMX19_03036 0.83 -0.1
304,572 - MPMX19_03036 0.83 -2.0
304,572 - MPMX19_03036 0.83 -1.0
304,572 - MPMX19_03036 0.83 -1.4
304,572 - MPMX19_03036 0.83 -2.3
304,572 - MPMX19_03036 0.83 +0.0
304,572 - MPMX19_03036 0.83 -0.2
304,626 - MPMX19_03036 0.88 -2.9
304,626 - MPMX19_03036 0.88 +0.6
304,626 - MPMX19_03036 0.88 -0.2
304,628 + MPMX19_03036 0.88 +0.0
304,628 + MPMX19_03036 0.88 -0.2
304,628 + MPMX19_03036 0.88 -0.4
304,628 + MPMX19_03036 0.88 +0.3
304,628 + MPMX19_03036 0.88 -1.6
304,628 + MPMX19_03036 0.88 -1.5
304,628 + MPMX19_03036 0.88 +1.0
304,628 + MPMX19_03036 0.88 -0.2
304,629 - MPMX19_03036 0.88 -0.1
304,629 - MPMX19_03036 0.88 +0.0
304,629 - MPMX19_03036 0.88 -1.3
304,629 - MPMX19_03036 0.88 +0.1
304,629 - MPMX19_03036 0.88 +0.0
304,629 - MPMX19_03036 0.88 -0.3
304,629 - MPMX19_03036 0.88 -1.5
305,401 + +0.1
305,401 + -0.9
305,401 + -0.5
305,401 + -0.5
305,401 + +0.2
305,402 - -1.0
305,402 - +0.6
305,402 - -0.4
305,402 - +2.3
305,402 - -0.3
305,402 - -0.3
305,761 + MPMX19_03038 0.32 -0.1
305,761 + MPMX19_03038 0.32 -0.3
305,761 + MPMX19_03038 0.32 -0.9
305,761 + MPMX19_03038 0.32 +1.2
305,762 - MPMX19_03038 0.32 +0.1
305,762 - MPMX19_03038 0.32 -0.2
305,762 - MPMX19_03038 0.32 +0.9
306,364 + MPMX19_03038 0.85 +1.2
306,365 - MPMX19_03038 0.85 +1.0
306,365 - MPMX19_03038 0.85 +1.2
306,365 - MPMX19_03038 0.85 -0.9
306,365 - MPMX19_03038 0.85 -0.8
306,365 - MPMX19_03038 0.85 +0.0
306,463 + -1.2
306,463 + -1.6
306,463 + -0.4
306,464 - -0.9
306,464 - -0.1
306,464 - +0.4
306,464 - -0.1
306,464 - -1.1
306,481 + -0.5
306,481 + +0.5
306,482 - -1.1
306,680 - -1.6
306,933 + MPMX19_03039 0.39 -1.4
306,933 + MPMX19_03039 0.39 +0.5
306,933 + MPMX19_03039 0.39 -0.2
306,933 + MPMX19_03039 0.39 +0.7
306,934 - MPMX19_03039 0.39 -1.6
306,934 - MPMX19_03039 0.39 -0.6
307,362 - +0.0
307,371 + -0.1
307,372 - -0.8
307,372 - +0.4
307,385 + -0.8
307,385 + -0.6
307,385 + -1.0
307,386 - +0.4
307,386 - -1.2
307,450 + -0.1
307,524 + MPMX19_03040 0.12 +0.0
307,525 - MPMX19_03040 0.12 +0.3

Or see this region's nucleotide sequence