Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02984

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02983 and MPMX19_02984 are separated by 98 nucleotidesMPMX19_02984 and MPMX19_02985 overlap by 4 nucleotidesMPMX19_02985 and MPMX19_02986 overlap by 4 nucleotides MPMX19_02983: MPMX19_02983 - hypothetical protein, at 245,506 to 246,555 _02983 MPMX19_02984: MPMX19_02984 - Spermidine/putrescine import ATP-binding protein PotA, at 246,654 to 247,730 _02984 MPMX19_02985: MPMX19_02985 - hypothetical protein, at 247,727 to 248,656 _02985 MPMX19_02986: MPMX19_02986 - Inner membrane ABC transporter permease protein YdcV, at 248,653 to 249,453 _02986 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.836 kb on + strand, within MPMX19_02983at 245.836 kb on + strand, within MPMX19_02983at 245.837 kb on - strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.914 kb on + strand, within MPMX19_02983at 245.914 kb on + strand, within MPMX19_02983at 245.915 kb on - strand, within MPMX19_02983at 245.915 kb on - strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.256 kb on + strand, within MPMX19_02983at 246.451 kb on + strandat 246.558 kb on + strandat 246.558 kb on + strandat 246.559 kb on - strandat 246.559 kb on - strandat 246.567 kb on - strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 247.053 kb on + strand, within MPMX19_02984at 247.053 kb on + strand, within MPMX19_02984at 247.295 kb on - strand, within MPMX19_02984at 247.341 kb on + strand, within MPMX19_02984at 247.341 kb on + strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.823 kb on + strand, within MPMX19_02985at 247.823 kb on + strand, within MPMX19_02985at 247.824 kb on - strand, within MPMX19_02985at 247.873 kb on - strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.244 kb on - strand, within MPMX19_02985at 248.244 kb on - strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.523 kb on - strand, within MPMX19_02985at 248.523 kb on - strand, within MPMX19_02985at 248.637 kb on - strandat 248.699 kb on + strandat 248.700 kb on - strandat 248.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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245,689 + MPMX19_02983 0.17 -2.1
245,689 + MPMX19_02983 0.17 +0.6
245,689 + MPMX19_02983 0.17 +0.6
245,689 + MPMX19_02983 0.17 +2.3
245,690 - MPMX19_02983 0.18 -0.8
245,690 - MPMX19_02983 0.18 -0.2
245,690 - MPMX19_02983 0.18 +1.7
245,785 + MPMX19_02983 0.27 +0.7
245,785 + MPMX19_02983 0.27 -0.3
245,785 + MPMX19_02983 0.27 +1.6
245,785 + MPMX19_02983 0.27 -0.3
245,785 + MPMX19_02983 0.27 -0.7
245,785 + MPMX19_02983 0.27 +1.1
245,785 + MPMX19_02983 0.27 -1.3
245,785 + MPMX19_02983 0.27 +1.0
245,785 + MPMX19_02983 0.27 +0.7
245,786 - MPMX19_02983 0.27 -0.5
245,786 - MPMX19_02983 0.27 +0.3
245,786 - MPMX19_02983 0.27 +0.9
245,836 + MPMX19_02983 0.31 -2.7
245,836 + MPMX19_02983 0.31 -1.2
245,837 - MPMX19_02983 0.32 -0.5
245,848 + MPMX19_02983 0.33 -1.2
245,848 + MPMX19_02983 0.33 -0.3
245,848 + MPMX19_02983 0.33 +1.2
245,848 + MPMX19_02983 0.33 +0.2
245,848 + MPMX19_02983 0.33 +1.6
245,849 - MPMX19_02983 0.33 -0.4
245,849 - MPMX19_02983 0.33 +0.6
245,849 - MPMX19_02983 0.33 +0.2
245,849 - MPMX19_02983 0.33 +0.4
245,914 + MPMX19_02983 0.39 -2.0
245,914 + MPMX19_02983 0.39 +0.2
245,915 - MPMX19_02983 0.39 +0.2
245,915 - MPMX19_02983 0.39 -1.6
245,926 + MPMX19_02983 0.40 +1.3
245,926 + MPMX19_02983 0.40 +0.3
245,926 + MPMX19_02983 0.40 -1.4
245,926 + MPMX19_02983 0.40 -0.9
245,927 - MPMX19_02983 0.40 +0.9
245,927 - MPMX19_02983 0.40 +0.2
245,927 - MPMX19_02983 0.40 +2.2
246,025 + MPMX19_02983 0.49 +0.4
246,025 + MPMX19_02983 0.49 -0.7
246,025 + MPMX19_02983 0.49 -0.7
246,026 - MPMX19_02983 0.50 +0.2
246,026 - MPMX19_02983 0.50 -0.1
246,026 - MPMX19_02983 0.50 -0.9
246,026 - MPMX19_02983 0.50 +1.1
246,026 - MPMX19_02983 0.50 -1.0
246,026 - MPMX19_02983 0.50 -1.2
246,026 - MPMX19_02983 0.50 +0.0
246,026 - MPMX19_02983 0.50 +1.9
246,026 - MPMX19_02983 0.50 +0.4
246,026 - MPMX19_02983 0.50 -0.6
246,026 - MPMX19_02983 0.50 -0.3
246,136 + MPMX19_02983 0.60 -2.2
246,136 + MPMX19_02983 0.60 -1.2
246,136 + MPMX19_02983 0.60 +0.4
246,137 - MPMX19_02983 0.60 -0.4
246,137 - MPMX19_02983 0.60 +0.3
246,137 - MPMX19_02983 0.60 -0.8
246,137 - MPMX19_02983 0.60 +1.6
246,137 - MPMX19_02983 0.60 +0.2
246,256 + MPMX19_02983 0.71 -1.7
246,451 + -0.7
246,558 + -0.9
246,558 + +0.0
246,559 - -0.9
246,559 - -1.4
246,567 - -1.0
246,684 + -0.6
246,684 + -0.3
246,684 + -2.9
246,684 + -0.1
246,684 + +0.9
246,684 + -0.1
246,684 + +1.2
246,685 - -0.1
246,685 - -1.3
246,685 - -0.5
246,685 - -0.1
246,685 - -1.9
246,685 - -1.0
246,927 + MPMX19_02984 0.25 -0.1
246,927 + MPMX19_02984 0.25 +0.1
246,927 + MPMX19_02984 0.25 -0.2
246,927 + MPMX19_02984 0.25 +1.4
246,927 + MPMX19_02984 0.25 +1.1
246,927 + MPMX19_02984 0.25 -0.7
246,927 + MPMX19_02984 0.25 -1.0
246,927 + MPMX19_02984 0.25 -1.1
246,927 + MPMX19_02984 0.25 +0.4
246,927 + MPMX19_02984 0.25 +0.6
246,927 + MPMX19_02984 0.25 -1.6
246,927 + MPMX19_02984 0.25 -2.0
246,927 + MPMX19_02984 0.25 +0.9
246,927 + MPMX19_02984 0.25 +0.6
246,927 + MPMX19_02984 0.25 -0.3
246,927 + MPMX19_02984 0.25 -0.4
246,927 + MPMX19_02984 0.25 -1.3
246,928 - MPMX19_02984 0.25 -0.6
246,928 - MPMX19_02984 0.25 -0.8
246,928 - MPMX19_02984 0.25 -0.5
246,928 - MPMX19_02984 0.25 +1.6
246,928 - MPMX19_02984 0.25 -0.6
246,928 - MPMX19_02984 0.25 -0.6
246,928 - MPMX19_02984 0.25 -0.4
246,928 - MPMX19_02984 0.25 +0.4
246,928 - MPMX19_02984 0.25 +0.8
246,928 - MPMX19_02984 0.25 -0.2
246,928 - MPMX19_02984 0.25 -0.5
246,928 - MPMX19_02984 0.25 -0.6
246,928 - MPMX19_02984 0.25 +0.0
246,928 - MPMX19_02984 0.25 +0.2
246,928 - MPMX19_02984 0.25 +0.2
246,928 - MPMX19_02984 0.25 -2.1
246,928 - MPMX19_02984 0.25 -0.6
246,928 - MPMX19_02984 0.25 +0.2
246,928 - MPMX19_02984 0.25 -0.5
246,928 - MPMX19_02984 0.25 +0.6
247,053 + MPMX19_02984 0.37 -0.8
247,053 + MPMX19_02984 0.37 -1.1
247,295 - MPMX19_02984 0.60 +1.2
247,341 + MPMX19_02984 0.64 -0.3
247,341 + MPMX19_02984 0.64 +0.8
247,342 - MPMX19_02984 0.64 +0.5
247,342 - MPMX19_02984 0.64 +0.5
247,342 - MPMX19_02984 0.64 +2.3
247,342 - MPMX19_02984 0.64 -1.2
247,342 - MPMX19_02984 0.64 -0.6
247,342 - MPMX19_02984 0.64 +0.3
247,342 - MPMX19_02984 0.64 +0.2
247,823 + MPMX19_02985 0.10 +0.6
247,823 + MPMX19_02985 0.10 -1.9
247,824 - MPMX19_02985 0.10 +0.4
247,873 - MPMX19_02985 0.16 -0.0
247,919 + MPMX19_02985 0.21 +0.1
247,919 + MPMX19_02985 0.21 -0.4
247,919 + MPMX19_02985 0.21 +1.2
247,919 + MPMX19_02985 0.21 -2.2
247,920 - MPMX19_02985 0.21 -0.5
247,920 - MPMX19_02985 0.21 -0.3
247,920 - MPMX19_02985 0.21 -0.3
247,955 + MPMX19_02985 0.25 -2.2
247,955 + MPMX19_02985 0.25 -1.1
247,955 + MPMX19_02985 0.25 +0.3
247,955 + MPMX19_02985 0.25 +0.5
247,955 + MPMX19_02985 0.25 +0.9
247,955 + MPMX19_02985 0.25 -0.9
247,955 + MPMX19_02985 0.25 -0.6
247,955 + MPMX19_02985 0.25 +1.0
247,956 - MPMX19_02985 0.25 -1.8
247,956 - MPMX19_02985 0.25 -1.1
247,956 - MPMX19_02985 0.25 +0.0
247,956 - MPMX19_02985 0.25 -2.2
247,956 - MPMX19_02985 0.25 -1.6
247,956 - MPMX19_02985 0.25 +1.1
247,956 - MPMX19_02985 0.25 -0.3
247,956 - MPMX19_02985 0.25 -1.4
247,956 - MPMX19_02985 0.25 +1.3
247,956 - MPMX19_02985 0.25 -0.8
247,956 - MPMX19_02985 0.25 -1.0
247,979 + MPMX19_02985 0.27 -0.2
247,979 + MPMX19_02985 0.27 +0.4
247,979 + MPMX19_02985 0.27 +0.7
247,979 + MPMX19_02985 0.27 -0.9
247,979 + MPMX19_02985 0.27 -0.1
247,979 + MPMX19_02985 0.27 +0.6
247,980 - MPMX19_02985 0.27 -2.2
247,980 - MPMX19_02985 0.27 -1.5
247,980 - MPMX19_02985 0.27 -0.7
247,980 - MPMX19_02985 0.27 -1.9
247,980 - MPMX19_02985 0.27 -1.2
247,980 - MPMX19_02985 0.27 +0.4
247,980 - MPMX19_02985 0.27 -0.9
247,980 - MPMX19_02985 0.27 -0.7
248,063 + MPMX19_02985 0.36 -0.8
248,063 + MPMX19_02985 0.36 -0.4
248,063 + MPMX19_02985 0.36 -1.9
248,063 + MPMX19_02985 0.36 -0.9
248,063 + MPMX19_02985 0.36 +0.4
248,063 + MPMX19_02985 0.36 -1.2
248,063 + MPMX19_02985 0.36 +1.8
248,063 + MPMX19_02985 0.36 -1.6
248,063 + MPMX19_02985 0.36 -1.9
248,063 + MPMX19_02985 0.36 -0.1
248,064 - MPMX19_02985 0.36 +0.3
248,064 - MPMX19_02985 0.36 -2.4
248,064 - MPMX19_02985 0.36 +0.8
248,064 - MPMX19_02985 0.36 +1.1
248,064 - MPMX19_02985 0.36 -0.2
248,064 - MPMX19_02985 0.36 -1.0
248,064 - MPMX19_02985 0.36 -1.5
248,243 + MPMX19_02985 0.55 -0.6
248,243 + MPMX19_02985 0.55 +0.6
248,243 + MPMX19_02985 0.55 -0.6
248,243 + MPMX19_02985 0.55 -0.9
248,243 + MPMX19_02985 0.55 -0.5
248,243 + MPMX19_02985 0.55 +0.3
248,243 + MPMX19_02985 0.55 -1.2
248,243 + MPMX19_02985 0.55 -0.3
248,243 + MPMX19_02985 0.55 -2.0
248,243 + MPMX19_02985 0.55 +0.3
248,243 + MPMX19_02985 0.55 -0.6
248,244 - MPMX19_02985 0.56 -1.6
248,244 - MPMX19_02985 0.56 -1.1
248,522 + MPMX19_02985 0.85 +0.5
248,522 + MPMX19_02985 0.85 +0.4
248,522 + MPMX19_02985 0.85 -0.1
248,522 + MPMX19_02985 0.85 -2.6
248,523 - MPMX19_02985 0.86 -0.4
248,523 - MPMX19_02985 0.86 -0.5
248,637 - +0.3
248,699 + +0.3
248,700 - -1.1
248,700 - -1.3

Or see this region's nucleotide sequence