Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02801

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02800 and MPMX19_02801 overlap by 4 nucleotidesMPMX19_02801 and MPMX19_02802 overlap by 8 nucleotidesMPMX19_02802 and MPMX19_02803 are separated by 5 nucleotides MPMX19_02800: MPMX19_02800 - hypothetical protein, at 34,837 to 35,853 _02800 MPMX19_02801: MPMX19_02801 - Lipopolysaccharide export system ATP-binding protein LptB, at 35,850 to 36,641 _02801 MPMX19_02802: MPMX19_02802 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 36,634 to 37,341 _02802 MPMX19_02803: MPMX19_02803 - putative FAD-linked oxidoreductase, at 37,347 to 38,789 _02803 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 34.936 kb on + strandat 34.969 kb on + strand, within MPMX19_02800at 34.969 kb on + strand, within MPMX19_02800at 34.969 kb on + strand, within MPMX19_02800at 34.969 kb on + strand, within MPMX19_02800at 34.969 kb on + strand, within MPMX19_02800at 34.969 kb on + strand, within MPMX19_02800at 34.970 kb on - strand, within MPMX19_02800at 34.970 kb on - strand, within MPMX19_02800at 34.970 kb on - strand, within MPMX19_02800at 34.970 kb on - strand, within MPMX19_02800at 34.970 kb on - strand, within MPMX19_02800at 34.970 kb on - strand, within MPMX19_02800at 34.970 kb on - strand, within MPMX19_02800at 35.008 kb on + strand, within MPMX19_02800at 35.059 kb on + strand, within MPMX19_02800at 35.059 kb on + strand, within MPMX19_02800at 35.059 kb on + strand, within MPMX19_02800at 35.059 kb on + strand, within MPMX19_02800at 35.060 kb on - strand, within MPMX19_02800at 35.060 kb on - strand, within MPMX19_02800at 35.060 kb on - strand, within MPMX19_02800at 35.060 kb on - strand, within MPMX19_02800at 35.060 kb on - strand, within MPMX19_02800at 35.060 kb on - strand, within MPMX19_02800at 35.159 kb on - strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.332 kb on + strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.333 kb on - strand, within MPMX19_02800at 35.335 kb on + strand, within MPMX19_02800at 35.335 kb on + strand, within MPMX19_02800at 35.335 kb on + strand, within MPMX19_02800at 35.335 kb on + strand, within MPMX19_02800at 35.335 kb on + strand, within MPMX19_02800at 35.335 kb on + strand, within MPMX19_02800at 35.335 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.336 kb on - strand, within MPMX19_02800at 35.368 kb on + strand, within MPMX19_02800at 35.368 kb on + strand, within MPMX19_02800at 35.368 kb on + strand, within MPMX19_02800at 35.369 kb on - strand, within MPMX19_02800at 35.369 kb on - strand, within MPMX19_02800at 35.369 kb on - strand, within MPMX19_02800at 35.369 kb on - strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.527 kb on + strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.528 kb on - strand, within MPMX19_02800at 35.536 kb on + strand, within MPMX19_02800at 35.536 kb on + strand, within MPMX19_02800at 35.536 kb on + strand, within MPMX19_02800at 35.536 kb on + strand, within MPMX19_02800at 35.536 kb on + strand, within MPMX19_02800at 35.536 kb on + strand, within MPMX19_02800at 35.537 kb on - strand, within MPMX19_02800at 35.537 kb on - strand, within MPMX19_02800at 35.537 kb on - strand, within MPMX19_02800at 35.537 kb on - strand, within MPMX19_02800at 35.537 kb on - strand, within MPMX19_02800at 35.537 kb on - strand, within MPMX19_02800at 35.537 kb on - strand, within MPMX19_02800at 35.604 kb on + strand, within MPMX19_02800at 35.653 kb on + strand, within MPMX19_02800at 35.653 kb on + strand, within MPMX19_02800at 35.654 kb on - strand, within MPMX19_02800at 35.654 kb on - strand, within MPMX19_02800at 35.654 kb on - strand, within MPMX19_02800at 35.654 kb on - strand, within MPMX19_02800at 35.654 kb on - strand, within MPMX19_02800at 35.654 kb on - strand, within MPMX19_02800at 35.654 kb on - strand, within MPMX19_02800at 35.655 kb on + strand, within MPMX19_02800at 35.656 kb on - strand, within MPMX19_02800at 36.331 kb on - strand, within MPMX19_02801at 36.331 kb on - strand, within MPMX19_02801at 36.331 kb on - strand, within MPMX19_02801at 36.331 kb on - strand, within MPMX19_02801at 36.331 kb on - strand, within MPMX19_02801at 36.612 kb on + strandat 36.612 kb on + strandat 36.612 kb on + strandat 36.612 kb on + strandat 36.612 kb on + strandat 36.613 kb on - strandat 36.613 kb on - strandat 36.613 kb on - strandat 36.639 kb on + strandat 36.639 kb on + strandat 36.639 kb on + strandat 36.639 kb on + strandat 36.640 kb on - strandat 36.640 kb on - strandat 36.831 kb on + strand, within MPMX19_02802at 36.832 kb on - strand, within MPMX19_02802at 36.989 kb on - strand, within MPMX19_02802at 36.989 kb on - strand, within MPMX19_02802at 36.989 kb on - strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.328 kb on - strandat 37.328 kb on - strandat 37.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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34,936 + +0.5
34,969 + MPMX19_02800 0.13 +1.0
34,969 + MPMX19_02800 0.13 +0.0
34,969 + MPMX19_02800 0.13 -1.5
34,969 + MPMX19_02800 0.13 -2.9
34,969 + MPMX19_02800 0.13 +0.6
34,969 + MPMX19_02800 0.13 -0.4
34,970 - MPMX19_02800 0.13 +0.1
34,970 - MPMX19_02800 0.13 -0.9
34,970 - MPMX19_02800 0.13 +0.6
34,970 - MPMX19_02800 0.13 +0.2
34,970 - MPMX19_02800 0.13 +0.6
34,970 - MPMX19_02800 0.13 +0.3
34,970 - MPMX19_02800 0.13 -1.1
35,008 + MPMX19_02800 0.17 +0.0
35,059 + MPMX19_02800 0.22 -0.9
35,059 + MPMX19_02800 0.22 -1.2
35,059 + MPMX19_02800 0.22 +0.1
35,059 + MPMX19_02800 0.22 -1.4
35,060 - MPMX19_02800 0.22 +0.7
35,060 - MPMX19_02800 0.22 -1.3
35,060 - MPMX19_02800 0.22 +0.6
35,060 - MPMX19_02800 0.22 +0.1
35,060 - MPMX19_02800 0.22 -0.5
35,060 - MPMX19_02800 0.22 -0.2
35,159 - MPMX19_02800 0.32 +0.4
35,332 + MPMX19_02800 0.49 -1.0
35,332 + MPMX19_02800 0.49 -1.9
35,332 + MPMX19_02800 0.49 -1.4
35,332 + MPMX19_02800 0.49 +0.6
35,332 + MPMX19_02800 0.49 -1.2
35,332 + MPMX19_02800 0.49 -0.5
35,332 + MPMX19_02800 0.49 -0.1
35,332 + MPMX19_02800 0.49 +1.3
35,332 + MPMX19_02800 0.49 +0.0
35,332 + MPMX19_02800 0.49 -0.3
35,333 - MPMX19_02800 0.49 -1.9
35,333 - MPMX19_02800 0.49 -0.5
35,333 - MPMX19_02800 0.49 +0.6
35,333 - MPMX19_02800 0.49 -0.4
35,333 - MPMX19_02800 0.49 -0.3
35,333 - MPMX19_02800 0.49 -1.1
35,333 - MPMX19_02800 0.49 +0.4
35,333 - MPMX19_02800 0.49 +0.0
35,333 - MPMX19_02800 0.49 -1.7
35,333 - MPMX19_02800 0.49 +1.3
35,333 - MPMX19_02800 0.49 -1.2
35,335 + MPMX19_02800 0.49 -1.2
35,335 + MPMX19_02800 0.49 -1.0
35,335 + MPMX19_02800 0.49 +0.5
35,335 + MPMX19_02800 0.49 +0.5
35,335 + MPMX19_02800 0.49 -1.0
35,335 + MPMX19_02800 0.49 -1.2
35,335 - MPMX19_02800 0.49 -2.5
35,336 - MPMX19_02800 0.49 -1.7
35,336 - MPMX19_02800 0.49 -2.9
35,336 - MPMX19_02800 0.49 -1.0
35,336 - MPMX19_02800 0.49 -0.1
35,336 - MPMX19_02800 0.49 -0.7
35,336 - MPMX19_02800 0.49 -1.6
35,336 - MPMX19_02800 0.49 -2.4
35,336 - MPMX19_02800 0.49 -0.2
35,336 - MPMX19_02800 0.49 -1.3
35,336 - MPMX19_02800 0.49 -2.3
35,336 - MPMX19_02800 0.49 -1.0
35,368 + MPMX19_02800 0.52 +0.0
35,368 + MPMX19_02800 0.52 +1.3
35,368 + MPMX19_02800 0.52 +1.2
35,369 - MPMX19_02800 0.52 +0.9
35,369 - MPMX19_02800 0.52 -1.0
35,369 - MPMX19_02800 0.52 +1.2
35,369 - MPMX19_02800 0.52 +0.5
35,527 + MPMX19_02800 0.68 -0.7
35,527 + MPMX19_02800 0.68 +0.4
35,527 + MPMX19_02800 0.68 +0.6
35,527 + MPMX19_02800 0.68 -0.7
35,527 + MPMX19_02800 0.68 -0.2
35,527 + MPMX19_02800 0.68 +0.6
35,527 + MPMX19_02800 0.68 +0.1
35,527 + MPMX19_02800 0.68 +0.4
35,527 + MPMX19_02800 0.68 +0.4
35,527 + MPMX19_02800 0.68 +0.0
35,527 + MPMX19_02800 0.68 -0.0
35,527 + MPMX19_02800 0.68 +0.0
35,527 + MPMX19_02800 0.68 -2.0
35,527 + MPMX19_02800 0.68 +0.1
35,527 + MPMX19_02800 0.68 +0.9
35,527 + MPMX19_02800 0.68 -0.1
35,527 + MPMX19_02800 0.68 +0.3
35,527 + MPMX19_02800 0.68 -1.1
35,527 + MPMX19_02800 0.68 +0.0
35,527 + MPMX19_02800 0.68 -1.6
35,527 + MPMX19_02800 0.68 -0.7
35,528 - MPMX19_02800 0.68 +0.0
35,528 - MPMX19_02800 0.68 -0.4
35,528 - MPMX19_02800 0.68 +0.9
35,528 - MPMX19_02800 0.68 -1.6
35,528 - MPMX19_02800 0.68 +0.4
35,528 - MPMX19_02800 0.68 -0.5
35,528 - MPMX19_02800 0.68 -1.6
35,528 - MPMX19_02800 0.68 +0.7
35,528 - MPMX19_02800 0.68 -0.6
35,528 - MPMX19_02800 0.68 -0.7
35,528 - MPMX19_02800 0.68 +0.5
35,528 - MPMX19_02800 0.68 +0.6
35,528 - MPMX19_02800 0.68 -1.3
35,528 - MPMX19_02800 0.68 -1.0
35,528 - MPMX19_02800 0.68 +0.3
35,528 - MPMX19_02800 0.68 -1.6
35,528 - MPMX19_02800 0.68 -0.1
35,528 - MPMX19_02800 0.68 +0.3
35,536 + MPMX19_02800 0.69 -0.1
35,536 + MPMX19_02800 0.69 -0.4
35,536 + MPMX19_02800 0.69 -1.2
35,536 + MPMX19_02800 0.69 -0.6
35,536 + MPMX19_02800 0.69 +0.6
35,536 + MPMX19_02800 0.69 -0.2
35,537 - MPMX19_02800 0.69 -0.1
35,537 - MPMX19_02800 0.69 +1.1
35,537 - MPMX19_02800 0.69 -0.6
35,537 - MPMX19_02800 0.69 -1.9
35,537 - MPMX19_02800 0.69 -0.7
35,537 - MPMX19_02800 0.69 +0.9
35,537 - MPMX19_02800 0.69 +0.6
35,604 + MPMX19_02800 0.75 -1.2
35,653 + MPMX19_02800 0.80 +0.8
35,653 + MPMX19_02800 0.80 +0.3
35,654 - MPMX19_02800 0.80 -1.2
35,654 - MPMX19_02800 0.80 -0.1
35,654 - MPMX19_02800 0.80 -0.1
35,654 - MPMX19_02800 0.80 -0.1
35,654 - MPMX19_02800 0.80 -0.6
35,654 - MPMX19_02800 0.80 -0.4
35,654 - MPMX19_02800 0.80 +0.7
35,655 + MPMX19_02800 0.80 +0.6
35,656 - MPMX19_02800 0.81 -2.4
36,331 - MPMX19_02801 0.61 -0.1
36,331 - MPMX19_02801 0.61 +1.8
36,331 - MPMX19_02801 0.61 -0.1
36,331 - MPMX19_02801 0.61 +0.0
36,331 - MPMX19_02801 0.61 +0.6
36,612 + -1.5
36,612 + +0.9
36,612 + -0.7
36,612 + -0.7
36,612 + +0.4
36,613 - -0.7
36,613 - +0.0
36,613 - -0.3
36,639 + +0.0
36,639 + +1.0
36,639 + -0.0
36,639 + -1.4
36,640 - -0.2
36,640 - +0.4
36,831 + MPMX19_02802 0.28 -0.4
36,832 - MPMX19_02802 0.28 +0.4
36,989 - MPMX19_02802 0.50 -1.2
36,989 - MPMX19_02802 0.50 +0.3
36,989 - MPMX19_02802 0.50 +0.0
37,249 + MPMX19_02802 0.87 +0.1
37,249 + MPMX19_02802 0.87 -0.3
37,249 + MPMX19_02802 0.87 +0.4
37,249 + MPMX19_02802 0.87 +1.0
37,249 + MPMX19_02802 0.87 -0.6
37,249 + MPMX19_02802 0.87 -0.1
37,249 + MPMX19_02802 0.87 -1.1
37,249 + MPMX19_02802 0.87 -1.0
37,249 + MPMX19_02802 0.87 +1.3
37,250 - MPMX19_02802 0.87 -1.0
37,250 - MPMX19_02802 0.87 -2.5
37,250 - MPMX19_02802 0.87 -0.4
37,250 - MPMX19_02802 0.87 +0.1
37,250 - MPMX19_02802 0.87 -0.6
37,250 - MPMX19_02802 0.87 -0.8
37,250 - MPMX19_02802 0.87 -0.5
37,250 - MPMX19_02802 0.87 -0.4
37,250 - MPMX19_02802 0.87 -0.3
37,250 - MPMX19_02802 0.87 -1.6
37,250 - MPMX19_02802 0.87 +0.8
37,327 + -0.5
37,327 + -1.4
37,327 + -1.0
37,327 + -0.3
37,327 + +0.8
37,327 + -1.4
37,328 - +0.2
37,328 - -0.1
37,328 - -1.2

Or see this region's nucleotide sequence