Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02905

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02904 and MPMX19_02905 overlap by 8 nucleotidesMPMX19_02905 and MPMX19_02906 overlap by 4 nucleotidesMPMX19_02906 and MPMX19_02907 are separated by 8 nucleotides MPMX19_02904: MPMX19_02904 - hypothetical protein, at 160,910 to 161,977 _02904 MPMX19_02905: MPMX19_02905 - hypothetical protein, at 161,970 to 162,452 _02905 MPMX19_02906: MPMX19_02906 - hypothetical protein, at 162,449 to 163,258 _02906 MPMX19_02907: MPMX19_02907 - Cytochrome c oxidase subunit 2, at 163,267 to 164,226 _02907 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1at 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.265 kb on - strand, within MPMX19_02904at 161.265 kb on - strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.444 kb on + strand, within MPMX19_02904at 161.444 kb on + strand, within MPMX19_02904at 161.444 kb on + strand, within MPMX19_02904at 161.445 kb on - strand, within MPMX19_02904at 161.445 kb on - strand, within MPMX19_02904at 161.445 kb on - strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.855 kb on + strand, within MPMX19_02904at 161.855 kb on + strand, within MPMX19_02904at 161.856 kb on - strand, within MPMX19_02904at 161.856 kb on - strand, within MPMX19_02904at 161.975 kb on + strandat 161.975 kb on + strandat 161.975 kb on + strandat 161.976 kb on - strandat 162.297 kb on + strand, within MPMX19_02905at 162.297 kb on + strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.483 kb on + strandat 162.483 kb on + strandat 162.483 kb on + strandat 162.483 kb on + strandat 162.484 kb on - strandat 162.484 kb on - strandat 162.484 kb on - strandat 162.677 kb on + strand, within MPMX19_02906at 162.677 kb on + strand, within MPMX19_02906at 162.677 kb on + strand, within MPMX19_02906at 162.678 kb on - strand, within MPMX19_02906at 162.678 kb on - strand, within MPMX19_02906at 162.764 kb on + strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 163.022 kb on + strand, within MPMX19_02906at 163.022 kb on + strand, within MPMX19_02906at 163.022 kb on + strand, within MPMX19_02906at 163.023 kb on - strand, within MPMX19_02906at 163.023 kb on - strand, within MPMX19_02906at 163.023 kb on - strand, within MPMX19_02906at 163.128 kb on - strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.155 kb on - strand, within MPMX19_02906at 163.155 kb on - strand, within MPMX19_02906at 163.206 kb on + strandat 163.206 kb on + strandat 163.207 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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161,195 + MPMX19_02904 0.27 +1.0
161,195 + MPMX19_02904 0.27 -2.4
161,195 + MPMX19_02904 0.27 +0.0
161,195 + MPMX19_02904 0.27 -1.2
161,196 - MPMX19_02904 0.27 +0.2
161,196 - MPMX19_02904 0.27 +0.6
161,196 - MPMX19_02904 0.27 +0.1
161,196 - MPMX19_02904 0.27 -0.1
161,196 - MPMX19_02904 0.27 -2.3
161,196 - MPMX19_02904 0.27 -2.1
161,196 - MPMX19_02904 0.27 +0.2
161,264 + MPMX19_02904 0.33 -1.6
161,264 + MPMX19_02904 0.33 -0.4
161,264 + MPMX19_02904 0.33 -0.4
161,264 + MPMX19_02904 0.33 +0.4
161,264 + MPMX19_02904 0.33 +0.0
161,265 - MPMX19_02904 0.33 +0.6
161,265 - MPMX19_02904 0.33 -0.4
161,282 + MPMX19_02904 0.35 -0.9
161,282 + MPMX19_02904 0.35 +0.6
161,282 + MPMX19_02904 0.35 +0.6
161,282 + MPMX19_02904 0.35 -1.4
161,282 + MPMX19_02904 0.35 -1.3
161,283 - MPMX19_02904 0.35 -0.7
161,283 - MPMX19_02904 0.35 +0.0
161,283 - MPMX19_02904 0.35 +0.8
161,283 - MPMX19_02904 0.35 -1.2
161,283 - MPMX19_02904 0.35 +0.5
161,444 + MPMX19_02904 0.50 -1.2
161,444 + MPMX19_02904 0.50 -0.6
161,444 + MPMX19_02904 0.50 +0.4
161,445 - MPMX19_02904 0.50 -0.3
161,445 - MPMX19_02904 0.50 -0.4
161,445 - MPMX19_02904 0.50 +0.0
161,585 + MPMX19_02904 0.63 -0.4
161,585 + MPMX19_02904 0.63 -1.3
161,585 + MPMX19_02904 0.63 +1.4
161,585 + MPMX19_02904 0.63 -0.4
161,585 + MPMX19_02904 0.63 -0.1
161,585 + MPMX19_02904 0.63 -0.2
161,585 + MPMX19_02904 0.63 -1.4
161,585 + MPMX19_02904 0.63 +0.5
161,586 - MPMX19_02904 0.63 -0.4
161,586 - MPMX19_02904 0.63 +1.0
161,586 - MPMX19_02904 0.63 -1.2
161,586 - MPMX19_02904 0.63 -0.4
161,586 - MPMX19_02904 0.63 +1.3
161,648 + MPMX19_02904 0.69 +0.2
161,648 + MPMX19_02904 0.69 -0.6
161,648 + MPMX19_02904 0.69 +0.3
161,648 + MPMX19_02904 0.69 +0.6
161,648 + MPMX19_02904 0.69 +0.3
161,648 + MPMX19_02904 0.69 +0.2
161,648 + MPMX19_02904 0.69 +0.1
161,648 + MPMX19_02904 0.69 -0.9
161,648 + MPMX19_02904 0.69 +0.0
161,648 + MPMX19_02904 0.69 -0.4
161,648 + MPMX19_02904 0.69 -1.2
161,648 + MPMX19_02904 0.69 -1.2
161,648 + MPMX19_02904 0.69 -1.9
161,648 + MPMX19_02904 0.69 -0.2
161,649 - MPMX19_02904 0.69 -0.1
161,649 - MPMX19_02904 0.69 -0.6
161,649 - MPMX19_02904 0.69 +1.6
161,649 - MPMX19_02904 0.69 +0.7
161,649 - MPMX19_02904 0.69 +0.7
161,649 - MPMX19_02904 0.69 +0.1
161,649 - MPMX19_02904 0.69 +0.1
161,855 + MPMX19_02904 0.88 -1.3
161,855 + MPMX19_02904 0.88 -0.1
161,856 - MPMX19_02904 0.89 +0.9
161,856 - MPMX19_02904 0.89 -0.9
161,975 + -0.5
161,975 + -0.4
161,975 + -1.0
161,976 - +0.6
162,297 + MPMX19_02905 0.68 -0.6
162,297 + MPMX19_02905 0.68 +0.2
162,298 - MPMX19_02905 0.68 -1.2
162,298 - MPMX19_02905 0.68 -0.6
162,298 - MPMX19_02905 0.68 -0.0
162,483 + -0.9
162,483 + +0.1
162,483 + +0.2
162,483 + -0.2
162,484 - -0.1
162,484 - -1.1
162,484 - -1.0
162,677 + MPMX19_02906 0.28 -0.3
162,677 + MPMX19_02906 0.28 -1.7
162,677 + MPMX19_02906 0.28 -0.9
162,678 - MPMX19_02906 0.28 +0.7
162,678 - MPMX19_02906 0.28 -1.0
162,764 + MPMX19_02906 0.39 -0.4
162,765 - MPMX19_02906 0.39 -1.1
162,765 - MPMX19_02906 0.39 -1.1
162,765 - MPMX19_02906 0.39 +0.5
162,765 - MPMX19_02906 0.39 -1.2
162,969 - MPMX19_02906 0.64 +0.3
162,969 - MPMX19_02906 0.64 -0.6
162,969 - MPMX19_02906 0.64 -1.3
163,022 + MPMX19_02906 0.71 +0.4
163,022 + MPMX19_02906 0.71 -0.2
163,022 + MPMX19_02906 0.71 -0.1
163,023 - MPMX19_02906 0.71 -0.3
163,023 - MPMX19_02906 0.71 -0.4
163,023 - MPMX19_02906 0.71 -2.9
163,128 - MPMX19_02906 0.84 +0.4
163,154 + MPMX19_02906 0.87 -0.7
163,154 + MPMX19_02906 0.87 +0.8
163,154 + MPMX19_02906 0.87 -1.4
163,154 + MPMX19_02906 0.87 +0.2
163,154 + MPMX19_02906 0.87 +1.1
163,155 - MPMX19_02906 0.87 +0.6
163,155 - MPMX19_02906 0.87 +1.2
163,206 + +0.0
163,206 + -0.9
163,207 - -1.4

Or see this region's nucleotide sequence