Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02930

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02928 and MPMX19_02929 overlap by 4 nucleotidesMPMX19_02929 and MPMX19_02930 overlap by 4 nucleotidesMPMX19_02930 and MPMX19_02931 are separated by 156 nucleotidesMPMX19_02931 and MPMX19_02932 overlap by 4 nucleotides MPMX19_02928: MPMX19_02928 - hypothetical protein, at 182,903 to 183,739 _02928 MPMX19_02929: MPMX19_02929 - hypothetical protein, at 183,736 to 184,644 _02929 MPMX19_02930: MPMX19_02930 - hypothetical protein, at 184,641 to 185,756 _02930 MPMX19_02931: MPMX19_02931 - Linearmycin resistance ATP-binding protein LnrL, at 185,913 to 186,701 _02931 MPMX19_02932: MPMX19_02932 - hypothetical protein, at 186,698 to 187,513 _02932 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 183.675 kb on + strandat 183.675 kb on + strandat 183.714 kb on + strandat 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.915 kb on - strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.128 kb on - strand, within MPMX19_02929at 184.128 kb on - strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.368 kb on - strand, within MPMX19_02929at 184.672 kb on + strandat 184.846 kb on + strand, within MPMX19_02930at 184.846 kb on + strand, within MPMX19_02930at 184.846 kb on + strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 185.019 kb on + strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.140 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.362 kb on - strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.636 kb on + strand, within MPMX19_02930at 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 186.123 kb on + strand, within MPMX19_02931at 186.123 kb on + strand, within MPMX19_02931at 186.124 kb on - strand, within MPMX19_02931at 186.124 kb on - strand, within MPMX19_02931at 186.261 kb on + strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.394 kb on + strand, within MPMX19_02931at 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.719 kb on + strandat 186.719 kb on + strandat 186.720 kb on - strandat 186.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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183,675 + +0.4
183,675 + -0.9
183,714 + -1.0
183,914 + MPMX19_02929 0.20 +0.0
183,914 + MPMX19_02929 0.20 -0.4
183,914 + MPMX19_02929 0.20 -1.3
183,914 + MPMX19_02929 0.20 -1.5
183,914 + MPMX19_02929 0.20 -0.4
183,915 - MPMX19_02929 0.20 -1.0
184,124 + MPMX19_02929 0.43 -0.4
184,124 + MPMX19_02929 0.43 +0.0
184,124 + MPMX19_02929 0.43 +1.0
184,124 + MPMX19_02929 0.43 -1.1
184,125 - MPMX19_02929 0.43 -1.2
184,125 - MPMX19_02929 0.43 -0.3
184,125 - MPMX19_02929 0.43 +0.9
184,125 - MPMX19_02929 0.43 -0.2
184,127 + MPMX19_02929 0.43 -0.3
184,127 + MPMX19_02929 0.43 -1.4
184,127 + MPMX19_02929 0.43 +0.3
184,127 + MPMX19_02929 0.43 -0.5
184,127 + MPMX19_02929 0.43 -0.9
184,127 + MPMX19_02929 0.43 -0.2
184,127 + MPMX19_02929 0.43 -0.1
184,127 + MPMX19_02929 0.43 +0.6
184,128 - MPMX19_02929 0.43 -0.9
184,128 - MPMX19_02929 0.43 +0.9
184,367 + MPMX19_02929 0.69 +0.1
184,367 + MPMX19_02929 0.69 +0.7
184,367 + MPMX19_02929 0.69 +1.3
184,367 + MPMX19_02929 0.69 -0.1
184,368 - MPMX19_02929 0.70 -0.1
184,672 + +0.4
184,846 + MPMX19_02930 0.18 -1.0
184,846 + MPMX19_02930 0.18 -0.8
184,846 + MPMX19_02930 0.18 -1.0
184,847 - MPMX19_02930 0.18 +0.6
184,847 - MPMX19_02930 0.18 +0.1
184,847 - MPMX19_02930 0.18 +0.3
184,847 - MPMX19_02930 0.18 +0.7
185,019 + MPMX19_02930 0.34 +0.9
185,020 - MPMX19_02930 0.34 +1.2
185,020 - MPMX19_02930 0.34 -0.1
185,020 - MPMX19_02930 0.34 -0.1
185,140 + MPMX19_02930 0.45 +1.3
185,263 + MPMX19_02930 0.56 +0.3
185,263 + MPMX19_02930 0.56 -0.3
185,263 + MPMX19_02930 0.56 -0.2
185,263 + MPMX19_02930 0.56 -1.2
185,263 + MPMX19_02930 0.56 +0.2
185,263 + MPMX19_02930 0.56 -0.2
185,263 + MPMX19_02930 0.56 -2.1
185,264 - MPMX19_02930 0.56 +0.3
185,264 - MPMX19_02930 0.56 -1.0
185,264 - MPMX19_02930 0.56 -0.6
185,264 - MPMX19_02930 0.56 +1.4
185,264 - MPMX19_02930 0.56 -0.7
185,362 - MPMX19_02930 0.65 +1.0
185,521 + MPMX19_02930 0.79 -1.3
185,521 + MPMX19_02930 0.79 +0.4
185,521 + MPMX19_02930 0.79 +0.9
185,521 + MPMX19_02930 0.79 +0.2
185,521 + MPMX19_02930 0.79 +0.5
185,521 + MPMX19_02930 0.79 +0.1
185,521 + MPMX19_02930 0.79 -0.3
185,522 - MPMX19_02930 0.79 +0.5
185,522 - MPMX19_02930 0.79 +0.7
185,522 - MPMX19_02930 0.79 -0.6
185,522 - MPMX19_02930 0.79 +0.0
185,522 - MPMX19_02930 0.79 -0.5
185,636 + MPMX19_02930 0.89 -1.0
185,916 + -1.2
185,916 + -0.4
185,916 + -0.2
185,916 + -1.9
185,916 + +0.0
185,916 + +1.8
185,916 + +1.1
185,917 - -1.0
185,917 - -0.7
185,917 - -0.5
185,917 - +0.2
185,917 - -1.4
185,917 - -0.5
185,917 - +0.9
185,917 - +0.9
185,917 - -0.1
185,917 - +0.3
185,917 - +0.6
185,917 - -2.2
185,917 - -0.3
185,917 - -1.9
185,917 - -1.4
186,123 + MPMX19_02931 0.27 -0.4
186,123 + MPMX19_02931 0.27 -0.7
186,124 - MPMX19_02931 0.27 +0.1
186,124 - MPMX19_02931 0.27 +0.5
186,261 + MPMX19_02931 0.44 -0.1
186,262 - MPMX19_02931 0.44 +0.4
186,262 - MPMX19_02931 0.44 -0.0
186,262 - MPMX19_02931 0.44 +0.0
186,394 + MPMX19_02931 0.61 -0.9
186,713 + +0.5
186,713 + -0.3
186,713 + -2.0
186,713 + -0.4
186,713 + -1.0
186,713 + +0.1
186,713 + -1.6
186,714 - -0.7
186,714 - +0.5
186,714 - -1.2
186,714 - -1.5
186,719 + -0.7
186,719 + +1.3
186,720 - +2.0
186,720 - -0.1

Or see this region's nucleotide sequence