Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02870 and MPMX19_02871 are separated by 87 nucleotides MPMX19_02871 and MPMX19_02872 are separated by 216 nucleotides
MPMX19_02870: MPMX19_02870 - Serine/threonine-protein kinase PknD, at 115,981 to 121,026
_02870
MPMX19_02871: MPMX19_02871 - HTH-type transcriptional activator RhaR, at 121,114 to 122,070
_02871
MPMX19_02872: MPMX19_02872 - Sigma factor SigB regulation protein RsbQ, at 122,287 to 123,093
_02872
Position (kb)
121
122
123 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 120.410 kb on + strand, within MPMX19_02870 at 120.410 kb on + strand, within MPMX19_02870 at 120.410 kb on + strand, within MPMX19_02870 at 120.410 kb on + strand, within MPMX19_02870 at 120.410 kb on + strand, within MPMX19_02870 at 120.411 kb on - strand, within MPMX19_02870 at 120.411 kb on - strand, within MPMX19_02870 at 120.411 kb on - strand, within MPMX19_02870 at 120.431 kb on + strand, within MPMX19_02870 at 120.431 kb on + strand, within MPMX19_02870 at 120.431 kb on + strand, within MPMX19_02870 at 120.431 kb on + strand, within MPMX19_02870 at 120.431 kb on + strand, within MPMX19_02870 at 120.431 kb on + strand, within MPMX19_02870 at 120.431 kb on + strand, within MPMX19_02870 at 120.432 kb on - strand, within MPMX19_02870 at 120.432 kb on - strand, within MPMX19_02870 at 120.432 kb on - strand, within MPMX19_02870 at 120.432 kb on - strand, within MPMX19_02870 at 120.432 kb on - strand, within MPMX19_02870 at 120.491 kb on + strand, within MPMX19_02870 at 120.491 kb on + strand, within MPMX19_02870 at 120.491 kb on + strand, within MPMX19_02870 at 120.491 kb on + strand, within MPMX19_02870 at 120.491 kb on + strand, within MPMX19_02870 at 120.491 kb on + strand, within MPMX19_02870 at 120.492 kb on - strand, within MPMX19_02870 at 120.492 kb on - strand, within MPMX19_02870 at 120.492 kb on - strand, within MPMX19_02870 at 120.492 kb on - strand, within MPMX19_02870 at 120.492 kb on - strand, within MPMX19_02870 at 120.492 kb on - strand, within MPMX19_02870 at 120.492 kb on - strand, within MPMX19_02870 at 121.012 kb on + strand at 121.013 kb on - strand at 121.013 kb on - strand at 121.013 kb on - strand at 121.352 kb on + strand, within MPMX19_02871 at 121.536 kb on - strand, within MPMX19_02871 at 121.536 kb on - strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.584 kb on - strand, within MPMX19_02871 at 121.584 kb on - strand, within MPMX19_02871 at 121.744 kb on + strand, within MPMX19_02871 at 121.744 kb on + strand, within MPMX19_02871 at 121.744 kb on + strand, within MPMX19_02871 at 121.745 kb on - strand, within MPMX19_02871 at 121.745 kb on - strand, within MPMX19_02871 at 121.745 kb on - strand, within MPMX19_02871 at 121.803 kb on - strand, within MPMX19_02871 at 122.033 kb on + strand at 122.033 kb on + strand at 122.033 kb on + strand at 122.033 kb on + strand at 122.034 kb on - strand at 122.141 kb on + strand at 122.141 kb on + strand at 122.142 kb on - strand at 122.142 kb on - strand at 122.168 kb on + strand at 122.168 kb on + strand at 122.169 kb on - strand at 122.195 kb on + strand at 122.210 kb on + strand at 122.211 kb on - strand at 122.211 kb on - strand at 122.223 kb on - strand at 122.249 kb on + strand at 122.260 kb on + strand at 122.279 kb on + strand at 122.280 kb on - strand at 122.280 kb on - strand at 122.280 kb on - strand at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.703 kb on + strand, within MPMX19_02872 at 122.711 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.897 kb on + strand, within MPMX19_02872 at 122.897 kb on + strand, within MPMX19_02872 at 122.897 kb on + strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.952 kb on - strand, within MPMX19_02872
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 120,410 + MPMX19_02870 0.88 -0.3 120,410 + MPMX19_02870 0.88 -1.0 120,410 + MPMX19_02870 0.88 -1.0 120,410 + MPMX19_02870 0.88 +0.1 120,410 + MPMX19_02870 0.88 -0.9 120,411 - MPMX19_02870 0.88 -0.7 120,411 - MPMX19_02870 0.88 -0.8 120,411 - MPMX19_02870 0.88 +0.5 120,431 + MPMX19_02870 0.88 +0.6 120,431 + MPMX19_02870 0.88 +0.7 120,431 + MPMX19_02870 0.88 -0.9 120,431 + MPMX19_02870 0.88 -0.3 120,431 + MPMX19_02870 0.88 +0.2 120,431 + MPMX19_02870 0.88 -0.7 120,431 + MPMX19_02870 0.88 -0.4 120,432 - MPMX19_02870 0.88 +0.4 120,432 - MPMX19_02870 0.88 +0.4 120,432 - MPMX19_02870 0.88 -1.0 120,432 - MPMX19_02870 0.88 +0.0 120,432 - MPMX19_02870 0.88 +0.6 120,491 + MPMX19_02870 0.89 -1.5 120,491 + MPMX19_02870 0.89 -0.9 120,491 + MPMX19_02870 0.89 -0.1 120,491 + MPMX19_02870 0.89 -0.2 120,491 + MPMX19_02870 0.89 +0.5 120,491 + MPMX19_02870 0.89 -0.8 120,492 - MPMX19_02870 0.89 +0.0 120,492 - MPMX19_02870 0.89 +0.1 120,492 - MPMX19_02870 0.89 +0.2 120,492 - MPMX19_02870 0.89 -0.1 120,492 - MPMX19_02870 0.89 -1.7 120,492 - MPMX19_02870 0.89 +0.0 120,492 - MPMX19_02870 0.89 +0.6 121,012 + -0.7 121,013 - +0.0 121,013 - +0.7 121,013 - -0.4 121,352 + MPMX19_02871 0.25 +0.3 121,536 - MPMX19_02871 0.44 +0.1 121,536 - MPMX19_02871 0.44 -0.9 121,583 + MPMX19_02871 0.49 -0.1 121,583 + MPMX19_02871 0.49 +1.0 121,583 + MPMX19_02871 0.49 -0.1 121,583 + MPMX19_02871 0.49 +0.0 121,583 + MPMX19_02871 0.49 +0.3 121,584 - MPMX19_02871 0.49 -0.4 121,584 - MPMX19_02871 0.49 -0.9 121,744 + MPMX19_02871 0.66 -1.0 121,744 + MPMX19_02871 0.66 -1.0 121,744 + MPMX19_02871 0.66 -0.3 121,745 - MPMX19_02871 0.66 -0.9 121,745 - MPMX19_02871 0.66 +0.1 121,745 - MPMX19_02871 0.66 +1.3 121,803 - MPMX19_02871 0.72 -0.9 122,033 + -0.4 122,033 + +0.4 122,033 + -0.9 122,033 + -0.2 122,034 - +0.3 122,141 + -1.9 122,141 + +0.1 122,142 - +1.2 122,142 - +1.6 122,168 + +0.6 122,168 + +0.3 122,169 - -3.7 122,195 + -0.6 122,210 + -0.0 122,211 - +0.1 122,211 - -0.4 122,223 - +0.5 122,249 + +0.2 122,260 + +0.5 122,279 + +0.2 122,280 - -0.2 122,280 - +0.1 122,280 - -0.3 122,633 + MPMX19_02872 0.43 -1.1 122,633 + MPMX19_02872 0.43 -0.7 122,633 + MPMX19_02872 0.43 -0.6 122,633 + MPMX19_02872 0.43 -0.1 122,633 + MPMX19_02872 0.43 +1.5 122,633 + MPMX19_02872 0.43 -0.6 122,633 + MPMX19_02872 0.43 +0.4 122,633 + MPMX19_02872 0.43 -0.8 122,633 + MPMX19_02872 0.43 +0.0 122,633 + MPMX19_02872 0.43 -0.4 122,633 + MPMX19_02872 0.43 +1.9 122,633 + MPMX19_02872 0.43 +0.6 122,633 + MPMX19_02872 0.43 +0.0 122,634 - MPMX19_02872 0.43 +0.5 122,634 - MPMX19_02872 0.43 +0.6 122,634 - MPMX19_02872 0.43 -1.0 122,634 - MPMX19_02872 0.43 -0.6 122,634 - MPMX19_02872 0.43 -2.1 122,634 - MPMX19_02872 0.43 +0.3 122,634 - MPMX19_02872 0.43 -0.6 122,634 - MPMX19_02872 0.43 -1.0 122,634 - MPMX19_02872 0.43 -0.3 122,634 - MPMX19_02872 0.43 -0.4 122,634 - MPMX19_02872 0.43 +0.6 122,634 - MPMX19_02872 0.43 +1.2 122,703 + MPMX19_02872 0.52 -1.0 122,711 + MPMX19_02872 0.53 -1.6 122,864 + MPMX19_02872 0.71 +0.6 122,864 + MPMX19_02872 0.71 -0.4 122,864 + MPMX19_02872 0.71 +0.5 122,864 + MPMX19_02872 0.71 +1.6 122,864 + MPMX19_02872 0.71 -0.7 122,864 + MPMX19_02872 0.71 +0.0 122,864 + MPMX19_02872 0.71 -1.2 122,865 - MPMX19_02872 0.72 +1.3 122,865 - MPMX19_02872 0.72 +1.1 122,865 - MPMX19_02872 0.72 +1.4 122,865 - MPMX19_02872 0.72 +0.4 122,865 - MPMX19_02872 0.72 -0.4 122,865 - MPMX19_02872 0.72 -0.5 122,865 - MPMX19_02872 0.72 -0.6 122,882 + MPMX19_02872 0.74 +0.5 122,882 + MPMX19_02872 0.74 -0.7 122,882 + MPMX19_02872 0.74 -0.1 122,882 + MPMX19_02872 0.74 -1.5 122,882 + MPMX19_02872 0.74 -0.8 122,883 - MPMX19_02872 0.74 +0.0 122,883 - MPMX19_02872 0.74 -1.1 122,883 - MPMX19_02872 0.74 -0.6 122,883 - MPMX19_02872 0.74 -0.2 122,883 - MPMX19_02872 0.74 -0.1 122,883 - MPMX19_02872 0.74 -0.2 122,897 + MPMX19_02872 0.76 +0.0 122,897 + MPMX19_02872 0.76 +0.1 122,897 + MPMX19_02872 0.76 +0.1 122,898 - MPMX19_02872 0.76 -1.1 122,898 - MPMX19_02872 0.76 +1.6 122,898 - MPMX19_02872 0.76 -0.9 122,898 - MPMX19_02872 0.76 +0.5 122,898 - MPMX19_02872 0.76 -0.8 122,898 - MPMX19_02872 0.76 -0.9 122,898 - MPMX19_02872 0.76 -0.9 122,898 - MPMX19_02872 0.76 -0.2 122,952 - MPMX19_02872 0.82 +0.1
Or see this region's nucleotide sequence