Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02875

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02873 and MPMX19_02874 are separated by 17 nucleotidesMPMX19_02874 and MPMX19_02875 are separated by 264 nucleotidesMPMX19_02875 and MPMX19_02876 are separated by 209 nucleotides MPMX19_02873: MPMX19_02873 - Acetyl esterase, at 123,257 to 124,261 _02873 MPMX19_02874: MPMX19_02874 - HTH-type transcriptional regulator SutR, at 124,279 to 124,875 _02874 MPMX19_02875: MPMX19_02875 - hypothetical protein, at 125,140 to 125,502 _02875 MPMX19_02876: MPMX19_02876 - hypothetical protein, at 125,712 to 126,806 _02876 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.289 kb on + strandat 124.289 kb on + strandat 124.289 kb on + strandat 124.289 kb on + strandat 124.289 kb on + strandat 124.290 kb on - strandat 124.290 kb on - strandat 124.290 kb on - strandat 124.290 kb on - strandat 124.290 kb on - strandat 124.290 kb on - strandat 124.290 kb on - strandat 124.290 kb on - strandat 124.304 kb on + strandat 124.304 kb on + strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.305 kb on - strandat 124.495 kb on + strand, within MPMX19_02874at 124.508 kb on + strand, within MPMX19_02874at 124.508 kb on + strand, within MPMX19_02874at 124.508 kb on + strand, within MPMX19_02874at 124.508 kb on + strand, within MPMX19_02874at 124.508 kb on + strand, within MPMX19_02874at 124.509 kb on - strand, within MPMX19_02874at 124.509 kb on - strand, within MPMX19_02874at 124.509 kb on - strand, within MPMX19_02874at 124.509 kb on - strand, within MPMX19_02874at 125.065 kb on + strandat 125.065 kb on + strandat 125.065 kb on + strandat 125.336 kb on + strand, within MPMX19_02875at 125.336 kb on + strand, within MPMX19_02875at 125.336 kb on + strand, within MPMX19_02875at 125.336 kb on + strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.409 kb on - strand, within MPMX19_02875at 125.520 kb on + strandat 125.520 kb on + strandat 125.520 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.648 kb on - strandat 125.648 kb on - strandat 125.648 kb on - strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.683 kb on - strandat 125.683 kb on - strandat 125.683 kb on - strandat 125.683 kb on - strandat 125.754 kb on - strandat 125.926 kb on - strand, within MPMX19_02876at 126.060 kb on + strand, within MPMX19_02876at 126.061 kb on - strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.202 kb on + strand, within MPMX19_02876at 126.202 kb on + strand, within MPMX19_02876at 126.203 kb on - strand, within MPMX19_02876

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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124,289 + -0.9
124,289 + -1.2
124,289 + -0.1
124,289 + +0.9
124,289 + -0.8
124,290 - +0.6
124,290 - -0.4
124,290 - -1.0
124,290 - -0.2
124,290 - +0.4
124,290 - -0.4
124,290 - -0.5
124,290 - -0.4
124,304 + +0.3
124,304 + +0.6
124,305 - -1.2
124,305 - -0.8
124,305 - -0.6
124,305 - -0.6
124,305 - -1.2
124,305 - -1.2
124,305 - +0.5
124,305 - +0.0
124,305 - -1.0
124,305 - -1.0
124,305 - -0.1
124,305 - -0.1
124,305 - -0.5
124,495 + MPMX19_02874 0.36 +0.4
124,508 + MPMX19_02874 0.38 +0.6
124,508 + MPMX19_02874 0.38 +0.4
124,508 + MPMX19_02874 0.38 -0.4
124,508 + MPMX19_02874 0.38 +2.2
124,508 + MPMX19_02874 0.38 -2.1
124,509 - MPMX19_02874 0.39 +0.6
124,509 - MPMX19_02874 0.39 +0.6
124,509 - MPMX19_02874 0.39 +2.1
124,509 - MPMX19_02874 0.39 +0.4
125,065 + +0.9
125,065 + -0.2
125,065 + -0.5
125,336 + MPMX19_02875 0.54 -1.9
125,336 + MPMX19_02875 0.54 +1.2
125,336 + MPMX19_02875 0.54 +0.2
125,336 + MPMX19_02875 0.54 -0.2
125,337 - MPMX19_02875 0.54 +1.3
125,337 - MPMX19_02875 0.54 +2.6
125,337 - MPMX19_02875 0.54 -0.3
125,337 - MPMX19_02875 0.54 +0.8
125,409 - MPMX19_02875 0.74 +0.2
125,520 + -0.7
125,520 + -0.2
125,520 + -0.6
125,647 + +0.0
125,647 + -0.0
125,648 - -0.5
125,648 - +0.8
125,648 - -1.4
125,682 + +0.0
125,682 + +0.3
125,682 + +1.8
125,682 + -2.0
125,682 + -1.4
125,683 - -1.6
125,683 - -0.3
125,683 - -0.6
125,683 - -1.9
125,754 - +0.6
125,926 - MPMX19_02876 0.20 +0.4
126,060 + MPMX19_02876 0.32 +0.5
126,061 - MPMX19_02876 0.32 -1.0
126,175 + MPMX19_02876 0.42 +0.3
126,175 + MPMX19_02876 0.42 +1.0
126,175 + MPMX19_02876 0.42 +1.0
126,175 + MPMX19_02876 0.42 +1.0
126,175 + MPMX19_02876 0.42 -0.4
126,175 + MPMX19_02876 0.42 -1.0
126,176 - MPMX19_02876 0.42 +1.1
126,176 - MPMX19_02876 0.42 -0.4
126,176 - MPMX19_02876 0.42 -2.0
126,176 - MPMX19_02876 0.42 -0.9
126,176 - MPMX19_02876 0.42 -3.0
126,176 - MPMX19_02876 0.42 +0.0
126,202 + MPMX19_02876 0.45 +0.0
126,202 + MPMX19_02876 0.45 +0.1
126,203 - MPMX19_02876 0.45 +1.6

Or see this region's nucleotide sequence