Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02827

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02826 and MPMX19_02827 overlap by 4 nucleotidesMPMX19_02827 and MPMX19_02828 are separated by 49 nucleotides MPMX19_02826: MPMX19_02826 - Dipeptide transport system permease protein DppB, at 67,274 to 68,254 _02826 MPMX19_02827: MPMX19_02827 - Dipeptide transport system permease protein DppC, at 68,251 to 69,093 _02827 MPMX19_02828: MPMX19_02828 - Glutathione import ATP-binding protein GsiA, at 69,143 to 70,789 _02828 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 67.261 kb on + strandat 67.261 kb on + strandat 67.262 kb on - strandat 67.262 kb on - strandat 67.262 kb on - strandat 67.262 kb on - strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.345 kb on - strandat 67.345 kb on - strandat 67.345 kb on - strandat 67.472 kb on + strand, within MPMX19_02826at 67.473 kb on - strand, within MPMX19_02826at 67.473 kb on - strand, within MPMX19_02826at 67.473 kb on - strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.490 kb on + strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.491 kb on - strand, within MPMX19_02826at 67.529 kb on + strand, within MPMX19_02826at 67.706 kb on + strand, within MPMX19_02826at 67.706 kb on + strand, within MPMX19_02826at 67.706 kb on + strand, within MPMX19_02826at 67.707 kb on - strand, within MPMX19_02826at 67.721 kb on + strand, within MPMX19_02826at 67.722 kb on - strand, within MPMX19_02826at 67.787 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.880 kb on + strand, within MPMX19_02826at 67.881 kb on - strand, within MPMX19_02826at 67.881 kb on - strand, within MPMX19_02826at 67.881 kb on - strand, within MPMX19_02826at 67.892 kb on + strand, within MPMX19_02826at 67.893 kb on - strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.141 kb on + strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.142 kb on - strand, within MPMX19_02826at 68.217 kb on - strandat 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 69.600 kb on - strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.899 kb on - strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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67,261 + +0.9
67,261 + +0.1
67,262 - +0.3
67,262 - +0.3
67,262 - +1.6
67,262 - -1.2
67,344 + +1.2
67,344 + +0.6
67,344 + -1.6
67,344 + +0.0
67,344 + +1.1
67,345 - -0.4
67,345 - +0.6
67,345 - +0.6
67,472 + MPMX19_02826 0.20 +0.3
67,473 - MPMX19_02826 0.20 +0.3
67,473 - MPMX19_02826 0.20 +0.0
67,473 - MPMX19_02826 0.20 -0.8
67,490 + MPMX19_02826 0.22 +0.3
67,490 + MPMX19_02826 0.22 -1.3
67,490 + MPMX19_02826 0.22 +0.1
67,490 + MPMX19_02826 0.22 -2.6
67,491 - MPMX19_02826 0.22 +0.3
67,491 - MPMX19_02826 0.22 -0.1
67,491 - MPMX19_02826 0.22 +0.9
67,491 - MPMX19_02826 0.22 -0.1
67,491 - MPMX19_02826 0.22 -0.1
67,491 - MPMX19_02826 0.22 -0.6
67,491 - MPMX19_02826 0.22 -0.1
67,491 - MPMX19_02826 0.22 -0.9
67,529 + MPMX19_02826 0.26 +0.8
67,706 + MPMX19_02826 0.44 +0.3
67,706 + MPMX19_02826 0.44 -1.2
67,706 + MPMX19_02826 0.44 +0.2
67,707 - MPMX19_02826 0.44 -1.3
67,721 + MPMX19_02826 0.46 +1.1
67,722 - MPMX19_02826 0.46 -0.9
67,787 + MPMX19_02826 0.52 +0.9
67,880 + MPMX19_02826 0.62 +1.1
67,880 + MPMX19_02826 0.62 -0.5
67,880 + MPMX19_02826 0.62 -2.4
67,880 + MPMX19_02826 0.62 +0.6
67,880 + MPMX19_02826 0.62 -2.3
67,880 + MPMX19_02826 0.62 -0.4
67,880 + MPMX19_02826 0.62 -0.2
67,880 + MPMX19_02826 0.62 -0.7
67,880 + MPMX19_02826 0.62 +0.9
67,880 + MPMX19_02826 0.62 -0.3
67,880 + MPMX19_02826 0.62 +0.7
67,881 - MPMX19_02826 0.62 +0.9
67,881 - MPMX19_02826 0.62 +0.6
67,881 - MPMX19_02826 0.62 +0.0
67,892 + MPMX19_02826 0.63 +0.4
67,893 - MPMX19_02826 0.63 -0.8
68,141 + MPMX19_02826 0.88 +0.1
68,141 + MPMX19_02826 0.88 +1.0
68,141 + MPMX19_02826 0.88 +0.3
68,141 + MPMX19_02826 0.88 -1.7
68,141 + MPMX19_02826 0.88 +1.1
68,142 - MPMX19_02826 0.88 -1.1
68,142 - MPMX19_02826 0.88 -2.5
68,142 - MPMX19_02826 0.88 -0.9
68,142 - MPMX19_02826 0.88 -1.2
68,217 - -0.5
68,938 + MPMX19_02827 0.81 +0.0
68,938 + MPMX19_02827 0.81 -1.0
68,938 + MPMX19_02827 0.81 -1.9
68,938 + MPMX19_02827 0.81 +1.5
68,938 + MPMX19_02827 0.81 +0.8
68,938 + MPMX19_02827 0.81 -0.2
68,938 + MPMX19_02827 0.81 +0.3
68,938 + MPMX19_02827 0.81 -0.6
68,939 - MPMX19_02827 0.82 -2.1
68,939 - MPMX19_02827 0.82 +0.7
68,939 - MPMX19_02827 0.82 -1.1
68,939 - MPMX19_02827 0.82 -0.9
68,939 - MPMX19_02827 0.82 +0.6
68,939 - MPMX19_02827 0.82 +0.8
68,939 - MPMX19_02827 0.82 +0.3
68,939 - MPMX19_02827 0.82 +0.2
68,939 - MPMX19_02827 0.82 -0.9
68,939 - MPMX19_02827 0.82 +1.7
69,600 - MPMX19_02828 0.28 +1.0
69,854 + MPMX19_02828 0.43 -0.2
69,854 + MPMX19_02828 0.43 -0.3
69,854 + MPMX19_02828 0.43 -0.6
69,896 + MPMX19_02828 0.46 -0.7
69,896 + MPMX19_02828 0.46 -0.8
69,896 + MPMX19_02828 0.46 -0.3
69,897 - MPMX19_02828 0.46 -0.1
69,897 - MPMX19_02828 0.46 -0.6
69,897 - MPMX19_02828 0.46 -2.0
69,897 - MPMX19_02828 0.46 -0.1
69,897 - MPMX19_02828 0.46 -0.9
69,899 - MPMX19_02828 0.46 -0.4
69,929 + MPMX19_02828 0.48 -0.6
69,929 + MPMX19_02828 0.48 -0.1
69,929 + MPMX19_02828 0.48 -0.5
69,930 - MPMX19_02828 0.48 +0.5
69,930 - MPMX19_02828 0.48 +0.1
69,930 - MPMX19_02828 0.48 -0.7
69,930 - MPMX19_02828 0.48 +1.2

Or see this region's nucleotide sequence