Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02829

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02828 and MPMX19_02829 are separated by 0 nucleotidesMPMX19_02829 and MPMX19_02830 are separated by 52 nucleotides MPMX19_02828: MPMX19_02828 - Glutathione import ATP-binding protein GsiA, at 69,143 to 70,789 _02828 MPMX19_02829: MPMX19_02829 - 2-dehydropantoate 2-reductase, at 70,790 to 71,770 _02829 MPMX19_02830: MPMX19_02830 - N-carbamoyl-L-amino-acid hydrolase, at 71,823 to 73,064 _02830 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1at 69.854 kb on + strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.899 kb on - strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 70.262 kb on + strand, within MPMX19_02828at 70.262 kb on + strand, within MPMX19_02828at 70.263 kb on - strand, within MPMX19_02828at 70.703 kb on + strandat 70.703 kb on + strandat 70.703 kb on + strandat 70.703 kb on + strandat 70.704 kb on - strandat 70.704 kb on - strandat 71.085 kb on + strand, within MPMX19_02829at 71.086 kb on - strand, within MPMX19_02829at 71.095 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.739 kb on + strandat 71.740 kb on - strandat 72.346 kb on - strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.385 kb on - strand, within MPMX19_02830at 72.385 kb on - strand, within MPMX19_02830at 72.474 kb on + strand, within MPMX19_02830at 72.475 kb on - strand, within MPMX19_02830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
69,854 + MPMX19_02828 0.43 -0.2
69,854 + MPMX19_02828 0.43 -0.3
69,854 + MPMX19_02828 0.43 -0.6
69,896 + MPMX19_02828 0.46 -0.7
69,896 + MPMX19_02828 0.46 -0.8
69,896 + MPMX19_02828 0.46 -0.3
69,897 - MPMX19_02828 0.46 -0.1
69,897 - MPMX19_02828 0.46 -0.6
69,897 - MPMX19_02828 0.46 -2.0
69,897 - MPMX19_02828 0.46 -0.1
69,897 - MPMX19_02828 0.46 -0.9
69,899 - MPMX19_02828 0.46 -0.4
69,929 + MPMX19_02828 0.48 -0.6
69,929 + MPMX19_02828 0.48 -0.1
69,929 + MPMX19_02828 0.48 -0.5
69,930 - MPMX19_02828 0.48 +0.5
69,930 - MPMX19_02828 0.48 +0.1
69,930 - MPMX19_02828 0.48 -0.7
69,930 - MPMX19_02828 0.48 +1.2
70,262 + MPMX19_02828 0.68 +0.5
70,262 + MPMX19_02828 0.68 +0.1
70,263 - MPMX19_02828 0.68 +1.4
70,703 + +0.2
70,703 + +0.4
70,703 + -0.2
70,703 + -0.6
70,704 - -0.4
70,704 - -1.7
71,085 + MPMX19_02829 0.30 -1.1
71,086 - MPMX19_02829 0.30 -0.5
71,095 + MPMX19_02829 0.31 -1.0
71,314 + MPMX19_02829 0.53 -0.3
71,314 + MPMX19_02829 0.53 -1.4
71,314 + MPMX19_02829 0.53 -0.7
71,314 + MPMX19_02829 0.53 +0.4
71,624 + MPMX19_02829 0.85 +0.4
71,624 + MPMX19_02829 0.85 -1.1
71,624 + MPMX19_02829 0.85 -0.8
71,624 + MPMX19_02829 0.85 -0.2
71,624 + MPMX19_02829 0.85 -1.2
71,624 + MPMX19_02829 0.85 -0.7
71,624 + MPMX19_02829 0.85 +0.7
71,625 - MPMX19_02829 0.85 +0.0
71,625 - MPMX19_02829 0.85 -0.7
71,625 - MPMX19_02829 0.85 -1.6
71,625 - MPMX19_02829 0.85 +0.6
71,625 - MPMX19_02829 0.85 -0.3
71,625 - MPMX19_02829 0.85 +0.4
71,625 - MPMX19_02829 0.85 -0.1
71,625 - MPMX19_02829 0.85 -0.8
71,739 + +0.9
71,740 - +0.3
72,346 - MPMX19_02830 0.42 +0.3
72,384 + MPMX19_02830 0.45 +0.2
72,384 + MPMX19_02830 0.45 -0.6
72,384 + MPMX19_02830 0.45 -2.2
72,385 - MPMX19_02830 0.45 -0.2
72,385 - MPMX19_02830 0.45 -0.1
72,474 + MPMX19_02830 0.52 -1.6
72,475 - MPMX19_02830 0.52 -1.7

Or see this region's nucleotide sequence